Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ADFP Gene 0 71.07 18.18 51.28 24.22 43.26 20.07 33.77 36.46 27.47 42.84 36.44 95.09 49.69 78.74 131.66 52.02 73.89 17.10 12.89 14.59 192.84 328.82 222.00 2 494753 Transcript 0 0.07 1.86 1.35 2.22 0.37 0.00 0.83 1.85 1.04 0.58 0.03 0.69 0.12 0.05 0.19 2.55 0.00 0.67 3.28 0.07 0.30 0.18 0.98 3 434144 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 276914 Transcript 0 176.74 38.90 104.09 64.55 95.47 43.14 90.51 81.73 68.60 116.14 91.53 256.67 116.51 217.90 286.55 153.29 186.93 51.65 27.42 54.89 509.14 821.54 522.70 5 411567 Transcript 0 15.52 1.69 2.34 0.28 4.79 1.45 2.76 0.58 0.00 1.10 0.48 1.80 5.08 6.83 12.33 1.98 2.34 0.00 0.00 0.00 5.42 15.22 7.10 6 472715 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 380464 Transcript 0 1.62 1.62 25.14 1.68 2.44 0.00 5.36 11.83 10.96 3.51 1.13 0.58 1.37 1.19 4.86 0.00 4.49 0.00 0.00 0.67 6.26 45.79 32.57 8 380465 Transcript 0 3.16 0.42 4.05 0.00 0.00 0.00 2.16 2.58 0.54 0.96 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.16 2.93 11.91 9.62 9 475923 Transcript 0 3.67 3.07 7.38 1.99 4.61 0.43 1.40 5.35 4.89 1.73 3.06 10.89 2.71 3.89 5.89 3.88 4.44 0.15 1.77 0.24 8.36 47.01 41.45 10 464326 Transcript 0 16.27 2.31 9.77 9.31 11.78 1.02 7.27 3.50 2.53 4.81 4.34 9.78 12.93 8.57 27.70 4.54 3.45 0.13 4.92 0.73 11.32 14.62 3.80 11 ER1a ExonRegion 0 0.00 0.00 0.00 0.10 0.00 0.00 0.00 1.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.57 0.00 0.00 0.00 0.00 0.00 0.00 1.36 12 ER1b ExonRegion 0 0.00 1.85 0.55 1.89 0.00 0.00 1.21 0.65 0.00 0.52 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 2.90 0.00 0.00 0.00 0.79 13 E1_Da NovelBoundary 0 0.00 0.00 0.00 1.47 0.00 0.00 3.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.55 14.40 0.00 3.15 0.00 3.67 14 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER2a ExonRegion 0 0.07 0.04 3.38 3.80 0.09 0.00 0.70 1.70 1.41 0.68 0.00 0.08 0.08 0.00 0.00 0.00 0.00 0.00 3.74 0.04 0.04 0.15 0.46 16 E2_Da KnownBoundary 0 0.00 0.00 8.22 7.42 0.00 0.00 2.25 2.09 1.74 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.73 13.37 0.00 0.00 0.00 0.00 17 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER2b ExonRegion 0 0.15 3.71 2.71 4.33 0.74 0.00 1.66 1.98 2.07 1.15 0.07 1.38 0.25 0.09 0.39 0.52 0.00 1.33 6.56 0.15 0.61 0.36 0.60 19 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER3b ExonRegion 0 4.98 0.36 0.20 0.77 1.54 1.94 2.52 0.00 1.54 0.19 7.73 2.14 0.00 4.38 9.52 6.64 6.72 0.85 1.24 1.55 8.30 6.81 7.81 21 E3_Ac KnownBoundary 0 10.82 0.00 0.00 2.00 4.16 2.73 5.79 1.97 4.69 0.00 8.48 0.00 0.00 14.83 13.35 11.19 4.49 9.87 4.52 9.08 20.51 6.18 27.57 22 E3_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 23 E3_Ae