Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RCL1 Gene 0 48.57 51.46 45.47 22.23 20.45 41.74 15.81 30.61 19.12 36.66 119.62 51.75 45.34 93.37 82.30 90.41 128.25 41.75 49.45 46.14 24.64 31.80 26.07 2 381750 Transcript 0 44.19 41.47 34.83 16.33 21.95 57.00 10.76 11.69 16.48 37.40 165.29 95.73 44.40 119.63 86.77 74.51 145.74 40.10 62.94 37.58 32.14 32.59 20.55 3 381732 Transcript 0 7.74 11.45 12.49 10.05 4.16 2.17 4.41 2.96 4.62 9.90 4.32 3.15 12.62 2.57 8.40 7.26 10.55 4.56 8.37 8.57 0.43 1.71 3.94 4 442869 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 473230 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 381730 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 381728 Transcript 0 0.92 0.29 0.29 0.88 0.39 0.80 0.00 0.37 0.27 0.00 1.12 1.55 1.12 1.59 0.72 3.44 3.83 0.37 1.38 1.23 0.00 0.91 2.13 8 441844 Transcript 0 0.00 0.00 0.00 0.00 2.31 0.56 0.00 0.00 0.00 0.00 0.00 3.29 1.19 1.94 1.52 0.91 5.07 0.00 0.00 1.31 0.68 0.64 1.80 9 448872 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 ER1a ExonRegion 0 6.80 9.26 1.63 0.16 5.45 22.06 7.92 0.34 0.43 2.61 23.93 0.00 0.00 19.59 17.17 18.47 24.63 4.17 8.61 5.24 7.82 5.54 7.29 11 E1_Ab KnownBoundary 0 13.48 9.67 4.70 1.27 7.47 39.92 8.74 6.08 2.86 4.00 44.38 0.00 0.00 7.36 16.32 32.13 43.76 15.71 21.08 11.12 16.99 5.27 20.91 12 E1_Ac KnownBoundary 0 18.08 27.17 7.69 3.30 4.33 64.17 19.96 4.81 3.12 13.30 30.38 0.00 0.00 8.06 21.88 38.71 76.02 14.59 13.37 6.46 8.15 6.06 16.39 13 ER1b ExonRegion 1 30.69 34.57 8.58 1.36 10.70 73.81 23.83 1.73 1.24 9.18 79.73 0.00 0.00 62.53 74.71 60.93 121.31 16.63 28.67 21.28 19.83 14.58 14.68 14 ER1c ExonRegion 1 12.82 16.46 6.54 0.75 4.30 29.31 10.05 3.72 1.42 10.17 33.46 3.84 1.84 17.67 28.63 27.14 51.21 12.57 7.77 11.49 7.83 4.83 11.17 15 E1_Ad KnownBoundary 1 3.70 0.00 11.89 0.00 0.00 11.13 0.00 9.49 7.58 16.25 62.70 12.00 0.00 26.43 29.30 18.54 70.13 17.33 8.28 18.22 17.05 5.76 14.60 16 ER1d ExonRegion 1 5.22 14.70 15.82 13.34 6.19 17.79 3.82 16.99 9.05 24.67 117.37 15.83 17.22 86.70 70.67 103.54 122.84 44.07 44.34 42.04 23.97 27.13 32.26 17 E1a_E2a KnownJunction 0 6.96 37.62 10.64 17.95 15.62 54.51 5.48 14.46 22.74 36.99 87.07 35.71 32.95 132.79 107.55 107.24 153.34 34.99 58.26 75.17 33.85 21.19 52.07 18 ER2a ExonRegion 0 32.22 35.31 39.19 17.81 36.94 90.39 27.47 27.85 21.20 50.53 213.96 44.14 45.73 110.85 101.95 82.19 187.88 51.99 60.21 64.57 34.16 39.85 29.73 19 E2a_E3a KnownJunction 0 54.23 51.37 42.40 27.17 42.36 169.33 35.07 49.17 24.51 52.38 230.11 67.52 85.87 141.92 90.36 113.99 246.00 52.36 92.43 65.39 47.20 55.91 28.08 20 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.73 4.