Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PPP1R16A Gene 0 12.73 21.14 54.37 52.34 18.31 43.02 16.38 61.83 44.15 93.27 65.91 10.57 9.50 64.19 80.20 65.32 37.17 81.98 71.14 44.12 61.55 47.94 42.45 2 292539 Transcript 0 7.60 14.09 47.20 44.21 12.66 41.01 12.73 36.27 40.59 77.51 77.89 3.87 9.39 45.27 63.56 75.75 36.56 86.19 74.34 37.55 73.33 48.61 46.38 3 435887 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 IG31_AR1 ActiveIntergenicRegion 0 8.87 12.06 1.28 4.26 4.67 17.90 9.25 0.00 3.05 11.94 19.95 0.00 0.00 12.50 16.04 27.01 10.67 19.74 23.37 7.43 3.85 6.55 8.21 5 IG31_AR3 ActiveIntergenicRegion 0 1.25 0.00 0.54 1.20 0.00 0.54 0.39 0.00 0.54 1.50 0.57 0.00 0.00 0.79 0.00 0.88 0.97 1.62 1.88 0.63 9.74 4.91 1.73 6 ER1a ExonRegion 0 2.77 8.70 34.30 37.64 2.45 16.70 4.77 26.53 29.73 61.99 68.21 6.09 7.40 31.29 44.05 59.90 32.35 76.23 54.62 29.13 52.84 41.13 30.91 7 E1a_E2a KnownJunction 0 6.45 8.68 55.82 43.75 16.89 53.44 12.76 34.54 45.60 87.01 91.50 0.00 12.99 38.73 74.66 96.04 33.57 87.26 91.11 38.09 86.18 49.05 61.80 8 I1_AR1 ActiveIntronRegion 0 17.73 11.00 47.65 30.55 14.56 19.89 11.84 58.40 33.34 32.42 9.49 3.11 15.53 23.67 23.18 18.33 14.16 53.22 26.26 26.38 34.51 21.95 18.19 9 I1_AR3 ActiveIntronRegion 0 0.45 2.43 9.25 9.29 2.64 11.74 3.91 9.97 15.02 7.21 3.13 1.25 2.50 7.79 7.38 7.53 6.73 19.57 18.60 6.13 11.78 8.21 8.47 10 E2_Aa NovelBoundary 1 15.34 5.13 26.67 17.28 3.99 9.82 1.90 19.88 19.53 15.71 4.37 0.00 5.68 21.25 19.53 0.00 24.12 12.77 13.37 11.19 19.15 0.00 21.60 11 ER2a ExonRegion 0 13.60 24.89 51.48 51.25 18.64 52.89 20.65 47.73 46.44 83.54 73.97 5.53 7.79 65.78 71.95 71.32 43.76 95.08 77.28 45.43 80.97 55.66 46.42 12 E2_Ab KnownBoundary 0 31.86 40.39 87.64 75.35 17.66 34.64 16.56 64.77 65.86 116.58 62.49 13.05 14.93 105.48 79.98 88.18 49.37 148.86 86.78 64.11 92.48 62.52 76.57 13 ER2b ExonRegion 0 13.14 22.87 56.14 54.45 19.31 48.40 18.73 61.86 48.84 99.68 74.35 7.85 7.23 75.99 60.67 71.20 39.88 95.81 74.39 40.05 70.11 49.39 43.17 14 E2_Da NovelBoundary 0 3.41 15.26 26.43 20.94 16.38 28.62 5.65 14.99 7.90 35.94 19.64 0.00 0.00 7.06 18.91 31.36 12.53 20.52 31.25 7.54 16.31 5.88 0.00 15 E2a_E3a KnownJunction 0 13.11 23.09 31.08 64.13 14.09 49.80 31.53 76.23 51.30 113.87 56.44 5.70 6.82 55.51 35.48 11.11 31.51 66.45 62.50 44.61 54.30 52.66 42.00 16 I2 Intron 0 5.74 6.86 23.21 19.76 8.61 18.41 8.21 17.77 14.05 27.36 19.48 2.35 4.32 25.36 