Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CD274 Gene 0 24.10 0.87 1.60 2.47 14.26 4.19 4.42 8.27 12.26 3.11 209.47 469.05 429.30 308.49 226.62 166.08 208.83 0.22 0.16 0.48 3.12 5.77 3.83 2 381577 Transcript 0 20.02 0.70 1.33 1.97 8.87 3.12 3.47 5.79 7.37 1.93 110.63 282.65 279.81 170.66 162.20 96.71 109.93 0.11 0.08 0.27 1.44 4.23 2.86 3 381573 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 498261 Transcript 1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.08 34.14 16.88 35.26 6.68 10.60 7.85 0.00 0.00 0.00 0.00 0.00 0.00 5 474218 Transcript 0 2.71 0.00 0.00 0.00 3.68 0.00 0.57 2.54 0.34 0.00 52.55 57.84 63.46 17.70 21.57 7.65 23.95 0.00 0.00 0.00 0.00 0.30 0.00 6 492923 Transcript 1 2.26 0.00 0.61 0.86 3.12 0.31 1.10 1.79 1.63 2.28 63.71 125.81 105.66 148.67 16.74 63.03 78.35 0.00 0.00 0.70 3.31 0.69 3.16 7 IG2_AR1 ActiveIntergenicRegion 0 3.58 5.19 0.00 0.00 0.00 13.66 0.00 0.09 1.09 1.40 8.76 1.19 9.14 6.58 7.50 16.91 13.49 1.62 4.72 1.36 1.94 2.59 10.03 8 IG2_SR1 SilentIntergenicRegion 0 3.50 0.68 1.81 0.94 1.94 2.00 0.61 2.20 5.38 5.87 35.69 45.41 26.38 13.21 9.28 33.24 22.94 2.61 0.91 1.30 1.89 1.18 3.70 9 IG2_AR3 ActiveIntergenicRegion 0 1.15 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.58 0.07 3.94 8.03 0.00 14.59 10.03 5.29 5.32 0.00 0.00 0.00 0.00 0.00 0.00 10 ER1a ExonRegion 0 0.73 0.00 0.00 0.08 0.15 0.00 0.11 0.00 0.25 0.00 19.16 0.00 7.64 42.18 15.50 30.15 21.88 0.00 0.00 0.00 0.50 0.00 1.17 11 E1_Ab KnownBoundary 0 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 36.17 0.00 20.13 86.00 36.10 58.28 44.13 0.00 0.00 0.00 2.35 0.00 0.00 12 ER1b ExonRegion 1 6.35 0.00 0.00 1.36 5.35 0.00 3.97 1.35 3.71 0.00 199.30 3.98 11.66 440.49 122.87 171.66 178.16 0.00 0.00 0.00 2.20 0.00 5.87 13 E1a_E2a KnownJunction 1 6.37 0.00 0.00 2.06 7.47 0.00 5.83 2.46 5.38 0.00 256.43 11.70 6.82 199.01 115.83 191.57 222.07 0.00 0.00 0.00 0.00 0.00 3.24 14 I1_AR1 ActiveIntronRegion 1 4.25 0.00 0.59 2.10 0.92 0.63 0.45 1.38 0.63 0.58 31.47 91.73 111.71 34.32 25.94 17.93 54.37 0.94 0.00 0.00 0.00 0.71 0.00 15 I1_SR2 SilentIntronRegion 0 0.33 0.00 0.04 0.05 0.77 0.32 0.38 0.30 0.37 0.00 16.93 94.07 84.00 16.92 9.85 10.33 18.05 0.06 0.28 0.05 0.05 0.23 0.06 16 ER2a ExonRegion 1 4.23 0.00 0.00 1.36 4.64 0.00 3.44 1.73 3.71 0.00 204.37 40.70 