Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DDX58 Gene 0 99.91 11.34 10.85 19.62 61.66 18.66 26.25 58.25 32.41 17.76 75.24 87.62 105.59 121.17 62.83 138.67 75.85 6.33 7.89 6.80 24.43 36.08 27.08 2 379883 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 379882 Transcript 0 38.41 5.49 3.85 9.06 19.23 4.15 10.71 14.35 7.02 1.90 6.53 13.84 10.32 17.15 20.14 22.70 13.13 3.01 3.75 4.94 6.33 8.31 5.95 4 379868 Transcript 0 7.11 0.00 0.00 1.60 0.00 0.00 0.00 0.00 2.89 0.00 0.00 6.15 0.00 2.47 0.00 0.00 7.85 0.00 0.00 0.00 0.00 6.25 0.00 5 ER1a ExonRegion 1 13.71 2.31 0.00 1.77 4.25 1.38 2.33 3.50 5.27 0.74 9.96 0.96 5.09 46.42 17.46 88.48 21.47 5.51 0.00 2.82 4.50 1.87 2.96 6 E1_Ab KnownBoundary 0 22.52 2.76 0.00 1.50 14.35 2.78 12.45 1.85 5.12 0.00 20.43 12.45 0.00 12.30 15.70 23.16 31.42 8.46 0.00 5.62 20.39 8.27 12.12 7 ER1b ExonRegion 1 39.59 3.10 0.00 2.41 15.13 6.54 10.07 12.17 11.71 1.79 50.26 3.89 7.98 81.60 23.45 138.50 46.95 2.97 0.00 4.40 20.30 13.11 23.17 8 E1a_E2a KnownJunction 0 10.59 0.00 0.00 1.76 7.56 0.00 0.00 15.03 9.23 0.00 55.07 6.30 6.33 73.64 18.05 89.04 38.34 0.00 0.00 0.00 43.49 8.21 0.00 9 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER2a ExonRegion 1 15.85 3.62 0.69 5.09 32.96 4.44 11.66 21.96 17.30 5.89 65.25 14.11 32.66 104.88 25.92 124.94 78.39 4.05 2.41 4.51 45.14 23.98 26.52 11 E2a_E3a KnownJunction 0 25.04 11.84 0.00 8.46 27.33 5.11 16.25 23.62 13.02 8.60 55.07 12.15 35.06 90.82 19.66 111.34 90.14 7.01 0.00 5.88 32.74 27.92 20.91 12 ER3a ExonRegion 1 31.38 8.72 4.23 10.97 29.98 10.38 23.98 41.90 27.98 13.33 84.63 61.90 102.79 142.22 31.48 128.34 72.80 3.93 2.68 4.33 15.28 36.18 18.93 13 E3_Da NovelBoundary 0 89.35 3.35 0.00 3.46 21.05 2.90 35.02 8.67 4.63 0.00 4.47 18.91 13.64 16.89 8.90 8.72 0.00 0.00 0.00 0.00 0.00 3.12 4.35 14 E3a_E4a KnownJunction 0 40.45 0.00 1.42 10.52 45.33 12.38 7.77 33.80 25.78 16.47 82.86 63.02 82.95 99.42 28.18 116.29 65.83 0.00 0.00 2.43 8.22 36.74 18.27 15 E3a_E5a KnownJunction 0 7.11 0.00 0.00 1.60 0.00 0.00 0.00 0.00 2.89 0.00 0.00 6.15 0.00 2.47 0.00 0.00 7.85 0.00 0.00 0.00 0.00 6.25 0.00 16 E4_Aa NovelBoundary 0 20.45 0.00 0.00 4.96 12.56 0.00 14.57 11.42 11.55 5.21 16.90 42.46 6.49 10.42 6.30 8.37 4.49 2.03 4.14 6.52 0.00 3.00 12.38 17 ER4a ExonRegion 0 43.66 7.54 9.87 13.17 35.11 12.01 15.21 37.49 22.30 15.71 112.04 110.81 161.14 138.29 36.17 158.73 96.19 8.91 3.74 8.04 