Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C9orf82 Gene 0 13.23 13.13 10.28 11.29 14.05 20.36 17.32 15.12 11.25 27.92 46.29 37.17 42.00 50.68 29.98 32.80 43.65 15.00 15.57 21.43 12.52 21.59 17.19 2 333916 Transcript 0 17.16 13.25 13.80 21.62 24.81 41.56 28.20 21.83 18.73 49.25 87.25 98.78 113.29 89.08 56.25 65.08 73.23 22.75 32.57 31.01 17.17 48.72 41.42 3 495958 Transcript 0 0.00 0.00 4.46 0.00 4.07 0.00 0.00 1.68 1.30 2.23 2.00 0.00 0.00 5.06 4.45 4.02 11.78 1.78 0.00 3.26 0.00 3.12 0.00 4 483493 Transcript 0 5.60 6.85 4.37 6.52 4.66 7.47 9.04 4.77 3.47 12.45 16.79 4.40 7.96 10.55 11.46 12.66 12.23 10.81 4.74 9.15 5.47 4.22 4.13 5 ER1a ExonRegion 0 8.21 9.91 8.33 4.69 5.43 24.20 11.21 15.17 8.48 26.64 68.86 1.81 5.58 36.70 30.31 48.35 46.33 39.43 17.32 31.83 32.46 12.62 27.80 6 E1_Ab KnownBoundary 0 6.45 2.63 10.08 4.03 0.00 0.00 4.24 17.17 10.45 35.81 92.02 0.00 5.84 51.09 15.20 28.20 116.78 10.49 26.64 35.60 72.16 9.00 7.60 7 ER1b ExonRegion 0 5.34 5.07 13.61 6.91 6.86 15.27 10.31 14.71 11.74 36.72 41.11 11.49 15.54 80.92 48.19 64.86 54.28 21.00 16.63 39.13 32.98 27.29 37.49 8 E1_Ac NovelBoundary 0 2.89 2.50 7.86 7.72 3.14 35.15 26.63 21.81 17.30 33.34 44.75 18.01 5.68 42.56 9.52 16.66 27.12 19.73 19.48 22.95 18.72 22.17 0.00 9 E1_Da NovelBoundary 0 5.78 18.94 1.83 3.66 0.00 5.39 6.76 5.91 6.05 13.03 7.53 0.00 0.00 17.01 18.54 11.79 9.16 18.16 4.80 15.53 18.90 0.00 0.00 10 E1a_E2a KnownJunction 0 20.97 27.03 21.23 16.98 4.33 55.93 57.28 26.74 30.32 36.42 81.60 23.26 40.91 162.99 53.40 37.94 85.74 23.50 28.61 31.77 29.65 22.17 12.21 11 ER1c ExonRegion 0 13.40 25.08 19.20 16.35 7.58 63.27 42.37 22.76 31.91 38.61 107.92 21.65 26.58 172.97 44.97 34.67 83.07 24.33 25.48 31.91 31.22 36.11 14.19 12 ER1d ExonRegion 0 4.63 13.26 10.51 7.08 5.25 9.00 13.66 10.72 7.54 18.55 24.96 1.01 5.79 19.01 14.58 25.59 28.01 28.66 8.85 19.11 11.53 3.71 9.84 13 E1_Db NovelBoundary 0 0.00 2.50 2.96 9.46 3.48 0.00 6.36 10.31 11.78 21.22 5.00 0.00 6.82 14.48 8.90 7.52 25.15 33.87 4.80 11.82 14.21 8.63 0.00 14 E1b_E2a KnownJunction 0 3.78 8.81 1.71 12.55 0.00 14.37 7.51 4.23 1.79 15.34 29.85 0.00 0.00 7.12 19.16 15.81 8.79 12.44 4.80 11.57 9.02 4.96 0.00 15 I1 Intron 0 4.45 7.10 4.59 6.19 8.55 4.99 8.89 9.90 7.13 13.50 4.92 17.32 20.29 7.79 9.11 9.32 9.95 3.43 4.33 10.01 1.37 3.45 3.04 16 I1_AR1 ActiveIntronRegion 0 1.71 1.65 0.00 0.00 0.00 1.48 5.36 0.00 0.00 0.00 4.69 15.05 0.00 12.14 4.97 9.62 7.91 0.00 2.53 8.58 3.57 0.00 2.38 17 I1_AR2 ActiveIntronRegion 0 0.96 4.63 2.49 5.54 3.66 3.34 3.00 3.49 5.82 10.12 7.90 4.87 14.45 11.22 2.80 13.53 13.56 8.36 10.15 6.78 4.01 2.85 9.36 18 I1_AR3 