40.33 191.32 73.11 157.92 183.97 0.00 0.00 0.00 0.88 0.00 2.74 17 ER2b ExonRegion 0 2.08 0.00 0.00 0.59 0.00 3.81 0.00 4.88 7.39 0.00 121.77 131.67 140.98 70.44 49.95 90.27 88.15 0.00 0.00 0.00 0.00 0.00 0.00 18 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.19 10.13 0.00 81.23 122.74 92.36 40.32 29.05 60.67 54.60 0.00 0.00 0.00 0.00 0.00 0.00 19 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER3a ExonRegion 0 2.00 0.00 0.00 1.35 2.72 1.47 0.71 6.63 9.82 1.68 295.28 402.64 272.48 286.18 126.19 159.56 236.69 0.30 0.00 1.06 2.86 2.05 2.45 21 E3_Ab KnownBoundary 0 22.97 0.00 0.00 0.00 0.00 2.10 1.81 6.94 21.09 3.30 442.59 449.10 293.97 407.27 217.32 271.72 335.67 2.45 0.00 0.00 5.81 5.20 0.00 22 ER3b ExonRegion 0 13.87 0.00 0.27 0.00 4.83 0.25 2.46 5.76 15.51 2.93 399.09 413.82 263.03 500.50 255.07 260.89 275.35 1.39 0.00 2.01 14.39 8.74 0.00 23 E3a_E4a KnownJunction 1 7.33 0.00 1.15 0.00 7.81 0.00 2.25 4.07 17.51 3.28 303.66 589.54 198.53 532.17 253.04 239.08 224.31 0.00 0.00 3.07 18.10 11.27 0.00 24 I3 Intron 0 3.09 0.28 0.28 0.31 1.19 0.48 0.73 0.63 1.24 0.45 58.15 146.14 144.03 39.69 14.23 27.57 38.07 0.00 0.20 0.16 1.08 1.44 0.72 25 I3_AR1 ActiveIntronRegion 0 1.61 0.00 0.23 0.26 1.14 0.84 0.00 0.33 0.70 1.35 55.25 147.50 142.55 41.43 11.62 21.52 28.85 0.00 0.00 0.00 1.17 0.79 1.11 26 I3_SR2 SilentIntronRegion 0 4.21 0.43 0.43 0.42 0.89 0.64 0.83 0.88 1.83 0.26 80.20 168.20 164.16 47.02 18.16 37.55 50.14 0.00 0.33 0.22 1.60 1.80 0.84 27 I3_SR3 SilentIntronRegion 0 1.46 0.11 0.00 0.11 1.85 0.00 0.85 0.27 0.29 0.45 15.02 102.09 105.05 24.43 7.43 9.97 17.74 0.00 0.00 0.11 0.00 1.00 0.31 28 ER4a ExonRegion 0 10.19 0.00 0.82 1.63 7.56 1.28 2.88 7.81 11.13 2.57 343.51 486.34 352.26 497.31 204.96 246.80 285.46 0.87 0.00 0.35 7.76 5.35 1.47 29 E4_Ab KnownBoundary 0 2.74 0.00 0.00 3.73 0.00 7.15 3.97 6.57 7.15 0.00 323.50 394.63 517.82 430.52 198.28 211.23 267.69 2.49 0.00 0.00 6.05 0.00 0.00 30 ER4b ExonRegion 0 3.91 0.00 0.19 3.35 2.68 4.06 2.01 4.14 9.39 1.42 289.00 425.99 500.55 433.39 168.62 181.57 304.18 1.57 0.00 0.00 5.21 0.00 0.00 31 E4_Da KnownBoundary 0 7.56 0.00 0.00 1.86 4.07 0.00 0.00 0.00 9.55 1.67 196.47 365.52 540.55 325.39 159.84 143.47 252.73 0.00 0.00 0.00 2.59 0.00 0.00 32 E4a_E4c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35.43 