KnownBoundary 0 17.34 0.00 3.93 1.60 3.31 2.21 9.14 0.00 1.19 3.87 2.05 0.00 0.00 2.30 13.23 7.60 26.65 0.00 0.00 0.00 22.36 15.86 47.29 24 ER3c ExonRegion 0 27.06 2.91 2.80 1.56 10.89 9.69 13.24 0.37 3.97 2.95 16.15 0.00 0.00 22.27 52.84 22.72 30.65 1.58 3.41 6.38 47.06 46.28 80.34 25 ER3d ExonRegion 0 88.89 14.24 15.93 4.09 34.78 40.34 23.83 5.19 14.82 16.06 17.40 0.00 0.00 58.47 133.46 77.28 72.62 0.00 6.37 6.38 180.70 241.69 405.26 26 ER3e ExonRegion 1 142.75 20.23 33.06 10.12 49.79 75.61 59.91 15.74 29.84 30.27 30.17 2.01 1.93 103.39 207.28 125.78 147.95 10.49 12.34 8.36 331.34 492.64 696.09 27 E3a_E4a KnownJunction 0 44.23 11.71 46.72 15.35 29.88 12.38 53.22 27.19 39.09 43.17 11.53 54.32 25.65 21.90 60.45 28.54 43.01 17.41 11.77 3.26 102.06 135.45 210.59 28 ER4a ExonRegion 0 35.41 2.97 39.21 22.75 48.11 11.36 51.58 32.11 30.90 37.87 36.32 117.73 47.08 29.77 72.81 22.23 47.55 23.52 7.78 12.56 142.44 161.35 170.89 29 E4_Da KnownBoundary 0 0.00 0.00 8.46 1.86 0.00 0.00 1.90 5.09 5.90 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.46 41.09 46.10 30 E4a_E4b KnownJunction 0 31.49 8.81 52.87 54.27 27.59 26.69 42.40 50.19 28.39 55.82 46.12 41.71 12.82 44.62 64.53 57.76 58.81 57.74 13.46 33.75 152.96 131.22 70.17 31 ER4b ExonRegion 0 3.27 1.18 7.42 1.35 3.34 0.13 1.20 3.57 5.63 1.21 2.83 3.64 0.43 1.09 3.40 0.17 4.76 0.29 1.48 0.12 7.99 30.68 39.68 32 E4_Ab KnownBoundary 0 3.63 0.00 8.46 1.50 0.00 0.00 2.25 8.30 4.92 1.16 0.00 0.00 0.00 4.36 4.45 0.00 0.00 0.00 4.52 0.00 8.83 30.98 36.36 33 ER4c ExonRegion 0 32.26 8.40 94.32 34.66 29.68 20.85 16.39 65.51 57.54 69.58 86.53 70.43 25.11 165.30 233.04 113.70 193.57 50.41 22.58 24.17 533.40 584.31 518.94 34 E4_Db KnownBoundary 0 3.78 0.00 11.12 0.00 3.99 0.00 0.00 8.13 8.74 2.71 0.00 0.00 0.00 7.18 23.49 0.00 4.49 0.00 0.00 3.26 5.68 69.13 45.41 35 E4b_E5a KnownJunction 1 71.72 15.59 106.89 50.51 145.67 65.70 79.36 49.49 61.98 93.48 104.50 104.28 14.28 185.24 182.95 74.77 120.43 80.01 25.98 68.14 521.59 497.28 316.44 36 ER4d ExonRegion 0 15.99 10.35 11.50 5.55 13.78 6.42 10.25 10.94 11.59 9.08 4.67 17.19 15.61 15.36 26.26 16.62 18.98 6.93 9.26 13.78 13.17 91.35 76.00 37 E4_Dc KnownBoundary 0 15.56 12.96 12.27 9.76 9.93 0.00 5.52 9.69 10.21 7.20 2.58 30.46 0.00 9.95 13.97 10.17 12.06 0.00 3.86 3.26 10.44 120.32 84.42 38 ER4e ExonRegion 0 4.07 4.96 7.33 2.63 5.88 0.74 1.60 7.13 4.15 2.24 3.29 18.14 4.99 6.69 8.38 7.58 4.11 0.00 2.06 0.35 8.73 63.33 43.22 39 ER5a ExonRegion 0 66.35 29.45 108.75 27.57 115.64 61.09 103.68 50.31 59.52 92.03 82.46 104.79 40.40 200.20 253.14 83.72 152.72 45.10 11.78 29.76 574.98 646.22 374.37 40 E5_Da KnownBoundary 0 0.00 5.85 30.60 2.06 0.00 0.00 6.27 6.53 8.94 0.00 0.00 0.00 6.82 2.47 4.45 0.00 