Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 JAK2 Gene 0 56.52 27.78 18.44 25.18 45.74 48.49 21.55 44.62 50.60 23.26 100.81 86.73 86.99 65.51 33.67 56.98 53.35 15.90 8.69 24.44 26.56 65.36 30.17 2 476574 Transcript 0 0.40 0.01 0.35 0.00 0.00 3.65 0.24 0.47 0.67 0.31 3.10 0.02 0.03 3.14 1.64 3.24 1.79 3.30 0.58 3.82 5.98 3.01 1.59 3 381652 Transcript 0 62.58 32.32 16.47 24.80 46.45 57.01 23.51 46.52 57.62 25.68 134.88 115.33 104.39 83.38 36.88 73.63 70.71 18.39 12.45 29.77 33.35 71.98 38.01 4 472549 Transcript 0 0.00 0.00 0.00 0.00 4.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 5 487310 Transcript 0 13.75 4.77 5.90 6.43 6.32 2.15 3.47 9.40 4.90 4.36 4.34 11.58 9.04 1.52 2.34 3.64 1.21 0.97 0.09 3.91 2.68 10.51 0.14 6 ER1a ExonRegion 0 0.80 0.03 0.70 0.00 0.00 7.30 0.48 0.93 1.33 0.62 6.21 0.03 0.07 3.80 3.27 6.47 3.58 6.59 1.15 7.64 11.96 6.01 3.19 7 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 E2_Aa NovelBoundary 0 0.00 3.35 1.83 1.40 0.00 0.00 0.00 0.00 3.07 0.00 13.58 0.00 0.00 2.12 5.19 0.00 4.77 10.16 13.55 3.26 19.95 5.76 3.93 9 ER2a ExonRegion 1 1.75 2.17 2.40 1.07 0.37 3.76 1.53 6.32 4.77 3.74 31.81 1.82 2.94 34.44 6.50 22.81 21.82 10.43 0.84 9.65 25.30 13.65 11.63 10 E2a_E3a KnownJunction 0 10.08 0.00 3.67 0.00 0.00 9.88 1.90 6.90 8.25 2.85 43.85 0.00 21.43 39.20 4.70 34.78 29.36 10.36 0.00 12.34 54.30 8.08 37.65 11 ER3a ExonRegion 1 7.50 11.86 4.49 4.65 9.22 16.53 6.35 20.91 20.65 6.67 63.32 31.51 37.63 69.97 14.51 51.92 45.54 17.99 4.14 22.58 55.78 29.24 34.00 12 E3a_E4a KnownJunction 0 0.00 9.41 0.00 7.72 3.74 24.99 10.82 24.73 31.31 8.86 59.07 37.06 25.97 69.34 14.09 28.97 48.15 7.96 0.00 23.27 44.17 46.05 29.54 13 ER4a ExonRegion 1 10.48 15.76 7.76 6.22 7.61 21.70 8.38 29.12 43.15 11.95 109.44 45.82 70.85 82.20 17.52 59.64 59.74 17.22 7.24 33.42 47.07 63.68 30.73 14 E4_Da KnownBoundary 1 16.82 3.09 9.99 6.96 28.10 18.23 6.36 38.32 43.66 21.73 131.09 52.67 106.65 62.75 10.75 72.12 70.69 25.41 20.42 45.25 31.26 74.40 39.52 15 ER4b ExonRegion 0 16.86 9.47 6.95 7.13 16.99 32.75 11.89 34.27 55.94 14.48 157.94 97.97 98.08 89.21 30.17 85.63 76.90 25.06 9.64 35.91 20.22 89.56 37.64 16 E4b_E5a KnownJunction 0 23.71 39.14 8.49 1.33 41.09 74.11 11.48 30.39 60.76 13.08 148.83 126.04 116.88 88.00 20.64 80.06 52.17 15.96 12.24 36.56 19.83 74.40 18.95 17 ER5a ExonRegion 0 13.47 26.06 5.93 5.81 37.48 38.13 17.05 30.93 56.15 17.72 153.82 144.13 118.61 103.37 30.18 80.70 80.55 26.18 9.61 30.49 40.77 81.34 45.61 18 E5a_E6a KnownJunction 1 17.41 25.13 5.41 5.63 19.52 36.40 20.58 29.49 66.96 14.00 139.61 99.03 187.16 111.54 29.79 182.43 68.44 55.88 13.55 38.03 37.31 73.91 97.06 19 E6_Ab NovelBoundary 1 27.12 12.83 12.83 13.78 14.69 35.83 11.88 26.33 49.97 13.97 90.29 