Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	CYHR1	Gene	0	49.02	25.80	120.10	71.00	28.33	69.59	20.50	75.34	69.56	91.40	52.39	13.62	18.98	63.10	92.22	64.06	48.44	83.63	69.66	47.72	97.02	42.23	47.51
2	424149	Transcript	0	0.00	0.66	0.00	1.35	0.00	2.41	3.35	0.84	0.05	2.20	0.04	0.00	0.00	0.44	0.67	6.77	1.08	0.02	9.04	0.71	7.48	0.68	1.92
3	403000	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	438911	Transcript	0	78.78	49.21	264.50	151.68	68.61	146.13	38.66	140.73	146.03	206.92	99.54	33.93	53.55	120.80	204.14	137.85	121.81	135.01	124.87	53.01	147.30	57.12	52.36
5	306145	Transcript	0	10.82	8.55	8.57	10.99	12.39	16.35	3.62	6.53	2.66	16.22	2.63	6.30	0.00	0.00	9.64	0.00	4.39	13.18	35.01	11.19	13.78	3.12	3.50
6	292543	Transcript	1	39.24	13.44	61.06	18.68	18.91	36.82	12.73	33.14	35.47	31.27	37.62	12.17	2.20	44.42	63.21	35.45	16.14	77.65	39.83	40.43	74.24	29.45	41.59
7	IG30	Intergenic	0	1.01	0.65	2.61	0.65	0.00	9.32	2.31	5.32	4.09	4.34	4.61	0.00	0.00	7.03	5.45	6.14	2.62	4.82	24.80	2.37	4.20	1.99	6.07
8	IG30_SR1	SilentIntergenicRegion	0	1.07	0.69	2.78	0.69	0.00	9.71	2.32	5.65	4.35	4.62	4.90	0.00	0.00	7.38	5.64	6.52	2.79	5.12	26.36	2.52	4.47	2.11	6.45
9	ER1a	ExonRegion	0	0.00	1.33	0.00	0.94	0.00	4.82	2.46	1.68	0.10	3.10	0.07	0.00	0.00	0.87	1.34	5.33	2.16	0.05	13.27	1.42	9.46	1.36	3.84
10	E1a_E2c	KnownJunction	0	0.00	0.00	0.00	1.76	0.00	0.00	4.24	0.00	0.00	1.29	0.00	0.00	0.00	0.00	0.00	8.20	0.00	0.00	4.80	0.00	5.50	0.00	0.00
11	ER2a	ExonRegion	0	7.18	7.52	0.00	0.36	2.79	3.59	2.13	1.43	0.00	2.39	1.26	0.00	0.00	1.27	3.41	9.05	1.15	2.09	8.31	4.44	8.34	4.62	4.09
12	ER2b	ExonRegion	0	28.45	20.66	10.18	15.85	8.95	23.58	7.90	8.15	1.29	10.61	5.35	0.84	0.00	8.19	22.62	14.86	6.22	8.83	30.42	19.39	20.48	17.61	22.74
13	E2_Da	KnownBoundary	0	84.46	14.08	13.01	19.98	7.56	30.89	3.84	21.36	8.51	8.30	6.79	0.00	0.00	2.47	26.58	20.51	0.00	16.87	15.06	9.78	19.40	10.96	34.06
14	E2a_E2c	KnownJunction	0	10.82	8.55	8.57	10.99	12.39	16.35	3.62	6.53	2.66	16.22	2.63	6.30	0.00	0.00	9.64	0.00	4.39	13.18	35.01	11.19	13.78	3.12	3.50
15	ER2c	ExonRegion	0	18.72	4.45	25.27	18.40	5.29	17.20	5.83	14.53	12.33	19.04	3.52	2.85	0.77	7.40	21.34	12.79	6.34	25.69	19.51	16.95	25.88	9.70	29.29
16	E2_Ac	KnownBoundary	0	38.38	3.35	37.99	38.56	8.23	56.16	30.69	27.44	13.25	35.48	12.00	0.00	0.00	4.77	19.66	3.42	7.85	17.99	37.27	22.50	42.44	9.31	10.84
17	ER2d	ExonRegion	0	41.43	13.94	42.91	45.60	10.35	61.42	23.98	40.26	30.70	44.82	24.46	8.02	5.38	13.92	25.11	10.82	14.50	33.99	55.98	39.03	69.72	13.80	24.60
18	E2_Ad	KnownBoundary	0	53.64	19.54	45.06	50.01	27.93	65.08	25.61	52.45	43.60	48.54	16.85	6.30	6.49	21.78	8.90	8.46	12.34	39.63	70.68	31.00	63.14	15.43	29.28
19	ER2e	ExonRegion	0	49.67	21.66	79.80	74.89	21.51	49.58	14.22	53.22	51.43	72.10	24.19	9.79	1.87	29.73	45.25	36.22	29.53	78.24	82.33	48.06	90.95	33.27	47.49
20	E2_Db	NovelBoundary	0	13.26	12.63	16.59	26.40	3.90	15.79	4.11	24.44	23.41	25.38	0.00	0.00	0.00	4.83	22.13	8.54	9.54	20.73	3.58	23.91	21.56	18.74	12.29