4.58 0.00 0.00 0.00 8.77 27.92 18.44 41 E5a_E5b KnownJunction 0 0.00 0.00 1.18 0.00 0.00 0.00 0.00 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.55 0.00 0.00 0.00 5.87 8.14 0.00 42 E5a_E6a KnownJunction 0 139.28 79.13 117.50 75.22 92.44 49.57 154.39 73.81 64.90 138.85 68.23 131.74 100.81 255.93 302.24 106.13 182.98 84.27 26.07 109.11 623.77 746.93 401.63 43 ER5b ExonRegion 0 1.62 1.62 25.14 1.68 2.44 0.00 5.36 11.83 10.96 3.51 1.13 0.58 1.37 1.19 4.86 0.00 4.49 0.00 0.00 0.67 6.26 45.79 32.57 44 E5_Ab KnownBoundary 0 6.30 0.00 46.10 0.00 4.33 0.00 0.00 15.77 18.63 5.59 0.00 6.30 6.82 0.00 0.00 0.00 7.39 0.00 0.00 3.26 5.50 88.42 32.69 45 ER5c ExonRegion 0 6.02 2.81 20.24 1.91 6.21 0.00 1.67 8.02 12.89 3.05 0.59 8.61 3.51 1.20 4.79 0.00 4.64 0.00 0.00 0.81 3.73 50.15 35.42 46 E5_Db KnownBoundary 0 25.93 3.29 15.52 0.00 0.00 0.00 1.94 2.55 6.08 4.62 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 2.75 0.00 46.54 30.82 47 ER5d ExonRegion 0 6.32 0.83 6.91 0.00 0.00 0.00 4.33 2.61 1.08 1.91 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.00 0.00 0.33 0.00 15.68 19.24 48 ER6a ExonRegion 0 177.88 38.08 89.43 40.70 57.65 30.90 64.29 50.49 49.95 94.10 101.68 136.05 51.52 214.19 278.43 88.94 167.25 48.01 25.34 25.18 586.19 672.63 416.60 49 E6_Da KnownBoundary 0 255.45 37.95 107.54 71.92 72.07 19.93 80.42 52.57 83.27 117.20 113.61 175.71 73.86 225.09 360.47 201.66 200.75 81.46 49.79 62.19 612.03 731.86 524.90 50 ER6b ExonRegion 0 182.09 25.89 115.29 39.10 78.22 35.23 52.74 65.14 60.89 113.57 78.82 144.22 83.07 230.70 312.40 126.68 169.08 29.65 16.88 37.64 588.10 757.59 464.12 51 E6_Db KnownBoundary 0 156.03 34.53 135.00 58.83 66.98 41.74 76.18 63.05 81.51 120.48 89.02 145.40 91.55 253.17 426.97 119.03 204.11 32.33 18.07 43.66 625.31 988.06 505.26 52 E6b_E7a KnownJunction 0 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.19 0.00 53 ER6c ExonRegion 0 170.82 30.77 112.03 68.66 81.18 38.19 71.61 84.52 77.43 122.54 103.48 269.59 121.72 268.87 355.16 171.49 227.53 52.46 28.74 41.83 597.87 952.70 629.32 54 E6c_E7a KnownJunction 0 268.27 63.34 147.30 101.25 161.71 63.15 185.79 123.67 103.79 175.95 126.66 294.85 102.27 309.55 384.70 230.79 277.05 73.83 43.01 128.15 795.32 1103.18 667.11 55 ER7a ExonRegion 0 201.69 57.24 145.46 72.97 158.98 96.69 127.57 105.40 78.56 163.19 163.01 378.47 189.56 299.07 400.19 181.80 269.44 46.19 18.78 65.20 828.32 1264.35 683.38 56 E7_Da KnownBoundary 0 230.71 91.89 181.16 119.10 193.89 98.98 187.91 151.28 90.05 211.75 194.68 407.23 184.57 294.07 391.50 184.99 312.58 114.08 49.60 130.14 698.58 1359.44 682.48 57 E7a_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 ER7b ExonRegion 0 267.87 61.49 157.02 88.29 138.97 71.23 104.65 118.72 