129.64 93.34 87.17 37.70 211.31 68.07 52.19 21.18 52.73 47.69 114.02 85.19 20 ER6a ExonRegion 1 18.07 17.14 9.15 8.62 11.75 30.85 10.69 21.61 51.30 14.30 115.08 105.92 143.72 97.45 26.42 185.23 67.55 39.59 15.70 41.57 41.87 85.65 83.17 21 ER6b ExonRegion 0 10.32 12.95 5.94 8.06 23.25 42.28 10.74 15.38 41.73 21.78 138.14 102.70 113.39 106.47 32.14 101.88 100.02 32.40 18.58 30.52 88.96 95.26 41.77 22 E6a_E7a KnownJunction 1 5.78 14.34 1.15 3.50 23.26 41.74 6.32 12.20 41.96 13.16 112.19 102.78 76.94 95.83 13.97 45.12 70.59 17.74 3.76 9.33 62.21 33.19 35.08 23 ER7a ExonRegion 0 19.40 19.07 5.52 12.66 29.95 48.32 13.99 27.89 49.81 18.60 157.90 79.12 136.49 116.83 36.29 149.52 97.83 49.08 25.57 41.36 67.38 87.62 73.64 24 E7a_E8a KnownJunction 0 29.34 22.63 5.59 11.99 56.96 46.62 35.46 25.22 41.12 20.58 118.14 116.89 163.14 104.13 30.29 69.30 81.63 18.90 3.67 39.95 33.67 28.29 27.32 25 ER8a ExonRegion 0 23.99 14.56 4.25 12.94 40.64 54.60 22.52 23.14 43.54 21.76 141.02 111.47 126.01 92.75 22.71 69.79 73.37 22.44 8.24 37.84 33.73 51.17 32.34 26 E8_Da KnownBoundary 0 43.79 19.14 6.42 14.35 77.42 25.50 25.04 29.04 43.89 19.21 126.93 116.14 94.47 67.51 36.34 77.07 77.14 19.77 12.80 41.67 22.55 75.01 51.22 27 E8a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 4.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 28 ER8b ExonRegion 0 22.78 16.23 7.79 9.85 35.52 42.72 14.63 35.45 44.30 22.43 144.95 108.10 133.76 78.41 33.99 70.48 82.46 19.01 15.57 36.91 36.61 72.73 38.12 29 E8_Ab KnownBoundary 0 17.56 33.02 11.29 7.29 27.16 33.16 14.71 32.53 45.98 15.88 142.88 139.85 118.01 87.35 33.25 49.65 54.14 15.88 0.00 32.73 26.13 61.05 15.88 30 ER8c ExonRegion 1 8.98 17.47 5.88 6.76 21.11 32.74 12.43 23.33 34.79 16.76 126.82 107.68 110.65 73.00 15.96 57.57 63.88 22.86 3.60 20.65 29.14 39.70 15.01 31 E8_Db KnownBoundary 0 7.56 3.35 1.69 7.66 26.23 16.35 14.75 20.04 29.05 19.39 103.71 115.54 92.20 55.39 13.35 45.03 52.27 12.68 3.86 18.98 18.90 30.37 14.51 32 E8b_E9a NovelJunction 1 3.78 3.29 0.00 5.19 0.00 2.67 0.00 10.39 17.59 7.76 17.90 18.91 74.67 9.24 0.00 7.86 22.63 4.68 0.00 5.69 3.15 22.35 11.78 33 ER8d ExonRegion 0 9.42 12.07 4.06 7.49 18.11 26.83 12.91 17.79 25.59 18.74 104.58 134.44 115.33 59.25 33.38 34.82 43.82 11.13 4.19 23.00 25.35 50.36 29.64 34 E8c_E9a KnownJunction 0 20.37 21.38 5.77 9.72 4.33 64.57 14.79 14.87 29.05 21.03 131.45 113.14 153.56 49.27 42.90 48.45 68.82 9.04 4.61 27.04 31.75 77.46 17.76 35 ER9a ExonRegion 0 24.09 13.30 7.93 12.20 24.77 43.51 12.64 24.31 46.02 21.69 130.94 160.01 114.40 80.29 23.69 59.81 54.60 12.89 4.14 32.85 25.64 66.12 23.88 36 E9a_E10a KnownJunction 1 20.30 12.43 11.86 19.68 35.14 36.74 13.65 22.26 43.00 23.26 135.98 278.49 120.28 70.75 15.08 57.16 91.44 14.09 