21.35 24.07 14.46 46.45 26.42 14.92 23.06 14.94 20.71 17 I2_AR1 ActiveIntronRegion 0 5.75 6.87 23.25 19.79 8.62 18.43 8.22 17.80 14.07 27.40 19.51 2.35 4.33 25.40 21.38 24.11 14.48 46.51 26.46 14.95 23.09 14.96 20.74 18 E3_Aa NovelBoundary 0 14.00 5.72 31.78 42.98 7.64 10.39 28.88 34.30 23.87 54.74 14.16 6.30 6.49 21.90 24.11 11.54 21.13 63.05 28.14 24.67 19.40 24.55 46.10 19 ER3a ExonRegion 0 23.91 36.15 43.99 73.42 26.12 65.86 29.50 78.95 56.57 114.84 75.41 15.18 13.54 71.92 85.98 62.33 64.81 107.33 94.89 63.71 57.98 67.00 68.82 20 E3_Da NovelBoundary 0 3.78 3.09 33.23 10.62 4.33 10.79 4.24 26.57 15.13 22.08 5.05 0.00 13.64 14.24 28.43 0.00 0.00 29.85 18.26 18.09 13.53 8.94 11.61 21 E3a_E4a KnownJunction 0 24.23 27.30 70.10 99.32 42.28 64.62 19.12 102.89 64.32 119.35 71.65 12.90 6.82 89.88 87.15 104.67 47.22 135.64 101.93 73.44 59.68 58.29 71.96 22 I3_AR1 ActiveIntronRegion 0 0.00 0.00 0.00 0.00 0.00 3.84 1.85 0.00 0.00 0.00 1.35 2.14 2.70 4.67 7.71 2.08 0.00 0.00 2.23 7.40 10.78 2.88 10.26 23 E4_Aa NovelBoundary 0 26.08 6.31 38.82 20.41 7.89 18.11 8.48 42.31 25.52 22.97 2.42 6.30 0.00 24.25 5.07 27.77 17.30 54.18 44.80 39.05 23.35 15.37 4.18 24 ER4a ExonRegion 0 14.53 26.21 65.31 76.22 28.70 46.11 21.31 96.08 65.97 120.09 76.40 14.47 12.91 86.20 98.13 99.22 47.70 115.12 100.49 76.42 68.60 55.87 47.09 25 E4_Da NovelBoundary 0 10.37 9.01 34.89 18.55 7.72 19.48 18.02 38.24 35.45 21.70 4.79 6.30 0.00 19.13 28.56 20.25 18.23 66.20 39.15 20.26 20.14 13.72 23.90 26 E4a_E5a KnownJunction 0 13.26 36.90 67.86 70.32 18.76 40.20 22.30 84.57 44.68 108.12 54.70 13.95 6.49 65.04 82.33 72.72 29.64 50.53 73.60 72.80 43.49 68.89 46.69 27 I4 Intron 0 3.79 3.14 17.90 8.49 5.46 8.30 5.86 14.87 10.35 16.07 7.69 2.69 2.58 15.06 19.11 16.41 9.85 31.44 17.28 17.89 12.93 11.30 10.96 28 I4_AR1 ActiveIntronRegion 0 3.80 3.14 17.93 8.51 5.47 8.32 5.87 14.89 10.37 16.10 7.71 2.69 2.59 15.09 19.14 16.45 9.87 31.50 17.31 17.93 12.96 11.32 10.98 29 E5_Aa NovelBoundary 0 0.00 0.00 17.71 8.96 3.65 0.00 6.05 12.77 14.21 15.74 14.27 0.00 6.82 16.60 4.45 15.89 8.04 30.92 20.14 26.21 10.38 8.14 19.80 30 ER5a ExonRegion 0 22.92 27.77 72.82 64.67 19.91 50.91 27.50 77.12 40.82 117.01 68.79 10.78 16.42 63.36 93.23 49.13 45.23 36.80 73.45 60.27 42.95 44.76 49.05 31 E5_Da NovelBoundary 0 0.00 3.09 28.00 14.35 4.24 5.68 25.31 17.58 13.72 17.14 14.42 0.00 6.82 20.60 8.90 16.15 3.83 23.55 30.21 20.90 5.99 2.45 