25.94 39.46 27.96 18 E4_Da NovelBoundary 0 18.23 3.35 0.00 3.56 8.66 4.32 6.05 4.60 10.21 0.00 6.58 6.15 12.66 2.12 0.00 12.48 14.31 2.11 18.45 5.75 14.02 9.00 7.68 19 E4a_E5a KnownJunction 1 39.27 4.87 13.78 4.99 12.73 13.23 11.84 31.87 20.14 19.42 140.67 83.43 153.89 159.63 19.78 126.12 115.29 6.59 7.34 6.01 20.51 26.09 27.23 20 E5_Aa NovelBoundary 1 33.41 0.00 0.00 7.69 12.48 0.00 5.30 3.86 9.61 2.82 2.68 17.86 55.52 4.94 0.00 6.84 0.00 0.00 0.00 3.07 0.00 9.37 8.71 21 ER5a ExonRegion 0 47.89 14.10 13.09 13.31 46.13 12.16 17.23 47.26 34.50 14.84 114.64 150.59 174.12 129.04 44.41 129.73 113.72 8.56 8.92 4.63 20.09 53.32 16.37 22 E5a_E6a KnownJunction 1 99.28 21.90 15.08 19.38 82.60 10.90 36.61 49.04 59.37 22.13 98.50 228.22 267.84 120.02 63.42 159.19 121.36 12.06 0.00 0.00 10.19 77.58 19.46 23 ER6a ExonRegion 0 62.55 6.65 7.47 10.47 40.61 15.35 21.66 52.75 51.65 16.97 115.83 186.41 182.69 141.36 59.53 153.89 114.06 6.12 6.78 4.59 17.18 59.88 20.58 24 E6a_E7a KnownJunction 0 28.67 0.00 1.83 21.11 33.45 15.45 33.87 67.11 57.99 29.95 127.19 203.47 179.21 186.36 68.98 173.80 123.61 3.73 4.80 5.56 20.39 67.54 19.89 25 ER7a ExonRegion 0 69.02 9.16 3.25 11.79 75.82 18.58 29.04 62.92 41.71 19.15 134.73 164.15 185.47 134.19 51.86 166.81 98.11 1.75 4.39 7.82 22.60 57.96 26.22 26 E7a_E8a KnownJunction 0 75.64 6.05 9.88 22.51 45.25 9.09 10.69 94.84 40.80 25.55 139.04 194.16 223.85 196.54 50.68 182.43 107.71 0.00 14.40 15.15 25.14 86.28 18.61 27 ER8a ExonRegion 0 64.05 8.26 5.96 16.84 71.45 24.65 24.78 67.04 44.95 27.96 129.41 211.43 231.06 203.07 66.81 230.55 126.89 4.00 8.99 10.35 38.73 49.94 44.33 28 E8a_E9a KnownJunction 1 85.87 2.83 4.64 20.64 23.77 15.62 10.51 76.23 54.95 28.10 124.72 233.18 321.73 327.68 70.83 238.74 144.37 10.36 0.00 6.01 75.68 27.43 53.10 29 ER9a ExonRegion 0 68.94 4.38 4.39 12.48 46.29 17.56 22.47 54.27 42.16 19.31 119.71 135.41 181.36 225.79 67.42 217.18 135.78 8.20 10.59 3.39 56.08 40.16 49.60 30 E9a_E10a KnownJunction 0 139.21 9.41 11.24 11.69 73.60 18.91 38.95 74.75 32.58 23.02 120.61 136.84 256.96 328.98 116.94 293.94 121.93 16.42 4.80 3.26 49.42 33.74 55.40 31 ER10a ExonRegion 0 109.29 7.28 6.98 17.42 83.87 28.10 20.41 59.01 31.76 18.20 118.00 140.52 205.69 210.61 84.72 222.48 128.33 7.85 3.46 1.03 40.72 37.36 35.21 32 E10_Da NovelBoundary 0 3.11 0.00 0.00 5.66 3.14 0.00 8.08 20.91 10.73 2.69 10.27 5.85 20.29 9.95 4.45 16.32 8.04 