12.99 25.89 42.81 61.05 24.33 37 ER10a ExonRegion 0 45.46 23.03 10.16 22.16 29.91 29.58 23.56 29.10 44.48 26.02 134.23 182.71 154.98 81.82 24.81 69.43 71.66 17.96 5.99 37.69 34.56 75.39 35.54 38 E10a_E11a KnownJunction 0 17.26 18.15 14.55 21.38 15.37 41.28 7.42 20.70 44.24 14.91 118.35 168.65 75.16 79.58 28.43 78.61 85.83 12.31 8.38 37.90 36.33 60.01 32.61 39 I10_AR1 ActiveIntronRegion 0 3.92 4.98 0.46 2.18 9.85 5.86 7.02 5.86 5.56 1.66 3.12 4.75 20.06 1.72 0.38 1.94 1.09 1.08 0.00 1.68 1.40 6.88 2.45 40 I10_AR2 ActiveIntronRegion 0 8.08 3.51 1.23 1.36 12.41 13.34 9.27 9.74 6.29 2.09 6.85 12.99 29.42 10.34 5.01 17.29 2.40 3.70 0.00 1.74 0.00 10.23 5.34 41 I10_AR3 ActiveIntronRegion 1 5.06 0.90 1.23 2.73 11.74 7.34 3.97 13.73 10.43 4.72 5.05 12.75 5.21 9.02 9.51 17.83 0.00 0.92 3.19 7.68 0.00 10.30 4.24 42 ER11a ExonRegion 0 21.66 14.11 8.41 16.22 36.39 41.92 14.22 22.76 48.43 22.94 139.32 173.18 120.73 74.74 27.30 98.56 87.18 17.65 5.06 36.23 28.57 90.63 47.01 43 E11_Da NovelBoundary 0 0.00 2.76 0.00 1.96 0.00 7.21 10.51 11.21 27.40 3.79 2.42 6.30 5.84 7.77 0.00 3.93 0.00 0.00 8.09 6.46 3.15 3.12 0.00 44 E11a_E12a KnownJunction 0 19.48 12.50 4.88 16.48 52.12 63.66 15.59 17.74 48.61 20.90 112.45 63.77 138.79 64.81 14.59 118.00 110.80 11.69 0.00 16.87 20.08 99.99 37.73 45 I11 Intron 0 8.16 6.97 2.35 4.75 4.69 8.35 8.50 5.62 8.17 2.59 6.02 14.96 18.75 3.76 3.69 3.70 2.31 1.29 1.98 4.14 1.97 12.57 3.09 46 I11_AR1 ActiveIntronRegion 0 6.39 6.80 2.46 4.60 4.19 6.83 7.65 5.00 7.15 1.75 3.65 14.73 20.68 3.17 4.08 3.85 1.43 0.74 1.38 3.67 2.02 10.68 2.38 47 I11_SR1 SilentIntronRegion 0 12.79 7.42 2.05 5.14 6.01 12.37 10.79 7.24 10.86 4.80 12.22 15.64 13.84 5.34 2.71 3.34 4.64 2.72 3.58 5.38 1.86 17.56 4.95 48 E12_Aa NovelBoundary 0 17.04 3.35 3.52 6.66 12.05 16.58 0.00 12.53 19.27 8.49 9.74 12.60 26.78 2.47 0.00 4.02 12.90 4.35 4.71 23.65 9.02 22.96 11.61 49 ER12a ExonRegion 0 32.87 16.67 10.54 20.55 35.90 69.00 24.77 37.96 58.41 29.01 145.07 101.04 123.25 78.82 24.17 77.40 111.07 17.43 7.67 26.26 26.20 85.15 44.87 50 E12a_E13a KnownJunction 0 27.04 14.01 4.41 20.81 44.40 58.26 17.97 48.18 72.80 25.22 143.25 133.39 201.45 70.58 27.44 54.60 72.46 10.20 20.71 25.44 20.20 58.17 43.79 51 ER13a ExonRegion 0 27.38 13.39 15.31 24.39 40.09 58.05 32.35 48.61 61.84 29.67 166.06 131.37 171.77 82.44 32.32 81.83 103.31 23.04 9.41 30.72 37.26 74.81 41.94 52 E13a_E14a KnownJunction 0 31.04 23.22 20.28 20.64 73.51 89.95 24.02 75.95 65.68 32.77 149.14 123.04 215.25 100.65 37.70 63.23 94.06 10.49 9.41 50.81 32.80 72.56 24.93 53 ER14a ExonRegion 0 33.83 15.11 19.85 19.79 49.73 77.17 34.41 49.79 61.71 24.11 156.79 158.43 142.16 81.62 26.54 58.17 88.54 18.92 8.52 31.38 31.95 79.59 35.85 54 E14a_E15a KnownJunction 0 