ActiveIntronRegion 0 1.62 4.41 6.97 5.68 10.89 6.53 12.12 15.40 13.58 22.82 9.83 23.26 41.68 8.43 10.72 12.85 19.31 3.04 7.29 17.32 2.52 3.71 4.48 19 I1_SR2 SilentIntronRegion 0 5.83 7.44 4.13 6.60 8.07 4.20 8.17 7.95 5.54 9.86 3.32 9.77 12.47 7.70 10.87 7.77 7.81 4.22 3.27 8.13 0.67 3.92 2.00 20 I1_AR4 ActiveIntronRegion 0 4.72 17.21 2.73 13.00 15.64 5.22 13.24 15.56 2.00 18.62 1.34 34.97 13.71 9.37 2.90 6.17 3.30 3.70 3.19 6.22 1.02 2.08 0.00 21 I1_AR5 ActiveIntronRegion 0 6.27 11.28 4.55 6.98 10.05 6.45 9.32 12.13 5.18 14.95 1.93 34.14 20.12 5.02 5.77 7.47 2.96 0.73 1.66 7.19 0.37 2.87 1.95 22 E2_Aa NovelBoundary 0 21.11 27.43 0.00 8.26 8.66 2.56 6.32 5.67 7.52 33.34 2.53 11.85 45.13 7.06 8.90 12.13 4.02 2.07 0.00 12.27 0.00 0.00 0.00 23 ER2a ExonRegion 0 35.49 43.17 28.51 36.55 54.73 60.50 58.97 55.49 42.97 93.31 167.21 113.34 125.88 183.55 84.43 90.83 153.17 40.80 33.82 59.80 36.22 74.15 43.20 24 E2_Da NovelBoundary 0 0.00 6.12 15.05 11.09 17.06 2.33 10.47 5.54 9.66 12.25 6.69 24.31 20.78 14.83 4.45 7.78 20.85 6.72 0.00 16.68 5.00 2.45 8.37 25 E2a_E3a KnownJunction 0 33.56 41.11 17.18 32.46 95.33 59.97 80.24 68.43 60.16 102.91 163.62 174.36 231.15 184.53 103.84 68.70 163.25 22.05 63.53 83.99 24.83 101.46 76.74 26 E2a_E4b KnownJunction 0 0.00 0.00 4.46 0.00 4.07 0.00 0.00 1.68 1.30 2.23 2.00 0.00 0.00 5.06 4.45 4.02 11.78 1.78 0.00 3.26 0.00 3.12 0.00 27 E3_Aa NovelBoundary 0 3.11 5.79 12.24 12.52 6.79 5.05 9.67 10.47 2.84 23.16 14.42 30.46 13.64 7.18 0.00 0.00 8.79 3.73 0.00 12.08 0.00 0.00 7.34 28 ER3a ExonRegion 0 44.32 36.63 28.72 37.26 72.91 75.66 67.01 53.74 44.89 110.45 179.74 186.98 296.35 216.98 119.36 115.39 156.27 26.76 67.79 66.33 25.17 101.26 55.49 29 E3_Da NovelBoundary 0 16.37 17.89 11.62 11.72 7.81 5.79 5.30 16.06 3.33 18.78 5.32 32.86 25.81 0.00 4.82 12.56 0.00 5.26 4.80 5.94 0.00 6.25 0.00 30 E3a_E4a KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 3.53 0.00 0.00 2.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 E3a_E4b KnownJunction 0 38.38 26.71 32.85 60.10 68.34 97.78 70.97 50.15 47.71 120.91 192.89 294.40 334.23 230.44 138.45 146.80 173.35 28.81 80.38 61.17 18.90 133.55 96.37 32 I3_SR1 SilentIntronRegion 0 1.87 15.71 10.08 9.86 10.63 3.24 6.42 10.24 5.28 12.07 0.43 8.77 16.45 2.64 6.13 2.62 0.73 1.83 0.70 5.17 0.00 3.68 2.59 33 E4_Aa NovelBoundary 0 29.12 22.50 7.10 9.52 33.11 2.84 12.01 9.69 3.88 17.00 0.00 13.65 26.62 4.65 0.00 6.84 0.00 0.00 0.00 9.46 0.00 12.00 8.62 34 E4_Ab NovelBoundary 0 10.45 21.77 9.52 8.39 16.21 0.00 21.02 9.00 4.34 11.71 2.32 0.00 6.82 4.83 0.00 0.00 3.74 0.00 4.71 2.62 0.00 0.00 7.77 35 ER4a ExonRegion 0 