68.27 33.76 63.51 13.35 13.07 15.71 0.00 0.00 0.00 0.00 0.00 0.00 33 ER4c ExonRegion 0 2.61 0.00 0.81 0.97 10.98 0.84 1.98 6.38 12.72 3.57 333.63 344.94 479.39 467.73 196.17 263.71 342.98 1.31 0.00 0.00 4.61 4.60 0.22 34 E4_Ac KnownBoundary 1 3.56 0.00 0.00 1.90 24.45 2.44 0.00 6.12 11.43 2.36 321.40 408.88 497.69 521.52 177.14 286.16 370.08 0.00 0.00 0.00 5.56 9.31 0.00 35 ER4d ExonRegion 0 2.99 0.00 0.00 0.74 15.53 1.04 2.27 8.64 15.60 2.19 376.79 385.13 434.44 511.00 183.91 239.26 325.57 0.00 0.00 0.00 1.92 5.75 5.55 36 E4_Db KnownBoundary 0 0.00 0.00 0.00 0.00 3.82 0.00 0.00 2.09 1.79 0.00 116.56 80.43 53.73 22.07 28.31 26.57 8.04 0.00 0.00 0.00 0.00 2.94 0.00 37 E4b_E5a KnownJunction 1 0.00 0.00 0.00 0.00 16.21 2.61 3.80 6.53 14.38 2.90 242.96 511.82 481.79 436.23 115.71 167.05 255.17 0.00 0.00 0.00 0.00 3.12 7.85 38 ER4e ExonRegion 0 2.71 0.00 0.00 0.00 3.68 0.00 0.57 2.54 0.34 0.00 52.55 57.84 63.46 17.70 21.57 7.65 23.95 0.00 0.00 0.00 0.00 0.30 0.00 39 E4_Dc NovelBoundary 0 14.08 0.00 0.00 0.00 0.00 0.00 0.00 1.73 1.79 0.00 36.64 55.67 43.18 9.89 5.07 17.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 ER5a ExonRegion 0 1.29 0.00 0.00 0.93 20.56 1.61 3.62 3.20 11.33 2.49 229.83 506.34 576.53 384.76 139.54 135.20 344.34 0.00 0.00 0.00 6.61 5.29 10.89 41 E5_Da KnownBoundary 1 3.78 0.00 0.00 1.96 11.88 0.00 8.39 0.00 6.71 1.48 233.59 513.62 564.09 382.66 110.88 122.79 398.69 0.00 0.00 0.00 4.70 5.39 0.00 42 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.74 0.00 0.00 7.00 0.00 8.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER5b ExonRegion 1 3.92 0.00 0.11 1.71 7.95 2.00 2.55 5.13 8.76 3.58 264.40 546.03 505.75 409.54 136.32 207.07 291.71 0.00 0.00 0.06 5.72 4.48 3.64 44 E5_Db KnownBoundary 1 3.78 0.00 0.00 2.06 0.00 0.00 0.00 1.81 2.92 0.00 70.70 215.17 131.16 178.53 4.45 74.77 67.70 0.00 0.00 0.00 0.00 0.00 7.68 45 E5b_E6a KnownJunction 0 3.19 0.00 0.00 0.00 8.06 8.63 1.94 7.06 13.86 1.32 175.78 503.26 487.63 277.71 166.14 197.98 175.22 0.00 0.00 0.00 0.00 11.94 0.00 46 E5b_E7a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.77 0.00 15.00 0.00 0.00 10.24 0.00 0.00 8.79 0.00 0.00 0.00 0.00 0.00 0.00 47 ER5c ExonRegion 1 2.26 0.00 0.61 0.86 3.12 0.31 1.10 1.79 1.63 2.28 63.71 125.81 105.66 148.67 16.74 63.03 78.35 0.00 0.00 0.70 3.31 0.69 3.16 48 E5_Dc NovelBoundary 0 6.