42.23 6.05 31.46 27.40 36.84 81.09 49.59 65.92 64.50 25.71 156.57 167.00 88.96 72.46 41.54 76.39 63.67 15.59 13.55 45.96 27.00 70.30 28.08 55 ER15a ExonRegion 0 31.87 14.74 18.98 30.85 37.83 62.08 30.00 52.13 52.27 24.01 128.49 123.49 103.71 76.68 22.02 70.99 62.98 11.00 4.92 27.18 16.53 77.45 26.16 56 E15a_E16a KnownJunction 0 42.08 14.67 11.89 24.17 20.46 51.62 32.77 61.57 56.08 26.06 124.77 167.15 106.65 68.28 19.90 42.98 41.42 6.05 0.00 8.95 16.12 56.40 29.79 57 ER16a ExonRegion 0 37.88 24.13 15.34 32.91 57.84 43.54 35.27 63.68 57.91 24.31 118.44 173.96 90.94 73.42 26.61 70.84 58.10 8.34 8.81 24.22 13.36 85.46 39.25 58 E16a_E17a KnownJunction 1 62.90 56.96 22.62 39.59 89.47 40.37 30.74 89.25 66.87 33.82 129.30 174.51 43.99 128.91 41.66 91.86 64.33 6.05 23.15 22.69 16.87 102.57 52.41 59 ER17a ExonRegion 0 38.84 27.34 12.31 15.80 48.97 50.74 23.07 39.89 49.62 23.64 100.39 140.41 63.97 64.42 33.75 55.81 60.96 12.80 10.82 17.50 10.34 62.76 26.51 60 E17_Da NovelBoundary 1 6.30 6.38 1.12 3.90 3.40 2.78 10.29 14.70 23.23 5.83 4.95 30.31 46.26 9.30 4.45 20.68 16.46 0.00 0.00 5.69 0.00 19.23 7.94 61 E17a_E18a KnownJunction 1 41.56 15.46 6.42 13.02 32.60 17.04 21.51 30.44 43.87 15.34 89.55 100.38 80.51 64.92 5.19 46.31 41.80 7.09 17.51 12.85 12.54 32.03 24.41 62 I17 Intron 0 11.76 10.85 2.02 3.14 9.85 9.18 6.04 8.43 14.02 5.34 9.96 17.87 21.76 11.31 5.00 7.77 7.53 2.85 2.70 9.86 2.03 19.47 3.24 63 I17_SR1 SilentIntronRegion 0 11.78 10.86 2.02 3.14 9.86 9.19 6.05 8.45 14.04 5.35 9.97 17.90 21.80 11.33 5.01 7.78 7.54 2.85 2.70 9.88 2.03 19.50 3.25 64 E18_Aa NovelBoundary 0 47.42 15.13 12.12 1.66 22.07 18.00 8.08 12.61 24.19 7.25 16.95 12.45 14.12 4.41 4.45 3.67 0.00 0.00 0.00 20.90 2.41 15.55 3.67 65 ER18a ExonRegion 0 69.15 59.98 10.92 21.22 48.66 41.07 18.23 36.70 57.23 23.53 137.01 108.35 63.72 81.59 42.85 58.97 56.35 13.51 6.69 26.29 33.35 58.83 37.54 66 E18a_E19a KnownJunction 0 95.57 88.93 14.37 30.33 58.23 84.55 20.58 41.44 71.82 30.33 136.19 62.27 69.15 89.41 40.55 57.59 51.43 10.07 9.32 30.74 30.89 78.62 37.30 67 ER19a ExonRegion 0 68.79 53.75 28.89 41.92 59.58 74.20 28.92 51.51 71.12 31.79 144.44 96.34 85.91 99.75 38.06 72.35 76.51 21.12 8.86 30.60 40.82 68.25 31.58 68 E19a_E20a KnownJunction 0 125.95 54.14 37.91 56.84 72.50 102.90 35.77 61.28 66.41 33.44 161.46 114.04 68.66 75.40 36.22 76.39 62.93 22.09 4.42 17.51 47.01 75.44 33.04 69 ER20a ExonRegion 0 78.23 47.26 37.89 42.91 50.31 77.84 18.21 55.68 73.12 33.94 155.79 109.66 82.09 114.07 48.43 98.28 72.07 37.86 11.72 30.19 68.93 66.98 47.46 70 E20a_E21a KnownJunction 1 90.61 50.58 33.17 40.29 61.46 73.54 23.05 53.56 75.75 31.08 159.09 127.69 32.79 129.79 51.18 73.40 79.10 28.35 29.55 26.72 86.67 79.85 25.44 71 ER21a ExonRegion 0 79.36 