6.76 3.86 3.26 2.35 8.08 0.00 33 E10a_E11a KnownJunction 0 107.72 5.85 5.14 13.62 67.40 11.41 20.84 65.06 24.48 13.22 156.72 168.81 192.20 195.42 83.19 215.07 91.91 3.32 3.86 3.26 42.01 42.74 19.55 34 I10_SR1 SilentIntronRegion 0 7.58 1.64 1.26 3.64 4.73 2.59 2.86 10.53 10.02 2.54 12.03 5.21 5.31 8.78 4.53 21.13 11.00 2.64 1.79 2.91 8.07 3.34 4.05 35 ER11a ExonRegion 0 114.71 8.65 6.11 14.71 62.30 21.32 32.96 77.17 35.40 20.58 131.03 125.12 177.98 179.99 82.92 216.29 112.44 6.56 6.13 5.75 39.72 41.83 49.27 36 E11a_E12a KnownJunction 0 128.84 32.23 8.46 15.15 75.30 19.08 44.38 75.08 25.26 14.18 115.87 177.66 237.97 198.84 114.22 256.51 93.41 4.31 3.58 12.34 37.56 29.88 56.43 37 ER12a ExonRegion 0 100.10 8.54 8.51 21.62 99.02 22.90 36.86 80.88 42.69 18.45 135.76 166.91 250.47 222.43 101.46 256.32 111.16 6.32 8.03 9.82 50.28 58.72 54.87 38 E12a_E13a KnownJunction 0 116.39 15.39 14.52 11.55 108.40 5.34 31.05 69.46 35.79 18.91 115.29 119.74 135.38 198.95 100.62 205.59 75.55 6.88 24.94 12.40 50.84 49.29 69.57 39 E13_Aa NovelBoundary 1 30.52 7.70 0.00 5.26 29.80 0.00 13.29 0.00 3.30 1.67 28.74 11.70 31.33 16.07 13.72 51.18 3.65 1.62 7.34 0.00 9.64 19.59 20.91 40 ER13a ExonRegion 0 137.06 11.12 15.15 17.27 83.77 29.02 35.97 77.58 37.52 16.83 139.03 169.78 207.27 219.47 99.21 233.60 124.30 8.15 5.86 6.00 39.80 50.68 43.73 41 E13a_E14a KnownJunction 0 232.78 14.87 13.81 12.72 110.44 56.39 24.69 64.98 36.86 14.37 109.50 92.43 190.90 206.13 62.43 220.03 102.48 14.80 12.89 5.94 46.21 30.80 18.69 42 ER14a ExonRegion 0 191.09 18.79 20.43 12.46 111.12 47.26 45.67 56.36 43.76 19.23 132.33 130.17 180.85 217.63 108.62 222.58 130.48 13.16 11.80 3.72 39.72 33.22 42.76 43 E14a_E15a KnownJunction 0 173.44 17.83 17.06 15.65 82.94 4.71 39.66 63.17 38.02 10.96 103.18 85.38 125.80 216.85 139.69 254.80 96.96 12.52 8.38 3.26 45.28 38.45 50.02 44 ER15a ExonRegion 0 140.67 6.61 13.97 13.83 86.09 15.25 32.77 59.74 40.93 16.01 121.02 96.06 129.02 186.59 98.15 188.86 98.97 12.39 6.45 5.54 43.51 28.93 27.07 45 E15_Da NovelBoundary 0 7.56 0.00 4.79 2.06 16.55 0.00 2.25 4.39 9.66 2.53 7.53 0.00 13.64 2.47 0.00 12.30 8.98 2.49 0.00 0.00 8.96 6.06 4.10 46 E15a_E16a KnownJunction 0 229.60 6.25 17.59 16.38 61.29 21.69 25.66 57.63 50.81 21.27 91.76 161.75 95.12 155.34 137.59 200.72 98.55 6.47 4.42 5.94 25.33 25.04 47.21 47 ER16a ExonRegion 0 149.63 14.42 21.16 21.40 117.29 33.42 33.68 62.51 