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 3.09 0.00 0.00 21 I2 Intron 0 10.71 7.24 5.36 3.29 3.90 0.85 1.68 2.68 2.34 3.24 0.63 1.04 5.05 0.28 3.29 3.78 3.66 1.09 5.52 3.44 0.05 0.39 1.02 22 I2_SR1 SilentIntronRegion 0 10.98 7.02 5.26 3.29 4.30 0.94 1.76 2.89 2.36 3.03 0.55 0.88 5.53 0.27 3.04 2.80 3.80 1.34 4.63 3.49 0.06 0.42 1.01 23 I2_AR1 ActiveIntronRegion 0 57.78 24.61 10.05 4.09 8.03 0.00 5.30 2.25 2.47 5.73 0.00 0.00 0.00 0.00 8.70 0.00 11.22 0.00 5.73 8.94 0.00 0.00 0.00 24 I2_AR2 ActiveIntronRegion 0 10.88 21.21 9.63 5.35 0.00 0.00 0.00 1.73 3.71 5.73 1.93 3.71 0.00 0.00 7.87 5.94 4.72 0.00 9.56 3.80 0.00 0.00 0.00 25 I2_AR3 ActiveIntronRegion 0 14.52 9.26 9.34 4.09 0.00 0.00 0.00 0.95 4.47 4.59 1.60 4.18 0.00 0.00 8.40 6.05 3.07 0.00 6.92 3.52 0.00 1.87 0.00 26 ER3a ExonRegion 0 57.41 61.97 57.64 29.90 31.46 68.69 19.56 39.91 41.69 64.44 260.51 113.21 120.69 187.03 106.36 130.06 252.59 70.53 77.34 80.81 49.77 53.65 40.00 27 E3_Da KnownBoundary 0 6.89 14.47 10.94 5.03 3.82 0.00 0.00 8.50 10.19 10.74 2.21 6.30 19.48 0.00 13.35 4.19 0.00 4.64 22.21 9.01 2.35 0.00 0.00 28 E3a_E4a KnownJunction 0 81.57 73.67 68.03 32.50 38.46 91.94 13.60 23.04 32.52 72.18 306.66 191.46 88.79 219.67 156.38 130.56 266.85 76.03 117.27 69.93 56.46 59.64 33.80 29 ER3b ExonRegion 0 7.74 11.45 12.49 10.05 4.16 2.17 4.41 2.96 4.62 9.90 4.32 3.15 12.62 2.57 8.40 7.26 10.55 4.56 8.37 8.57 0.43 1.71 3.94 30 E3_Db NovelBoundary 0 3.63 5.99 19.63 12.42 0.00 7.78 12.50 14.66 2.49 2.28 7.79 0.00 0.00 0.00 6.30 0.00 0.00 0.00 0.00 2.88 2.90 0.00 0.00 31 E4_Aa NovelBoundary 0 7.26 3.22 8.93 6.63 7.56 2.10 0.00 0.00 9.20 3.55 6.79 0.00 13.64 4.89 9.89 0.00 8.60 2.11 8.38 21.03 0.00 5.14 3.41 32 ER4a ExonRegion 0 52.69 46.83 89.39 35.44 31.79 64.23 22.14 43.53 42.69 60.36 252.36 180.16 136.20 216.31 136.51 164.22 252.76 80.49 81.67 81.56 43.40 65.62 44.87 33 E4_Da NovelBoundary 0 3.78 11.51 18.54 4.89 0.00 0.00 2.25 10.97 15.13 2.79 5.05 0.00 0.00 5.24 4.45 7.52 9.26 2.28 0.00 9.59 3.15 2.39 4.35 34 E4a_E5a KnownJunction 0 82.98 39.01 108.10 38.56 26.23 54.40 