Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MLANA Gene 0 9.31 9.76 5.98 9.07 10.71 3.55 9.51 7.58 6.61 6.96 5.50 10.69 18.40 10.75 13.31 11.56 13.93 10.13 11.59 14.86 3.94 2.96 7.39 2 381477 Transcript 0 4.99 4.44 3.42 5.37 5.78 1.82 5.79 3.86 3.70 4.25 2.72 4.94 8.38 4.81 7.33 5.74 7.16 5.27 6.89 7.69 1.92 1.39 4.13 3 381476 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 381471 Transcript 0 0.84 0.58 0.18 0.00 0.00 0.00 0.98 1.61 0.75 1.54 0.55 0.51 0.00 1.37 1.73 2.79 1.10 2.82 0.80 1.20 1.04 0.30 0.00 5 482341 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 2.60 0.00 2.27 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 490518 Transcript 0 3.05 1.62 0.57 0.67 0.43 0.00 1.71 0.41 0.87 0.28 0.65 1.69 3.69 4.09 2.44 2.86 2.64 3.06 2.08 3.41 1.06 0.33 0.47 7 ER1a ExonRegion 0 0.59 0.00 0.63 1.82 0.00 0.00 2.52 0.00 0.83 2.44 0.00 0.00 1.84 0.82 2.11 1.42 1.57 1.31 4.50 2.03 0.00 0.00 0.00 8 E1_Ac NovelBoundary 0 6.67 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 10.88 0.00 0.00 0.00 9.13 3.26 0.00 0.00 4.35 9 E1a_E1d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER1b ExonRegion 0 2.12 0.00 1.23 0.88 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 1.62 5.80 0.00 0.00 0.00 7.96 0.00 0.00 0.00 0.00 12 ER1c ExonRegion 0 1.06 0.00 0.61 0.00 0.00 0.00 0.00 0.12 0.00 0.74 0.00 0.00 0.00 3.83 2.07 0.64 0.00 0.00 4.10 0.00 0.00 0.00 0.00 13 ER1d ExonRegion 0 1.46 1.74 0.46 0.00 0.00 0.00 2.27 2.60 0.79 2.90 1.38 1.53 0.00 2.72 2.66 3.75 1.41 5.14 0.83 2.11 0.94 0.89 0.00 14 E1_Ad KnownBoundary 0 3.63 0.00 1.83 0.00 0.00 0.00 0.00 2.34 0.00 2.79 4.26 0.00 0.00 0.00 0.00 0.00 0.00 4.27 9.51 5.69 0.00 0.00 0.00 15 ER1e ExonRegion 0 1.04 0.83 1.54 0.72 0.00 0.00 0.47 3.56 1.56 1.75 0.71 3.79 0.00 3.10 5.70 3.05 0.99 4.16 6.08 3.95 2.34 0.74 1.04 16 E1_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.52 1.77 0.00 2.42 0.00 0.00 0.00 0.00 3.25 3.65 7.92 0.00 3.26 0.00 0.00 0.00 17 E1b_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER1f ExonRegion 0 1.05 0.00 0.07 0.00 0.00 0.00 0.66 2.22 1.46 1.71 0.28 0.00 0.00 1.39 2.54 4.62 1.89 3.32 1.58 1.49 2.18 0.00 0.00 19 E1_Dc NovelBoundary 0 16.30 0.00 0.00 3.33 7.13 2.90 3.53 6.74 0.00 2.34 0.00 18.91 0.00 2.88 0.00 0.00 0.00 2.57 0.00 2.68 3.09 0.00 3.16 20 E1c_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E2_Aa NovelBoundary 0 0.00 4.87 1.83 3.80 8.40 4.43 4.15 6.45 9.37 12.20 4.26 6.30 0.00 4.94 4.45 0.00 0.00 13.31 4.80 15.02 2.90 7.65 0.00 22 ER2a ExonRegion 0 0.00 6.63 1.23 0.00 2.20 2.07 0.00 3.12 1.87 3.27 4.24 2.93 10.44 3.72 7.91 6.52 2.72 4.95 4.32 3.43 3.66 0.00 0.57 23 E2_Ab KnownBoundary 0 0.00 9.54 2.96 0.00 0.00 2.78 0.00 4.23 6.60 6.23 6.90 0.00 13.15 5.47 10.63 12.30 0.00 6.05 4.71 6.39 8.83 0.00 3.59 24 ER2b ExonRegion 0 0.00 2.29 0.31 