10.23 5.31 5.24 6.44 13.38 6.52 11.47 4.13 4.53 12.93 12.35 16.60 26.06 16.06 12.09 9.25 12.10 2.16 5.31 5.91 1.35 8.22 6.69 36 ER4b ExonRegion 0 57.68 33.51 42.84 65.35 65.15 73.21 66.32 51.78 59.22 129.23 230.12 220.92 278.21 223.02 161.54 136.40 231.90 34.07 92.67 99.04 27.38 121.21 80.31 37 E4_Da NovelBoundary 0 3.78 6.71 10.44 0.00 3.14 0.00 16.74 8.79 1.07 5.43 4.37 17.56 12.99 2.41 0.00 4.27 4.30 0.00 0.00 8.95 0.00 0.00 0.00 38 E4a_E5a KnownJunction 0 63.94 21.38 36.60 43.48 45.16 61.33 43.99 34.54 49.19 115.83 260.91 136.09 109.90 191.48 119.91 78.18 247.31 17.82 64.75 122.98 28.73 83.95 65.22 39 I4 Intron 0 2.89 6.18 2.70 5.22 5.32 1.71 10.21 5.32 1.94 5.73 1.66 10.71 16.96 0.86 3.05 5.09 5.91 1.76 1.86 10.53 0.26 0.49 2.40 40 I4_SR1 SilentIntronRegion 0 2.89 6.19 2.71 5.23 5.32 1.72 10.23 5.33 1.94 5.74 1.66 10.72 16.99 0.86 3.06 5.10 5.92 1.76 1.86 10.54 0.26 0.49 2.41 41 E5_Aa NovelBoundary 0 7.41 12.30 6.56 11.05 35.57 15.22 35.55 37.83 15.86 18.43 9.95 6.15 19.80 4.94 10.75 3.59 0.00 23.01 0.00 24.03 2.84 0.00 7.00 42 ER5a ExonRegion 0 64.70 50.68 42.07 42.25 74.55 80.00 67.08 61.17 52.50 120.42 238.39 219.10 159.19 218.62 121.23 103.03 211.13 40.32 54.59 113.89 58.90 92.74 58.27 43 E5_Da NovelBoundary 0 80.16 85.31 43.49 50.51 78.44 127.88 89.96 77.88 54.60 119.11 161.51 211.27 199.66 264.17 135.73 135.86 171.48 40.50 51.67 84.82 50.84 87.75 48.91 44 E5_Db NovelBoundary 0 0.00 0.00 1.83 5.03 12.31 0.00 8.88 3.98 3.33 10.29 2.26 20.26 13.64 0.00 0.00 4.36 4.49 0.00 0.00 11.89 0.00 2.57 0.00 45 E5b_E6a KnownJunction 0 86.83 87.81 67.65 102.72 99.07 98.07 118.84 117.80 69.47 198.89 205.47 253.73 221.90 308.14 206.07 179.01 225.25 73.58 106.64 85.20 32.06 133.12 76.66 46 ER5b ExonRegion 0 65.15 81.70 60.79 76.44 87.02 106.36 91.24 105.06 65.41 167.90 214.30 265.79 249.59 305.41 159.70 150.67 203.94 66.84 85.04 85.94 50.78 116.22 62.31 47 I5_AR1 ActiveIntronRegion 0 13.67 10.34 3.94 19.72 11.91 2.98 7.90 7.24 3.38 7.14 3.29 3.55 12.06 1.14 2.95 4.36 3.21 3.24 2.32 6.83 0.80 2.39 0.94 48 E6_Aa NovelBoundary 0 16.89 2.57 5.88 15.08 0.00 0.00 2.25 12.32 3.04 6.77 7.42 6.15 23.86 0.00 0.00 0.00 0.00 13.72 0.00 5.11 2.66 0.00 7.17 49 ER6a ExonRegion 0 28.33 37.69 35.93 41.19 35.91 61.11 48.82 46.05 27.28 75.01 109.14 134.98 132.10 130.37 86.46 94.29 110.15 44.86 53.88 53.89 25.95 60.79 50.04 50 E6_Da KnownBoundary 0 9.41 11.45 0.00 1.70 26.40 34.30 25.44 6.45 1.45 0.00 12.53 0.00 6.66 5.18 0.00 35.20 4.21 22.92 8.66 3.20 0.00 0.00 23.56 51 ER6b ExonRegion 0 4.88 3.12 0.22 0.08 0.67 2.70 2.42 0.18 0.00 0.21 0.00 0.13 0.07 0.10 0.00 0.09 0.00 0.00 0.01 0.02 0.13 0.00 0.08