Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AF205589.1 Gene 0 20.40 3.98 34.05 23.03 3.66 12.30 4.92 14.05 14.50 10.49 0.19 4.44 4.97 19.97 49.94 20.74 10.78 21.12 21.79 13.52 20.16 8.92 10.96 2 301305 Transcript 0 0.19 0.18 8.29 8.16 1.87 4.32 1.04 4.27 4.74 5.52 0.17 0.31 0.00 0.59 0.36 0.00 0.00 4.90 2.50 2.42 0.00 0.18 0.51 3 276833 Transcript 0 0.98 0.70 14.81 17.27 2.77 5.77 2.44 8.30 4.49 9.08 0.00 0.41 0.00 1.44 0.81 0.68 0.00 11.54 10.39 4.11 0.76 1.16 1.24 4 IG27 Intergenic 0 1.45 2.59 16.11 18.63 3.75 6.67 3.71 9.65 6.96 8.93 0.32 0.13 0.39 0.87 1.48 0.33 0.43 8.66 6.35 4.44 1.71 0.42 0.60 5 IG27_SR1 SilentIntergenicRegion 0 1.46 2.61 16.23 18.77 3.78 6.72 3.74 9.72 7.01 8.99 0.32 0.13 0.38 0.88 1.49 0.33 0.43 8.73 6.39 4.46 1.72 0.43 0.60 6 ER1a ExonRegion 0 0.38 0.36 16.58 16.33 3.74 8.65 2.08 8.55 7.94 11.04 0.34 0.62 0.00 1.18 0.72 0.00 0.00 9.80 5.01 4.83 0.00 0.36 1.03 7 E1_Da NovelBoundary 0 0.00 5.72 12.98 20.74 3.48 9.60 1.68 5.34 2.55 21.44 0.00 0.00 0.00 0.00 0.00 4.36 0.00 9.08 9.41 2.81 0.00 0.00 0.00 8 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 E2_Aa NovelBoundary 0 0.00 0.00 17.24 26.24 0.00 2.78 0.00 11.09 10.76 14.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.65 7.81 0.00 0.00 0.00 0.00 10 ER2a ExonRegion 0 0.98 0.70 14.81 17.27 2.77 5.77 2.44 8.30 4.49 9.08 0.00 0.41 0.00 1.44 0.81 0.68 0.00 11.54 10.39 4.11 0.76 1.16 1.24 11 E2_Ab KnownBoundary 0 0.00 2.63 28.30 13.75 0.00 14.03 0.00 3.90 6.92 3.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.49 25.41 6.33 0.00 0.00 4.18 12 ER2b ExonRegion 0 0.36 0.74 14.44 11.47 1.91 7.04 2.88 4.26 6.04 5.75 0.00 0.00 0.00 1.42 0.74 0.00 0.00 5.31 8.00 4.72 0.80 0.44 1.24 13 E2_Da NovelBoundary 0 0.00 0.00 9.17 16.68 8.32 0.00 0.00 10.10 1.79 12.09 0.00 0.00 0.00 6.42 0.00 4.02 0.00 5.97 4.24 5.24 0.00 0.00 0.00 14 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 1.79 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.76 0.00 0.00 0.00 0.00 15 I2 Intron 0 0.55 0.80 16.72 14.34 2.45 6.23 2.94 7.41 5.78 10.95 0.00 0.47 0.00 0.82 1.56 1.17 0.86 6.00 9.17 3.62 2.02 0.54 1.15 16 I2_AR1 ActiveIntronRegion 0 0.41 0.00 17.17 12.98 1.62 3.69 1.85 5.39 4.98 8.58 0.00 0.00 0.00 1.06 0.71 0.67 1.11 4.86 8.50 3.58 2.42 0.35 1.09 17 I2_SR1 SilentIntronRegion 0 1.10 3.66 15.50 19.55 5.45 15.47 6.92 14.80 8.75 19.66 0.00 2.14 0.00 0.00 4.64 2.97 0.00 10.22 11.69 3.83 0.62 1.25 1.42 18 E3_Aa NovelBoundary 0 0.00 0.00 22.50 12.02 3.14 0.00 1.99 5.09 7.49 11.34 0.00 0.00 0.00 2.12 