0.07 0.20 1.65 0.00 1.69 1.73 3.70 0.87 0.00 2.58 3.41 3.34 4.90 0.00 2.73 1.43 3.14 2.75 0.00 2.86 25 E2_Da NovelBoundary 0 0.00 12.83 3.43 0.00 8.15 2.67 1.85 0.00 9.52 3.22 5.37 0.00 33.60 4.71 4.45 4.36 0.00 8.50 0.00 21.92 5.68 0.00 12.63 26 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 Ix Intron 0 12.44 5.84 3.61 3.07 8.84 4.47 3.56 7.67 6.19 5.51 7.10 10.26 16.94 12.89 12.94 11.79 13.40 13.41 12.93 13.92 6.09 3.67 5.21 28 Ix_SR1 SilentIntronRegion 0 11.11 5.01 3.92 2.88 7.74 3.49 2.91 6.97 4.39 5.27 4.66 8.82 12.35 7.67 11.47 8.76 9.55 9.48 10.83 9.98 4.25 2.51 3.30 29 Ix_AR1 ActiveIntronRegion 0 18.73 4.70 2.98 2.80 18.15 1.16 6.01 7.22 1.52 1.89 15.62 10.18 42.34 18.26 14.74 11.00 15.66 4.57 4.99 20.73 1.76 0.00 3.02 30 Ix_AR2 ActiveIntronRegion 0 25.17 10.09 3.52 3.45 7.09 3.30 3.50 8.62 7.03 6.80 9.11 10.82 19.70 21.86 25.01 15.48 16.62 22.54 21.04 24.51 6.56 6.30 8.34 31 Ix_SR2 SilentIntronRegion 0 10.72 5.40 2.86 3.04 10.70 5.99 4.55 8.42 8.90 5.39 10.33 10.77 21.05 17.78 11.45 16.81 18.74 16.67 13.46 15.95 9.30 4.60 8.53 32 Ix_AR3 ActiveIntronRegion 0 8.67 9.31 4.16 4.66 11.36 11.56 5.01 10.24 13.50 7.89 11.20 22.45 31.62 27.58 12.62 14.69 23.22 27.49 21.35 24.44 11.96 8.40 5.56 33 E3_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 3.82 2.44 8.57 0.00 6.39 5.10 5.37 13.95 19.32 9.12 8.90 4.10 12.81 12.02 8.47 12.14 8.83 0.00 3.84 34 E3_Ab NovelBoundary 0 0.00 0.00 3.31 8.79 21.99 8.12 8.70 11.46 13.60 4.11 4.11 0.00 18.51 13.30 4.45 8.72 13.09 10.61 4.05 11.06 11.55 0.00 0.00 35 ER3a ExonRegion 0 0.53 0.00 0.77 1.36 5.35 1.83 0.00 0.00 0.31 1.58 3.62 3.25 9.38 2.44 1.45 0.00 7.43 0.00 0.00 5.59 0.00 0.00 0.00 36 ER3b ExonRegion 0 2.38 2.33 3.08 3.34 5.41 3.98 1.52 1.48 0.06 6.62 6.30 8.76 28.14 21.37 8.28 13.63 12.57 3.74 10.88 24.86 5.05 4.71 6.63 37 E3_Da NovelBoundary 0 2.89 6.38 1.36 9.19 0.00 5.34 0.00 4.23 7.99 10.85 9.74 13.50 61.85 27.84 26.45 17.00 39.93 47.42 20.33 20.26 20.39 7.59 3.67 38 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 Ix Intron 0 6.26 6.51 1.36 5.50 7.91 8.13 6.52 6.35 7.26 6.32 10.48 12.49 37.11 26.90 9.42 10.98 26.84 13.13 10.20 19.40 8.14 3.59 8.68 41 Ix_AR1 ActiveIntronRegion 0 6.29 6.54 1.36 5.53 7.95 8.17 6.56 6.37 7.29 6.35 10.53 12.55 37.29 27.03 9.46 11.04 26.97 13.19 10.25 19.49 8.18 3.61 8.72 42 E4_Aa NovelBoundary 0 6.00 5.92 1.45 1.86 7.81 7.95 9.32 3.61 9.69 3.76 16.27 0.00 38.80 28.02 0.00 20.85 8.88 8.83 8.38 10.67 8.96 3.12 7.09 43 ER4a ExonRegion 0 9.16 4.87 1.71 2.02 1.29 0.00 5.12 1.24 2.61 0.84 1.95 5.06 11.06 12.26 7.31 8.58 7.91 9.17 6.25 10.24 3.18 1.00 1.41 44 E4_Da NovelBoundary 0 150.69 190.03 140.77 96.29 113.67 91.25 134.08 102.48 118.34 103.45 55.17 108.49 88.96 93.06 84.55 159.27 89.85 160.80 105.41 132.76 81.30 18.43 135.22 45 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 