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 78.34 77.13 96.10 113.07 43.39 65.54 72.37 0.00 0.00 0.00 2.90 9.31 3.84 49 I5 Intron 1 4.91 0.00 0.43 0.85 3.35 1.20 1.97 1.07 2.63 1.32 55.21 195.78 158.47 97.28 25.66 37.14 50.68 0.00 0.00 0.00 0.66 2.73 0.52 50 I5_AR1 ActiveIntronRegion 1 3.86 0.00 0.05 1.03 1.35 0.00 0.89 1.32 1.75 4.69 41.20 118.48 96.17 78.58 18.96 24.28 41.02 0.00 0.00 0.00 0.50 0.00 1.51 51 I5_SR1 SilentIntronRegion 1 5.07 0.00 0.49 0.82 3.62 1.36 2.12 1.05 2.75 0.87 57.22 206.64 167.24 100.04 26.63 38.95 52.11 0.00 0.00 0.00 0.68 3.10 0.39 52 E6_Aa NovelBoundary 1 10.00 0.00 1.77 0.00 3.99 0.00 2.25 1.64 1.62 0.00 102.66 422.09 478.54 139.80 37.46 94.16 92.10 0.00 0.00 2.68 2.35 0.00 0.00 53 ER6a ExonRegion 0 3.32 0.00 1.23 1.36 18.28 2.45 1.28 3.26 11.20 2.37 253.85 620.20 590.24 418.21 185.63 214.84 260.11 0.00 0.00 0.00 0.29 3.33 1.47 54 E6_Da NovelBoundary 0 0.00 0.00 0.00 5.36 0.00 5.79 4.20 0.00 7.84 0.00 61.07 286.14 168.82 110.13 33.01 61.86 53.20 0.00 0.00 0.00 0.00 2.88 0.00 55 E6a_E7a KnownJunction 0 0.00 0.00 1.21 3.16 32.34 0.00 2.25 3.66 7.00 3.17 168.67 450.90 436.82 400.91 167.50 145.86 160.54 0.00 0.00 0.00 0.00 2.51 3.84 56 I6 Intron 1 6.14 0.30 0.13 0.29 4.08 0.80 0.96 0.93 2.14 0.74 68.57 196.16 196.88 124.86 38.11 60.16 70.17 0.00 0.46 0.00 1.28 0.91 2.34 57 I6_SR1 SilentIntronRegion 1 7.47 0.25 0.23 0.02 4.55 0.68 0.99 1.00 2.89 0.42 80.55 218.64 205.00 126.34 36.66 63.81 85.20 0.00 0.74 0.00 0.86 0.98 2.54 58 I6_AR1 ActiveIntronRegion 1 4.28 0.36 0.00 0.69 3.42 0.97 0.92 0.85 1.08 1.21 51.87 165.26 186.58 123.59 40.44 55.35 49.10 0.00 0.07 0.00 1.89 0.80 2.08 59 ER7a ExonRegion 0 9.49 1.43 0.45 0.81 20.41 0.00 2.01 5.06 8.10 4.59 195.72 490.83 373.47 388.89 179.56 171.50 199.15 0.00 0.00 0.00 5.88 5.86 10.55 60 ER7b ExonRegion 0 19.11 0.96 0.92 0.97 21.54 4.27 2.91 5.59 15.89 3.18 230.24 524.39 384.88 394.14 214.57 225.03 278.98 0.00 0.53 0.29 4.69 4.23 4.36 61 E7_Db KnownBoundary 0 20.52 0.00 0.00 2.80 31.92 0.00 6.05 3.66 16.35 9.46 220.16 630.96 765.86 281.07 252.18 189.78 248.25 0.00 0.00 3.20 0.00 5.57 8.37 62 ER7c ExonRegion 0 39.32 1.40 2.65 3.86 17.59 6.24 6.83 11.58 14.49 3.85 202.10 565.30 551.99 299.14 308.90 163.27 197.98 0.23 0.16 0.54 2.39 8.47 4.54