0.00 0.00 0.00 3.77 4.80 0.00 0.00 0.00 0.00 19 ER3a ExonRegion 0 1.12 0.12 21.23 15.63 1.46 8.73 2.10 9.27 11.35 16.41 0.00 0.00 0.00 1.01 4.69 0.79 0.00 11.90 10.89 7.31 1.16 0.60 0.78 20 E3_Da NovelBoundary 0 2.89 5.92 46.89 36.03 4.24 10.79 2.03 4.39 8.85 11.17 0.00 0.00 0.00 0.00 0.00 3.42 0.00 4.39 0.00 5.18 3.15 0.00 0.00 21 E3a_E4a KnownJunction 0 0.00 2.76 0.00 0.00 0.00 2.90 0.00 2.26 4.86 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.58 0.00 0.00 0.00 0.00 22 E4_Aa NovelBoundary 0 7.26 5.26 45.09 29.07 0.00 13.17 4.11 11.46 11.31 20.76 0.00 0.00 0.00 2.47 0.00 0.00 0.00 23.26 11.48 9.08 0.00 3.12 0.00 23 ER4a ExonRegion 0 1.58 0.59 19.47 14.22 0.00 6.40 1.97 8.00 8.98 6.61 0.00 0.00 0.00 0.43 1.52 1.11 0.00 12.95 6.98 3.09 0.00 0.70 1.09 24 E4_Da NovelBoundary 0 3.78 9.41 36.93 27.27 3.57 5.22 4.24 19.47 11.69 14.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.10 4.80 24.86 0.00 0.00 4.35 25 E4a_E5a KnownJunction 0 0.00 0.00 1.83 0.00 0.00 5.45 0.00 0.00 4.86 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E5_Aa NovelBoundary 0 0.00 0.00 29.36 20.81 0.00 0.00 3.89 24.60 3.39 15.58 0.00 0.00 0.00 0.00 4.45 0.00 0.00 24.46 0.00 5.82 0.00 0.00 0.00 27 ER5a ExonRegion 0 2.51 1.81 16.44 10.28 3.17 9.33 2.75 11.13 11.25 7.93 0.00 0.00 0.00 0.79 0.61 0.88 0.00 13.15 6.61 8.89 0.83 0.62 1.45 28 E5_Da NovelBoundary 0 0.00 0.00 28.98 13.58 6.88 2.67 10.02 7.56 8.39 15.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.90 3.86 13.87 0.00 0.00 0.00 29 E5a_E6a KnownJunction 0 0.00 0.00 2.96 0.00 0.00 2.33 0.00 6.28 9.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 4.10 30 I5 Intron 0 1.12 1.43 15.74 6.43 0.47 6.13 3.03 7.25 6.15 4.21 0.00 0.00 0.00 1.43 2.01 0.52 1.16 5.01 7.28 8.61 3.09 1.10 0.52 31 I5_SR1 SilentIntronRegion 0 1.12 1.44 15.85 6.47 0.47 6.17 3.05 7.30 6.19 4.24 0.00 0.00 0.00 1.44 2.02 0.53 1.17 5.04 7.33 8.67 3.11 1.11 0.52 32 E6_Aa NovelBoundary 0 0.00 0.00 22.97 15.52 0.00 5.45 0.00 14.25 7.55 2.95 0.00 0.00 0.00 2.12 0.00 0.00 0.00 8.00 26.35 2.94 0.00 2.88 0.00 33 ER6a ExonRegion 0 0.62 0.00 13.31 7.93 0.79 11.79 1.56 9.11 12.56 4.51 0.00 0.00 0.00 0.55 1.46 0.88 0.00 3.21 8.36 3.87 2.41 0.00 2.02 34 E6a_E7a KnownJunction 0 0.00 0.00 5.17 1.83 0.00 2.90 0.00 4.07 12.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 ER7a ExonRegion 0 0.00 0.00 11.17 5.75 0.99 12.52 1.47 7.00 10.44 5.14 0.71 1.60 0.00 1.39 2.59 0.11 0.00 4.70 6.00 5.37 0.81 1.54 0.00 36 E7_Da NovelBoundary 0 0.00 0.00 24.63 16.51 4.33 10.79 1.85 6.08 5.30 5.05 0.00 0.00 0.00 2.47 0.00 0.00 0.00 15.34 17.22 8.76 3.15 0.00 0.00 37 E7a_E8a KnownJunction 0 0.00 0.00 1.71 0.00 0.00 2.56 0.00 0.00 6.