7.68 32 E5a_E6a KnownJunction 1 7.56 36.31 40.68 36.93 15.20 44.12 22.13 65.43 33.04 89.96 33.96 12.60 12.50 31.20 58.47 97.92 22.07 66.86 53.55 45.83 47.45 34.47 26.38 33 E6_Aa NovelBoundary 0 3.70 6.64 21.76 14.02 12.14 21.29 6.14 16.72 10.68 29.17 15.16 5.70 0.00 19.19 4.45 24.01 4.30 47.55 14.02 21.48 14.76 11.57 15.79 34 ER6a ExonRegion 0 12.68 21.56 45.07 45.17 24.57 43.42 12.89 45.42 30.85 78.65 57.45 10.32 15.91 58.18 76.78 75.71 34.38 62.08 75.68 40.87 43.60 50.05 41.32 35 E6a_E7a KnownJunction 0 13.11 8.81 43.64 50.94 11.54 52.70 21.33 48.43 26.97 76.77 14.85 18.46 8.28 62.28 93.21 38.79 12.72 62.06 55.81 12.34 28.66 35.94 35.17 36 E7_Aa NovelBoundary 0 9.78 6.18 48.43 27.34 15.28 26.06 8.17 42.31 14.24 38.98 16.58 0.00 6.49 29.37 23.61 25.29 8.60 64.46 45.27 20.77 10.75 8.82 16.13 37 ER7a ExonRegion 0 13.72 10.46 40.20 36.28 10.09 27.58 10.41 45.82 25.92 76.53 43.06 12.85 8.41 58.24 72.46 45.31 29.84 40.86 35.80 31.80 49.65 37.73 44.38 38 E7_Da NovelBoundary 0 3.41 0.00 9.55 2.03 0.00 2.67 0.00 8.91 10.97 9.99 9.27 6.30 0.00 21.48 4.45 12.90 0.00 24.95 9.22 9.72 8.53 3.00 8.37 39 E7a_E8a KnownJunction 0 10.22 11.64 45.09 45.58 16.89 33.56 13.38 59.93 28.82 78.92 60.86 5.85 6.82 66.16 55.26 46.14 12.53 66.66 51.77 50.24 53.62 39.31 65.13 40 E8_Aa NovelBoundary 0 0.00 0.00 19.22 3.03 0.00 0.00 0.00 16.96 19.07 23.07 4.53 0.00 0.00 12.30 18.30 0.00 8.42 42.49 15.44 16.81 14.33 0.00 4.35 41 ER8a ExonRegion 0 12.67 26.36 69.14 67.52 21.86 41.67 17.12 71.94 38.50 95.33 71.47 13.62 10.55 76.21 114.14 62.45 35.66 109.31 91.03 43.45 60.89 38.11 46.29 42 E8_Da NovelBoundary 0 0.00 0.00 9.91 1.70 3.82 7.61 2.08 14.75 5.87 11.55 4.79 0.00 6.82 4.83 8.90 7.26 3.83 36.31 8.94 12.78 14.70 6.12 3.16 43 E8a_E9a KnownJunction 0 11.34 44.14 79.65 69.22 35.31 83.53 16.34 82.11 53.47 113.71 68.07 18.61 6.82 86.29 109.28 77.33 31.04 105.62 56.28 31.00 56.96 45.19 50.28 44 E9_Aa NovelBoundary 0 0.00 3.16 11.00 3.66 0.00 5.79 0.00 16.35 9.66 17.57 2.58 0.00 6.82 9.89 22.87 0.00 3.65 45.52 17.60 10.99 5.62 10.47 0.00 45 ER9a ExonRegion 0 8.38 16.64 44.01 38.39 14.63 52.95 15.32 49.94 34.03 71.60 52.20 13.25 12.27 55.68 95.85 48.56 31.56 61.13 46.78 26.79 52.52 27.33 38.58 46 E9a_E10a KnownJunction 1 7.04 18.35 40.12 34.89 15.70 50.82 22.66 46.91 29.83 66.19 54.22 6.30 14.77 19.72 95.19 28.20 25.71 63.17 29.93 16.94 40.96 28.29 23.73 47 E10_Aa NovelBoundary 0 3.78 0.00 0.00 7.49 0.00 