21	E2b_E3a	KnownJunction	0	34.67	29.21	69.78	49.64	18.08	50.20	23.58	50.93	31.28	60.41	21.06	12.15	0.00	20.66	24.35	31.70	34.03	67.28	26.73	30.62	81.18	15.86	30.13
22	I2	Intron	0	6.61	4.23	7.33	9.71	4.18	7.16	4.13	7.51	9.12	23.70	2.51	1.86	0.00	4.80	6.62	8.51	6.01	10.28	24.04	7.75	7.45	11.38	11.46
23	I2_AR1	ActiveIntronRegion	0	7.39	4.96	8.17	10.87	4.32	8.05	4.57	8.75	10.36	26.23	2.64	2.22	0.00	5.73	7.38	9.61	6.56	11.49	28.38	8.37	8.56	12.55	11.76
24	E3_Aa	NovelBoundary	0	14.15	5.00	11.80	17.05	19.27	0.00	5.92	18.98	17.62	29.87	4.47	0.00	0.00	4.94	10.51	0.00	8.70	19.40	16.94	16.81	10.75	7.84	15.37
25	ER3a	ExonRegion	0	47.50	35.39	82.74	62.81	26.27	47.83	14.04	48.87	44.85	69.30	27.49	3.65	3.74	34.55	45.57	23.60	28.74	94.40	65.25	45.95	93.65	31.57	42.25
26	E3_Da	KnownBoundary	0	96.46	47.43	120.01	55.97	56.79	121.86	36.35	59.64	51.39	87.33	35.48	6.30	0.00	38.55	49.45	23.58	31.42	92.15	56.47	53.18	104.09	35.21	58.73
27	E3a_E4a	KnownJunction	0	0.00	0.00	3.67	0.00	0.00	0.00	0.00	2.55	4.43	3.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.57	0.00	0.00	0.00	0.00	0.00
28	ER3b	ExonRegion	0	39.72	22.19	52.57	60.46	17.08	41.10	11.76	43.88	37.55	56.34	17.53	3.76	6.76	27.48	46.11	22.81	20.32	51.91	48.96	45.05	70.96	39.18	36.86
29	E3_Db	NovelBoundary	0	23.56	6.25	7.92	4.83	22.16	25.21	7.77	3.94	19.18	28.21	2.05	0.00	0.00	2.12	13.35	7.09	8.60	3.73	11.39	19.49	15.75	4.90	11.95
30	E3_Dc	NovelBoundary	0	2.89	0.00	2.75	3.30	16.04	4.66	5.26	7.27	19.47	12.68	0.00	0.00	0.00	2.47	0.00	4.36	4.77	13.02	27.67	0.00	25.08	0.00	7.34
31	ER3c	ExonRegion	0	19.05	5.42	3.68	7.57	9.22	11.61	1.47	6.53	1.92	5.22	3.01	0.00	4.17	5.23	2.58	2.64	0.37	4.93	10.62	6.86	8.33	7.64	0.33
32	I3	Intron	0	17.41	11.96	43.76	17.78	18.36	30.94	13.44	43.10	43.11	52.50	22.38	13.47	10.54	35.21	30.38	33.24	23.20	64.29	37.74	33.47	47.98	27.12	35.54
33	I3_SR1	SilentIntronRegion	0	2.70	3.08	9.80	6.26	9.48	5.15	2.35	17.55	19.38	25.13	2.12	3.77	0.00	2.56	2.23	2.55	0.52	11.65	12.76	8.96	19.16	9.34	11.69
34	I3_AR1	ActiveIntronRegion	0	0.97	2.27	10.28	1.70	2.30	2.78	2.39	17.06	18.62	21.20	3.19	0.10	1.24	2.22	2.53	0.24	1.59	15.86	18.75	6.14	18.33	6.79	10.40
35	I3_AR2	ActiveIntronRegion	0	2.75	3.96	4.67	3.27	2.61	10.72	4.30	4.92	1.75	3.77	6.91	2.56	4.00	16.68	28.48	13.44	17.05	6.21	14.49	7.60	22.15	9.46	2.86
36	I3_SR3	SilentIntronRegion	0	20.12	6.78	34.30	13.50	18.05	26.93	14.58	49.52	54.52	62.21	27.86	38.90	33.88	53.38	42.58	31.99	34.66	61.58	59.13	35.95	67.75	38.36	40.03
37	I3_AR3	ActiveIntronRegion	0	12.24	7.54	29.11	15.83	16.49	24.85	12.78	33.33	38.11	43.26	26.85	17.10	11.37	47.25	32.40	38.59	28.21	77.97	56.91	42.53	53.71	30.11	45.92
38	I3_SR4	SilentIntronRegion	1	11.06	9.00	27.11	14.27	13.74	29.76	14.89	37.76	37.44	51.68	20.72	9.40	6.44	34.90	26.26	34.91	23.68	68.47	36.77	35.01	49.34	20.13	31.72
39	I3_AR4	ActiveIntronRegion	0	18.80	14.50	43.46	16.94	18.63	28.45	16.51	47.67	50.92	58.52	26.02	15.33	14.31	42.58	41.23	45.98	25.47	76.74	45.62	45.72	52.97	34.04	40.30