21.11 51.84 32.09 54.88 243.43 186.21 232.78 240.27 166.76 183.88 226.18 82.74 153.98 96.13 55.60 69.99 41.15 35 E4a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 I4_AR1 ActiveIntronRegion 0 11.32 0.51 2.75 4.11 2.77 1.38 2.32 3.22 4.28 4.81 4.35 3.57 9.52 0.62 2.40 5.94 9.01 1.15 4.12 4.88 1.10 3.86 0.73 37 E5_Aa NovelBoundary 0 7.04 12.83 3.31 8.42 12.48 0.00 2.12 1.64 1.56 5.78 5.37 0.00 0.00 2.41 4.45 12.48 8.32 4.60 14.40 0.00 8.59 2.57 0.00 38 ER5a ExonRegion 0 36.71 67.66 108.55 42.99 28.38 82.14 19.61 47.94 36.77 67.58 258.53 153.06 105.99 211.14 139.07 177.66 284.67 94.13 114.85 75.90 51.14 59.11 52.20 39 E5a_E9c KnownJunction 0 46.30 87.94 112.12 33.70 36.33 85.86 17.62 50.64 39.53 70.00 229.48 173.46 96.26 202.07 175.66 211.74 259.93 92.90 147.96 106.17 45.96 52.84 58.30 40 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 E6_Da NovelBoundary 0 7.11 5.92 4.70 0.00 0.00 0.00 2.08 4.64 1.77 1.56 2.05 0.00 0.00 0.00 14.59 3.85 0.00 4.60 24.57 0.00 0.00 2.76 4.35 42 E6a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER7a ExonRegion 0 1.84 0.59 0.57 1.77 0.78 1.59 0.00 0.75 0.53 0.00 2.24 3.10 2.24 3.18 1.43 6.89 7.65 0.75 2.77 2.47 0.00 1.81 4.25 44 E7a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 ER8a ExonRegion 0 0.00 0.00 0.00 0.00 0.55 1.13 0.00 0.00 0.00 0.00 0.00 6.57 2.37 3.87 3.04 1.83 10.14 0.00 0.00 2.61 1.35 1.28 3.61 46 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 4.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 ER9a ExonRegion 0 0.00 0.00 2.45 0.00 2.68 0.00 0.00 0.00 0.62 0.00 1.93 0.00 0.00 1.62 1.45 0.00 3.30 1.85 0.00 1.06 0.00 0.00 0.00 48 ER9b ExonRegion 0 1.30 3.21 6.50 1.15 5.76 3.31 0.76 2.26 1.47 3.04 12.64 13.49 3.25 9.49 8.48 12.80 13.33 3.91 4.78 4.99 4.24 2.40 2.15 49 ER9c ExonRegion 0 60.53 68.98 108.19 38.56 42.13 92.47 24.49 56.03 34.52 64.46 280.36 144.08 107.83 209.68 166.56 209.43 272.97 80.15 102.70 79.42 45.31 56.97 56.74 50 E9a_E10a KnownJunction 0 142.62 95.84 93.64 35.79 64.09 126.46 18.50 68.76 28.93 60.49 218.48 147.50 118.82 239.98 219.17 246.00 313.79 78.60 117.37 71.97 44.42 53.46 40.55 51 ER10a ExonRegion 0 71.33 70.31 83.15 24.82 24.92 66.89 19.17 65.23 31.20 61.01 229.35 78.76 57.00 185.54 176.50 178.06 253.01 79.16 80.85 71.35 44.27 46.74 43.11 52 E10a_E11a KnownJunction 0 71.79 118.33 77.76 29.87 27.76 95.51 23.89 71.30 23.76 59.39 