33.50 0.00 1.81 7.41 7.63 2.58 5.25 0.00 14.54 8.90 0.00 0.00 21.39 4.71 3.07 8.53 0.00 0.00 48 ER10a ExonRegion 0 13.80 18.35 59.92 48.68 15.10 33.72 11.17 77.79 51.26 90.16 66.94 11.03 7.88 53.96 113.20 82.61 37.28 105.27 74.17 34.30 62.51 55.43 47.00 49 E10_Da NovelBoundary 0 3.63 3.29 9.79 6.99 0.00 0.00 2.08 7.64 6.37 9.70 0.00 0.00 0.00 12.42 17.80 0.00 13.93 34.99 9.60 6.52 14.58 2.76 3.84 50 E10a_E11a KnownJunction 0 22.67 8.62 65.91 68.36 20.71 27.82 14.00 61.82 62.47 118.03 103.18 12.60 0.00 34.61 82.95 63.32 56.10 97.25 54.40 37.39 68.63 44.03 27.91 51 I10 Intron 0 0.96 0.92 10.76 2.76 5.46 4.16 1.50 7.59 4.59 9.68 5.70 2.31 0.88 12.47 15.86 9.43 4.49 20.20 7.93 11.09 14.48 5.67 5.33 52 I10_SR1 SilentIntronRegion 0 1.22 1.17 11.91 3.13 6.94 4.50 1.47 8.44 5.22 11.32 5.96 2.74 1.11 13.89 14.87 11.37 3.99 23.73 8.78 12.21 16.30 6.73 6.65 53 I10_AR1 ActiveIntronRegion 0 0.00 0.00 7.02 1.52 0.00 3.17 1.78 4.83 2.41 3.99 5.05 0.79 0.00 7.86 21.30 2.50 6.90 7.85 5.21 7.59 8.46 1.89 0.47 54 E11_Aa NovelBoundary 0 0.00 3.09 13.63 12.59 3.65 10.85 6.58 8.21 11.34 22.13 4.95 0.00 6.33 16.83 13.35 4.19 0.00 33.00 17.32 14.25 8.96 0.00 12.46 55 ER11a ExonRegion 0 11.69 20.10 58.49 51.10 19.50 38.74 13.89 68.99 42.99 97.59 55.84 14.36 9.72 58.30 96.23 53.28 28.64 65.27 67.35 49.66 55.05 46.46 36.74 56 IG32 Intergenic 0 1.84 1.55 8.66 4.17 1.90 5.60 1.92 8.55 8.97 10.27 4.43 3.64 4.64 11.63 12.34 6.34 7.04 22.81 12.17 10.37 10.04 2.91 5.03 57 IG32_SR1 SilentIntergenicRegion 0 1.30 1.66 11.82 5.63 3.83 3.45 2.52 9.70 11.52 13.68 6.97 2.30 4.28 12.17 17.83 8.42 13.85 36.68 22.18 14.59 12.26 3.79 4.63 58 IG32_AR1 ActiveIntergenicRegion 0 0.00 0.00 9.80 5.45 5.35 2.14 7.94 10.37 14.82 12.23 3.22 4.33 9.38 10.56 10.64 8.92 15.40 43.73 30.26 14.18 2.20 3.82 14.68 59 IG32_SR2 SilentIntergenicRegion 0 3.25 1.53 12.73 5.98 2.93 7.35 2.33 11.91 9.36 14.54 4.66 6.30 8.55 15.12 16.21 7.94 7.82 29.13 16.69 12.26 15.97 3.68 7.99 60 IG32_AR2 ActiveIntergenicRegion 0 1.95 0.94 5.89 3.02 0.00 1.20 2.08 11.01 10.00 6.48 2.77 4.61 3.46 10.26 8.59 3.77 5.80 19.33 9.16 6.12 6.03 1.58 4.99 61 IG32_SR3 SilentIntergenicRegion 0 1.54 2.27 7.50 2.95 0.93 5.49 1.41 8.06 8.98 7.09 4.21 3.40 3.16 9.11 11.24 6.28 5.54 17.46 6.70 11.32 6.69 3.26 4.32 62 IG32_AR3 ActiveIntergenicRegion 0 0.31 0.61 2.59 2.59 1.19 6.42 1.48 1.68 5.95 7.55 3.35 0.00 1.15 10.21 5.31 3.34 3.78 12.28 7.51 4.32 5.90 0.93 1.31