Ix Intron 0 12.80 10.69 3.12 4.00 8.44 3.62 6.09 6.77 7.99 6.07 9.15 20.99 23.53 17.48 11.35 15.24 18.22 12.68 11.29 11.47 8.97 4.66 12.35 47 Ix_SR1 SilentIntronRegion 0 12.83 10.71 3.13 4.01 8.46 3.62 6.10 6.79 8.01 6.08 9.17 21.04 23.60 17.51 11.38 15.28 18.27 12.71 11.32 11.50 8.99 4.67 12.38 48 Ix Intron 0 8.56 9.03 3.04 5.77 8.89 3.21 7.52 5.32 6.44 7.45 4.65 15.23 24.85 10.51 7.91 7.50 10.04 6.33 7.32 12.38 3.91 3.70 3.46 49 Ix_AR1 ActiveIntronRegion 0 11.99 6.85 2.58 3.83 9.32 3.24 6.50 8.61 9.82 10.05 6.24 8.60 15.62 17.20 9.90 12.36 18.97 13.12 7.94 18.53 10.16 4.21 6.89 50 Ix_SR1 SilentIntronRegion 0 7.86 9.49 3.14 6.17 8.82 3.21 7.74 4.65 5.75 6.93 4.33 16.61 26.78 9.15 7.51 6.51 8.22 4.94 7.20 11.14 2.63 3.60 2.76 51 E5_Aa NovelBoundary 0 3.19 2.50 5.53 7.49 16.64 0.00 5.43 2.30 6.45 5.00 10.16 50.42 56.49 4.53 14.83 0.00 13.37 6.55 10.82 9.59 0.00 2.57 3.76 52 ER5a ExonRegion 0 2.86 11.26 4.80 4.02 5.73 2.93 3.60 4.61 3.37 4.05 4.07 10.06 17.32 8.01 4.56 9.12 13.12 2.84 10.73 9.99 1.01 1.81 1.34 53 E5_Da KnownBoundary 0 0.00 14.27 3.02 9.06 3.90 4.77 0.00 0.00 7.84 8.41 5.21 31.36 6.82 12.54 10.51 8.72 8.42 7.67 13.65 20.71 0.00 2.27 0.00 54 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 ER5b ExonRegion 0 3.38 20.52 2.51 3.53 5.93 1.19 5.26 3.44 4.36 4.44 2.68 13.62 23.70 6.68 6.03 4.08 5.44 4.00 5.45 8.33 0.59 2.29 0.00 56 E5_Db NovelBoundary 0 0.00 6.51 5.62 3.80 7.56 0.00 0.00 2.26 0.00 0.99 2.37 5.85 6.17 10.30 6.06 0.00 0.00 0.00 0.00 6.52 0.00 0.00 3.93 57 ER5c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 2.60 0.00 2.27 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 Ix Intron 0 4.53 9.34 2.89 7.24 7.84 2.03 6.71 3.88 3.79 2.30 2.91 10.29 17.68 8.27 7.99 4.24 9.41 3.65 5.30 9.60 1.05 2.31 2.79 59 Ix_SR1 SilentIntronRegion 0 4.54 9.37 2.90 7.26 7.86 2.04 6.73 3.89 3.80 2.31 2.92 10.31 17.73 8.29 8.01 4.25 9.44 3.66 5.31 9.63 1.05 2.32 2.80 60 E6_Aa NovelBoundary 0 3.33 8.29 9.58 3.03 0.00 2.90 6.58 4.27 11.46 2.63 2.58 25.21 39.93 14.36 17.80 16.41 13.00 22.76 16.85 9.65 5.93 6.25 4.27 61 ER6a ExonRegion 0 7.00 3.87 1.59 7.39 5.37 2.43 6.08 4.54 3.41 2.99 3.31 7.55 22.40 12.08 8.05 10.81 14.58 8.64 9.40 10.61 1.84 2.74 3.23 62 E6_Da KnownBoundary 0 3.33 0.00 1.77 3.13 0.00 0.00 2.16 4.27 3.39 1.53 2.63 0.00 6.01 0.00 0.00 3.93 3.93 0.00 7.91 10.23 0.00 0.00 0.00 63 E6_Db KnownBoundary 0 0.00 5.92 5.29 0.00 3.40 0.00 1.90 0.00 0.00 2.36 2.16 0.00 6.33 0.00 4.45 0.00 0.00 1.95 0.00 0.00 0.00 2.88 0.00 64 ER6b ExonRegion 0 2.12 4.07 7.35 5.45 8.03 1.83 9.27 5.19 3.71 4.59 7.73 8.66 14.07 4.06 5.80 4.46 11.55 3.70 6.37 11.70 0.00 4.17 2.94 65 ER6c ExonRegion 0 14.38 13.33 9.62 14.29 17.33 5.47 14.85 11.58 10.28 10.31 8.17 14.83 23.30 13.61 19.88 15.82 19.92 14.50 16.18 21.05 5.75 4.16 12.40