93.18 166.07 135.96 462.23 242.03 293.20 406.35 210.86 243.14 80.30 37.92 49.59 643.37 1230.28 794.36 59 E7b_E8a KnownJunction 0 421.48 89.92 240.80 140.11 180.65 117.66 145.52 204.47 124.56 239.88 202.00 413.98 284.40 331.27 491.50 225.92 344.18 142.10 22.02 53.88 772.40 1545.96 916.80 60 ER7c ExonRegion 0 337.58 71.79 188.03 84.50 116.93 91.32 113.73 155.30 96.52 193.02 196.58 425.37 254.67 350.32 482.62 201.51 299.89 93.03 25.96 34.36 769.76 1606.50 913.88 61 E8_Ab NovelBoundary 0 150.62 15.59 117.74 44.08 61.21 36.17 72.74 89.95 46.82 106.83 52.33 159.65 70.13 106.60 156.62 77.59 97.99 33.66 3.86 17.26 265.46 578.84 369.79 62 ER8a ExonRegion 0 315.36 62.43 196.43 80.41 133.79 91.14 129.35 172.50 93.00 200.48 188.84 445.94 255.14 332.94 519.03 205.67 299.06 82.59 18.48 34.47 772.40 1480.34 865.72 63 ER8b ExonRegion 0 282.99 48.46 177.88 95.21 184.97 72.09 126.91 120.42 101.22 170.96 147.15 438.00 235.21 279.17 439.23 198.30 299.30 65.44 37.10 36.70 714.39 1210.59 755.68 64 E8a_E9a KnownJunction 0 438.97 67.55 244.79 141.04 263.75 132.99 177.89 165.61 143.60 207.40 177.41 395.83 248.85 350.52 453.18 306.42 282.84 154.12 76.52 100.54 791.37 1681.29 916.89 65 I8_SR1 SilentIntronRegion 0 10.27 0.00 2.47 0.58 6.97 2.04 0.00 4.65 10.31 1.24 0.00 4.97 2.77 1.04 5.04 2.44 0.00 0.00 0.00 0.00 3.68 82.01 60.71 66 I8_AR1 ActiveIntronRegion 0 14.46 2.49 7.34 1.07 3.75 0.64 3.48 4.97 5.48 2.10 0.68 4.64 4.21 1.14 6.34 0.52 3.46 0.00 1.12 0.37 2.30 58.37 32.39 67 E9_Aa NovelBoundary 0 65.12 6.38 25.04 8.89 3.99 0.00 6.18 19.43 7.67 4.92 2.68 6.30 0.00 4.71 9.27 0.00 3.55 0.00 0.00 0.00 8.65 102.20 66.92 68 ER9a ExonRegion 0 282.17 75.58 197.78 93.04 139.84 83.15 136.67 123.06 88.24 133.15 128.24 371.80 231.25 291.22 530.34 218.45 274.95 73.69 46.09 40.02 778.73 1133.81 922.24 69 E9_Da KnownBoundary 1 248.71 61.90 173.18 100.02 98.64 76.89 156.34 113.57 87.21 120.56 75.65 402.73 232.94 201.78 446.01 127.06 145.39 90.49 31.44 77.53 507.38 704.68 522.42 70 E9a_E10a KnownJunction 0 13.19 2.63 9.99 9.92 12.99 0.00 7.86 3.82 1.33 4.00 6.69 6.30 20.29 11.65 42.15 7.86 4.77 0.00 7.91 0.00 16.87 8.70 3.50 71 ER9b ExonRegion 0 175.97 43.25 114.59 48.42 123.91 42.52 79.17 99.09 53.63 99.37 70.17 224.79 107.23 145.33 312.11 83.82 134.27 16.78 20.59 36.67 287.14 726.30 383.46 72 ER9c ExonRegion 0 46.56 5.08 5.67 0.85 14.38 4.36 8.27 1.73 0.00 3.30 1.45 5.41 15.24 20.50 36.99 5.94 7.01 0.00 0.00 0.00 16.25 36.46 21.29 73 I9_AR3 ActiveIntronRegion 0 18.22 3.40 2.73 5.87 8.93 1.81 5.00 2.82 6.75 2.35 0.00 4.06 1.99 3.55 2.26 0.30 0.00 1.10 1.59 1.27 2.20 9.29 4.29 74 ER10a ExonRegion 0 19.34 2.00 9.55 8.71 10.57 2.04 6.68 3.17 3.73 5.61 2.00 13.26 5.57 5.49 13.24 1.22 2.12 0.26 1.93 1.45 5.77 20.54 4.10