262.86 81.03 48.37 205.43 181.59 155.26 251.15 70.22 65.32 40.27 64.74 35.39 56.60 53 ER11a ExonRegion 0 61.68 83.73 89.46 49.12 45.20 79.47 26.95 67.94 34.75 72.41 210.20 50.45 72.42 187.02 209.78 215.19 252.49 104.68 104.54 83.61 59.52 60.86 53.45 54 E11a_E12a KnownJunction 0 68.38 78.54 129.50 39.16 54.58 83.70 41.91 82.11 46.44 85.21 275.75 53.72 104.86 225.97 268.62 173.89 321.65 101.93 49.60 105.66 83.71 41.88 22.54 55 I11_AR2 ActiveIntronRegion 0 4.04 5.74 4.45 2.42 1.44 4.52 2.48 3.26 4.80 2.98 3.83 2.54 5.12 2.53 4.42 10.12 7.63 15.11 9.32 8.07 2.04 3.52 5.65 56 I11_AR10 ActiveIntronRegion 0 27.17 11.14 5.83 5.62 5.70 5.07 4.71 10.00 8.35 7.11 7.61 7.90 18.06 8.21 9.87 17.35 20.42 25.58 11.48 13.68 6.48 5.07 9.25 57 I11_SR5 SilentIntronRegion 0 34.83 17.58 4.65 4.65 8.80 6.43 4.73 6.11 3.16 5.61 5.40 7.42 10.92 5.49 8.28 11.39 8.18 9.26 3.08 9.51 2.26 3.92 3.59 58 I11_AR11 ActiveIntronRegion 0 40.53 7.72 1.77 1.00 3.46 4.05 2.02 2.14 1.34 2.36 2.44 3.69 1.52 2.39 2.13 0.00 8.93 0.00 0.00 3.07 0.00 1.96 0.00 59 E12_Aa NovelBoundary 0 29.04 19.93 7.51 0.00 3.48 0.00 4.50 6.12 0.00 4.14 2.68 18.16 14.61 2.12 23.49 8.54 4.30 2.07 4.80 0.00 0.00 0.00 0.00 60 ER12a ExonRegion 1 114.59 98.23 117.69 39.91 68.31 85.85 28.80 67.20 32.77 78.43 297.71 55.49 69.58 226.75 208.77 195.68 311.97 71.16 108.50 98.22 74.48 62.42 40.27 61 E12_Da KnownBoundary 0 182.92 153.26 129.24 50.38 68.68 77.40 25.70 69.21 26.50 82.12 242.64 63.02 59.41 276.00 246.12 197.90 295.18 49.21 137.51 120.55 71.54 60.44 46.86 62 ER12b ExonRegion 0 161.96 147.60 105.27 55.66 50.19 82.80 24.09 82.25 37.38 74.77 232.76 63.16 104.01 173.22 154.77 200.53 288.70 67.30 130.79 98.86 66.04 64.26 63.27 63 E12_Db KnownBoundary 0 236.86 158.00 91.54 53.61 77.33 110.73 34.14 59.72 30.64 68.20 215.90 105.63 130.67 104.89 109.52 150.39 242.36 64.21 75.86 102.01 48.06 65.95 24.41 64 ER12c ExonRegion 0 139.13 131.97 90.00 53.08 56.56 76.49 51.69 76.87 36.42 76.82 181.52 102.27 75.17 146.01 147.69 175.50 208.36 74.15 97.70 103.06 44.47 64.70 46.71 65 E12_Dc KnownBoundary 0 123.43 100.31 95.80 61.63 54.41 156.44 43.99 61.65 35.79 75.83 158.41 92.43 45.45 66.63 96.55 202.77 156.80 106.62 82.54 84.18 31.69 50.46 39.95 66 ER12d ExonRegion 0 54.81 56.84 25.03 16.08 9.17 23.74 13.15 18.84 13.06 23.05 42.53 30.33 18.37 39.47 50.24 36.09 38.85 22.92 20.41 28.55 5.81 23.85 11.45