56.89 18.82 106.49 97.78 117.28 158.74 118.42 197.47 84.26 6.52 7.42 10.58 20.05 47.72 31.45 48 E16a_E17a KnownJunction 0 120.84 23.68 15.40 26.74 127.50 15.22 28.93 69.29 44.01 14.88 103.87 75.17 47.40 115.02 90.24 171.84 85.55 7.67 9.22 0.00 23.85 33.80 23.13 49 I16_AR2 ActiveIntronRegion 0 4.95 1.31 2.06 2.09 3.36 0.94 3.42 5.63 2.60 1.98 1.29 2.22 2.98 2.06 1.87 9.21 6.09 1.55 0.82 3.79 3.59 2.30 17.38 50 ER17a ExonRegion 0 149.55 10.56 14.13 26.35 75.91 27.47 37.25 83.18 44.20 19.32 102.71 117.17 98.69 164.92 126.77 216.94 119.66 5.93 5.33 11.66 27.24 51.87 27.27 51 E17a_E18a KnownJunction 0 143.66 8.42 9.22 24.84 52.80 13.00 15.15 70.81 33.54 22.59 76.07 56.27 79.22 166.23 106.43 149.70 84.71 10.28 0.00 7.73 30.70 36.07 23.30 52 I17 Intron 0 15.64 6.37 4.37 2.21 6.87 2.79 4.95 5.49 4.80 5.05 2.19 5.78 4.96 4.34 2.99 6.98 5.31 1.40 1.52 2.96 4.69 7.70 8.43 53 I17_AR2 ActiveIntronRegion 0 10.94 7.48 4.24 2.00 5.60 2.84 3.73 5.77 5.47 4.27 1.21 7.41 4.09 3.35 4.66 5.28 5.06 1.37 2.84 2.75 4.60 7.36 4.69 54 I17_SR2 SilentIntronRegion 0 21.92 7.22 5.28 2.68 8.55 3.18 5.81 6.68 5.30 6.44 3.41 5.60 6.28 5.93 2.09 7.93 6.24 1.76 1.17 3.49 5.54 9.24 12.74 55 E18_Aa NovelBoundary 0 74.16 12.56 5.56 11.69 0.00 0.00 6.76 15.03 8.42 8.76 2.26 0.00 6.82 4.94 4.45 3.25 9.35 5.80 0.00 2.36 2.53 3.12 15.54 56 ER18a ExonRegion 0 129.61 15.99 15.41 28.98 66.56 20.47 28.79 71.24 31.75 23.21 39.21 53.96 59.11 76.21 58.92 89.14 48.38 6.19 11.22 6.70 15.52 33.29 22.53 57 E18_Da KnownBoundary 0 118.24 10.00 12.00 27.64 47.88 15.10 34.62 43.91 17.77 6.34 4.90 6.30 19.32 29.61 38.32 47.25 35.53 1.95 4.61 5.56 8.22 18.92 0.00 58 ER18b ExonRegion 0 76.82 10.99 7.70 18.12 38.47 8.31 21.41 28.71 14.04 3.81 13.06 27.67 20.65 34.29 40.27 45.39 26.25 6.01 7.50 9.87 12.66 16.62 11.89 59 IG32 Intergenic 0 19.21 4.70 3.39 3.85 13.72 1.84 9.41 6.07 5.50 3.40 2.15 5.72 6.37 5.63 4.00 7.78 8.00 2.83 0.83 4.22 4.81 8.00 12.36 60 IG32_AR5 ActiveIntergenicRegion 0 23.36 3.95 4.59 3.78 15.93 2.29 11.48 6.90 6.42 4.84 2.19 7.49 7.43 7.03 5.11 11.25 9.19 4.80 1.58 5.51 5.69 8.52 14.98 61 IG32_SR2 SilentIntergenicRegion 0 18.20 5.56 2.22 4.74 12.10 1.11 7.01 5.25 4.44 2.21 1.02 2.26 1.95 2.15 1.76 2.69 3.76 1.26 0.24 2.40 4.65 7.54 11.55 62 IG32_AR1 ActiveIntergenicRegion 0 13.74 7.73 2.60 4.19 13.99 2.32 10.69 6.53 6.41 2.17 4.59 9.01 12.13 8.84 2.92 8.47 15.68 1.02 0.00 3.03 4.89 9.91 10.70