40	I3_SR5	SilentIntronRegion	1	18.50	14.92	32.11	16.69	21.79	37.33	16.86	44.85	46.90	58.07	27.46	15.14	10.40	42.38	27.68	37.64	26.45	69.49	35.95	36.55	51.52	34.62	41.96
41	I3_AR5	ActiveIntronRegion	0	18.47	8.28	21.39	12.65	24.39	26.22	13.59	26.25	27.44	29.11	19.51	30.44	30.03	39.32	25.98	32.81	14.51	39.54	51.82	36.63	38.28	25.46	51.38
42	I3_SR6	SilentIntronRegion	0	8.21	9.73	33.58	11.90	15.95	34.69	14.41	30.65	44.04	41.98	16.11	9.45	12.22	33.08	36.20	31.80	27.51	67.52	28.82	24.85	39.67	15.11	34.28
43	I3_AR6	ActiveIntronRegion	1	12.30	9.63	41.68	11.74	11.56	32.47	9.28	38.68	43.22	54.34	28.73	6.98	4.19	34.52	33.14	36.85	29.85	78.24	36.02	32.66	49.61	21.10	41.80
44	I3_SR7	SilentIntronRegion	1	10.82	17.23	50.63	22.04	27.51	37.58	13.07	40.48	49.40	54.36	22.26	8.15	7.19	32.32	31.00	41.36	25.17	78.74	35.01	35.60	53.05	30.96	40.14
45	I3_AR7	ActiveIntronRegion	1	33.34	20.72	96.69	34.01	28.24	46.64	16.34	68.38	59.44	72.51	26.66	12.26	9.24	36.49	40.99	39.82	25.40	80.48	37.64	38.78	54.54	34.24	39.71
46	E4_Aa	NovelBoundary	0	63.49	20.46	203.51	79.14	49.83	112.55	14.13	160.60	110.94	100.60	28.48	0.00	20.45	38.79	61.19	59.64	16.74	137.83	76.61	38.29	54.61	45.99	66.84
47	ER4a	ExonRegion	0	82.70	36.37	254.89	99.71	48.82	130.78	33.47	159.28	146.41	176.22	126.63	26.81	37.32	142.81	197.21	132.12	103.76	166.10	117.39	73.56	175.17	86.52	77.31
48	E4a_E5a	KnownJunction	0	133.28	48.02	367.73	159.15	86.67	163.94	51.63	218.97	231.33	247.24	211.00	30.76	33.44	210.55	277.03	204.48	129.97	297.01	186.83	120.87	237.29	102.38	137.26
49	ER5a	ExonRegion	0	103.20	64.18	331.72	158.27	73.80	181.68	60.79	189.81	203.71	238.56	161.61	45.44	44.38	181.59	266.96	172.48	133.20	204.68	149.82	110.96	242.37	94.23	97.10
50	E5_Da	KnownBoundary	0	58.75	20.13	114.01	29.70	19.61	32.37	20.40	58.90	58.07	44.00	44.80	19.81	0.00	49.68	129.67	30.33	24.03	143.55	50.82	50.94	95.14	34.11	55.83
51	E5a_E6a	KnownJunction	0	98.91	65.98	292.72	181.40	87.78	172.85	44.96	141.05	172.08	247.40	97.76	41.41	45.13	117.66	239.57	128.17	138.10	159.06	148.71	57.78	169.15	63.13	45.33
52	ER5b	ExonRegion	1	39.24	13.44	61.06	18.68	18.91	36.82	12.73	33.14	35.47	31.27	37.62	12.17	2.20	44.42	63.21	35.45	16.14	77.65	39.83	40.43	74.24	29.45	41.59
53	E5_Db	NovelBoundary	0	54.23	44.93	85.83	33.63	26.06	30.61	43.01	50.07	51.21	49.80	60.23	12.00	0.00	50.50	56.74	47.51	22.07	108.86	76.80	37.78	62.40	26.58	35.43
54	I5	Intron	1	31.10	9.86	44.81	28.08	10.56	23.23	9.20	37.85	27.72	30.62	26.31	2.77	3.06	29.40	55.33	22.91	17.20	53.65	18.79	29.88	40.52	28.13	30.51
55	I5_AR1	ActiveIntronRegion	1	40.84	13.02	58.83	37.05	13.79	30.56	11.88	48.68	36.11	40.30	34.77	3.68	4.07	38.89	72.73	29.36	22.73	71.11	24.24	39.76	53.80	36.93	40.25
56	ER6a	ExonRegion	0	58.66	32.45	236.28	121.96	49.45	119.41	32.37	140.41	119.99	166.44	101.31	26.45	61.96	123.93	168.70	147.54	105.52	110.97	101.03	48.24	125.45	51.12	59.39
57	IG29_AR1	ActiveIntergenicRegion	0	16.95	11.72	44.59	23.41	13.63	33.81	8.57	29.24	29.75	43.16	22.91	6.47	11.44	39.84	44.58	34.08	21.66	16.70	28.30	9.94	39.37	12.77	16.93