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER8a ExonRegion 0 0.98 0.00 4.18 2.49 0.00 4.43 2.66 4.11 7.56 4.80 0.00 0.00 0.00 1.28 1.54 3.69 0.25 1.26 2.87 1.45 0.37 0.00 0.31 39 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 4.33 7.44 0.00 3.86 9.95 1.24 0.00 0.00 0.00 2.24 0.00 0.00 0.00 0.00 4.71 2.94 0.00 0.00 0.00 40 E9_Aa NovelBoundary 0 121.95 12.50 20.34 15.58 16.81 38.84 25.53 1.85 10.36 1.21 0.00 0.00 0.00 21.90 64.78 49.47 13.74 27.77 85.74 46.34 39.23 11.94 16.39 41 ER9a ExonRegion 0 254.98 23.92 34.00 14.84 6.37 54.41 26.38 11.97 18.44 7.72 0.00 3.07 0.00 47.84 199.03 97.11 25.33 54.83 31.45 39.30 61.74 27.09 63.86 42 E9a_E10a KnownJunction 0 162.25 14.47 72.29 35.93 11.71 31.69 17.71 25.01 29.40 13.81 0.00 0.00 0.00 12.30 64.65 30.93 3.83 95.47 28.42 14.13 26.69 7.53 31.84 43 E9a_E11a NovelJunction 0 11.71 5.33 11.77 5.33 7.47 25.16 30.52 2.09 6.16 1.48 0.00 0.00 0.00 0.00 29.79 23.58 8.51 2.36 4.52 0.00 2.29 2.45 0.00 44 E10_Aa NovelBoundary 0 0.00 2.83 3.67 5.06 0.00 0.00 0.00 2.18 3.59 1.48 0.00 0.00 0.00 2.12 0.00 4.02 9.26 8.37 16.85 3.26 13.78 0.00 3.76 45 ER10a ExonRegion 0 47.19 13.22 49.77 25.34 2.66 10.83 4.69 18.57 22.26 10.52 0.00 3.37 2.42 29.17 90.74 25.16 12.88 31.29 28.63 27.59 45.23 16.49 15.80 46 E10a_E11a KnownJunction 0 6.37 17.69 93.64 58.17 7.64 19.19 4.37 35.53 30.56 16.44 0.00 6.15 0.00 80.94 269.49 86.64 12.06 87.67 89.51 62.51 64.37 45.74 54.55 47 ER11a ExonRegion 0 1.99 9.85 127.30 74.13 10.18 32.44 14.25 45.52 47.12 21.92 0.52 20.38 19.78 94.52 269.63 86.19 35.64 60.31 67.55 52.21 84.75 43.73 47.67 48 E11_Da NovelBoundary 0 3.70 3.35 8.87 6.29 4.33 13.51 2.25 4.23 0.00 9.70 2.26 0.00 12.66 10.24 18.54 30.33 9.54 11.48 0.00 6.52 8.71 6.06 0.00 49 E11a_E12a KnownJunction 0 3.41 18.55 196.33 110.97 15.11 21.29 12.72 80.46 64.29 28.50 0.00 18.61 6.49 170.82 318.19 146.12 105.47 59.61 93.27 60.21 159.69 36.37 47.97 50 E12_Aa NovelBoundary 0 3.04 3.16 10.73 12.49 0.00 8.57 0.00 0.00 5.84 3.63 0.00 0.00 0.00 9.48 40.92 11.62 4.39 2.28 8.56 5.62 14.58 0.00 0.00 51 ER12a ExonRegion 0 118.45 16.44 103.10 65.79 11.59 22.84 13.93 37.05 34.04 19.01 0.78 25.74 35.25 99.19 206.27 108.35 71.49 74.54 90.83 37.88 98.55 38.74 45.94 52 IG26_SR1 SilentIntergenicRegion 0 3.63 1.70 6.56 1.51 2.81 6.69 1.07 12.52 8.96 3.63 1.73 2.34 0.00 7.89 2.57 1.24 1.41 6.10 3.16 7.15 7.32 2.49 2.00