42.51 31.01 28.73 46.70 68.55 24.10 56.96 73.31 32.37 133.36 74.72 63.34 99.60 46.71 87.33 61.12 35.37 10.98 31.94 55.80 55.07 40.88 72 E21a_E22a KnownJunction 1 96.91 52.10 21.79 33.26 83.45 80.52 18.55 69.70 69.41 41.02 148.51 30.91 74.35 123.32 71.82 84.08 65.08 20.06 18.17 44.29 38.12 69.01 12.72 73 ER22a ExonRegion 0 127.69 80.69 36.77 49.22 72.29 70.81 26.16 63.51 67.03 37.81 138.69 73.19 106.52 82.51 54.13 57.83 69.79 17.96 9.30 40.53 25.26 73.24 33.78 74 E22a_E23a KnownJunction 0 225.15 82.75 26.40 49.84 94.65 90.91 59.62 79.03 65.60 32.02 141.67 95.13 104.86 70.28 73.06 63.57 70.31 12.64 16.66 31.89 16.80 58.11 30.47 75 ER23a ExonRegion 0 150.90 56.26 28.45 56.32 87.46 96.24 41.88 81.87 87.01 42.66 163.12 107.16 138.69 104.46 63.84 78.25 83.71 23.01 12.80 42.09 33.65 109.22 51.43 76 E23a_E24a KnownJunction 0 203.52 63.15 21.05 43.22 103.06 75.92 26.32 77.42 93.92 40.48 193.58 83.73 115.25 95.30 67.25 76.56 102.57 30.63 57.60 36.69 49.55 130.18 75.29 77 ER24a ExonRegion 0 153.50 54.96 22.84 41.81 72.95 70.15 26.02 83.93 79.03 37.95 176.60 91.98 95.39 100.71 77.10 78.94 103.98 30.88 31.72 36.31 56.94 91.29 59.26 78 E24a_E25b KnownJunction 0 312.35 69.00 19.63 37.86 74.62 76.55 57.85 101.54 78.82 43.78 212.84 75.92 71.26 119.37 105.57 79.55 113.14 24.79 45.65 36.56 62.09 82.05 67.69 79 E25_Aa NovelBoundary 0 10.96 0.00 3.10 5.19 4.07 5.45 11.26 4.27 6.51 2.95 0.00 6.30 14.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.60 0.00 80 ER25a ExonRegion 0 13.75 4.77 5.90 6.43 6.32 2.15 3.47 9.40 4.90 4.36 4.34 11.58 9.04 1.52 2.34 3.64 1.21 0.97 0.09 3.91 2.68 10.51 0.14 81 E25_Ab KnownBoundary 0 39.86 3.16 10.47 6.76 7.22 2.73 0.00 18.20 9.23 6.77 7.69 0.00 0.00 2.83 4.45 7.60 0.00 0.00 0.00 0.00 2.84 13.84 0.00 82 ER25b ExonRegion 0 232.85 71.64 39.59 41.12 66.94 78.53 44.16 92.50 68.27 41.47 177.72 91.42 84.71 104.03 75.00 84.43 99.76 22.58 25.76 32.14 37.58 93.06 59.07 83 E25a_E26a KnownJunction 0 166.33 94.06 28.68 59.70 90.32 132.82 48.89 91.80 82.46 46.07 152.93 69.02 86.84 116.13 89.50 78.95 56.94 31.59 18.35 36.05 20.14 71.58 35.60 84 ER26a ExonRegion 0 201.41 62.43 39.76 57.58 132.83 102.72 55.84 110.34 85.25 39.47 122.64 143.60 185.12 79.24 72.43 87.64 64.70 12.88 23.09 32.19 21.51 135.40 47.15 85 E26_Da KnownBoundary 1 163.07 43.48 64.25 52.67 104.16 45.31 81.44 81.90 68.34 28.85 46.96 54.77 101.29 47.27 32.26 51.27 20.57 3.73 14.02 27.10 5.37 107.95 4.35 86 ER26b ExonRegion 0 61.64 29.53 30.18 37.92 65.02 52.16 24.54 57.79 58.58 26.21 46.40 56.57 68.38 34.62 37.81 25.71 16.39 6.06 4.87 14.76 5.80 61.52 14.34 87 IG43_AR1 ActiveIntergenicRegion 0 37.16 30.02 19.23 27.93 33.42 29.16 14.40 37.38 35.73 15.24 5.62 18.53 15.70 5.82 9.96 6.39 2.50 3.08 3.12 8.75 1.88 15.22 3.25