Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TSNARE1 Gene 0 8.09 10.01 33.56 23.87 5.46 18.68 6.38 25.56 29.59 29.58 25.81 3.78 5.21 16.96 8.55 8.71 1.90 43.04 46.45 33.87 18.92 10.26 19.53 2 377711 Transcript 0 9.38 7.53 21.30 13.58 0.96 14.43 3.59 10.87 16.92 7.39 7.06 6.04 10.21 4.62 1.53 4.65 0.00 11.95 24.06 9.28 9.25 6.48 0.73 3 307180 Transcript 0 0.00 23.68 35.72 32.03 11.21 32.31 8.39 43.91 48.21 42.93 39.48 0.00 15.10 22.07 4.70 18.71 0.00 51.19 49.13 40.84 27.68 23.94 30.99 4 445818 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 ER1a ExonRegion 0 8.58 7.02 4.90 2.76 0.96 16.04 1.04 1.82 2.98 3.32 5.08 0.00 0.00 3.72 1.39 3.49 0.66 4.71 12.91 6.24 2.73 3.00 19.15 6 E1a_E2a KnownJunction 0 20.37 12.56 14.37 12.12 11.38 19.87 5.52 7.43 11.66 13.75 13.90 0.00 0.00 4.89 0.00 3.85 4.30 36.73 17.41 30.74 0.00 5.27 7.09 7 ER2a ExonRegion 0 6.38 3.30 20.55 12.37 3.86 9.49 2.47 11.11 12.99 21.22 14.61 6.61 3.95 8.58 2.08 3.49 0.94 19.69 33.91 25.95 12.29 8.28 14.04 8 E2a_E3a KnownJunction 0 7.11 0.00 47.46 20.78 4.33 2.90 3.44 18.24 34.23 22.00 30.43 6.15 6.82 12.30 0.00 7.86 0.00 38.72 76.43 29.79 17.73 30.86 14.08 9 E2a_E5a KnownJunction 0 2.82 0.00 0.00 1.80 0.00 0.00 0.00 2.38 0.00 5.56 6.84 0.00 0.00 0.00 0.00 0.00 0.00 4.48 4.14 2.56 9.27 0.00 0.00 10 ER3a ExonRegion 0 4.04 4.04 33.16 21.29 3.69 9.52 7.43 15.75 23.80 25.06 18.07 0.38 4.53 16.60 4.31 4.56 0.00 42.05 55.91 29.84 18.01 9.35 17.09 11 E3a_E4a KnownJunction 0 7.33 20.79 35.81 21.51 3.31 23.51 1.85 16.96 29.77 28.23 12.16 0.00 0.00 25.19 0.00 8.37 0.00 50.41 27.20 2.75 39.17 7.78 23.39 12 ER4a ExonRegion 0 9.47 9.55 30.08 20.21 4.07 19.63 6.89 24.58 29.40 29.65 31.30 2.20 5.52 21.52 13.80 10.23 3.65 48.10 53.43 40.38 25.88 11.46 22.58 13 E4a_E5a KnownJunction 0 10.08 31.51 41.16 25.70 12.22 47.81 3.49 27.77 50.40 41.80 39.59 0.00 6.01 35.49 33.50 16.32 0.00 78.26 50.73 56.69 21.44 2.27 16.90 14 ER5a ExonRegion 0 8.06 20.94 42.39 31.91 12.73 31.60 11.32 33.57 45.07 44.74 42.23 6.05 2.89 23.99 12.68 17.18 2.16 65.97 56.11 53.08 22.66 7.56 30.01 15 E5a_E6a KnownJunction 0 9.56 20.59 62.86 52.37 27.16 37.82 12.41 52.08 53.36 47.25 35.80 7.35 0.00 30.61 18.54 20.08 0.00 67.36 90.73 61.17 18.16 8.08 40.38 16 ER6a ExonRegion 0 7.17 15.34 69.69 44.68 17.77 27.45 11.63 41.48 44.31 42.73 44.04 13.55 5.63 27.59 14.63 25.43 2.40 73.25 66.89 51.40 25.09 12.68 34.40 17 E6_Da NovelBoundary 0 3.33 0.00 1.09 4.86 0.00 0.00 4.46 0.00 10.65 7.12 0.00 0.00 6.01 2.30 4.45 0.00 0.00 10.74 26.26 17.96 0.00 0.00 0.00 18 E6a_E7a KnownJunction 0 2.82 16.31 72.56 51.61 19.69 46.28 12.90 43.37 43.75 45.83 50.43 30.31 13.31 23.43 29.17 24.69 0.00 83.98 88.85 56.37 30.15 10.04 15.54 19 E7_Aa NovelBoundary 0 17.19 9.21 20.58 23.57 3.23 5.17 2.21 17.42 12.82 5.59 2.11 0.00 7.95 0.00 0.00 4.02 0.00 21.93 4.42 15.15 8.65 0.00 0.00 20 ER7a ExonRegion 0 13.98 16.22 67.38 43.51 4.97 17.73 10.48 43.91 50.56 41.54 34.13 12.51 18.55 28.82 11.96 20.84 3.59 81.36 56.95 64.51 27.87 17.63 27.91 21 E7_Da NovelBoundary 0 3.04 2.50 6.62 11.59 7.39 2.44 8.48 21.15 16.55 7.28 2.21 5.70 6.82 2.47 0.00 0.00 0.00 24.46 12.89 47.23 2.66 0.00 0.00 22 E7a_E8a KnownJunction 0 6.37 6.45 83.20 39.16 3.99 8.46 6.09 40.58 45.95 42.90 37.22 6.00 6.49 35.73 0.00 0.00 0.00 86.06 22.12 42.95 16.80 5.88 15.96 23 E7a_E8b KnownJunction 0 0.00 0.00 14.46 10.02 0.00 2.16 0.00 0.00 6.28 10.29 2.47 0.00 0.00 2.47 0.00 13.07 0.00 10.99 0.00 8.18 7.78 2.88 0.00 24 I7 Intron 0 2.02 4.52 7.99 7.96 3.97 3.20 4.71 10.34 9.63 5.02 3.93 1.70 2.32 1.15 1.95 2.56 0.71 12.51 11.04 19.12 4.79 1.05 3.09 25 I7_SR1 SilentIntronRegion 0 2.02 4.52 7.99 7.96 3.97 3.20 4.72 10.35 9.64 5.03 3.93 1.70 2.32 1.15 1.95 2.56 0.71 12.52 11.04 19.13 4.79 1.05 3.09 26 ER8a ExonRegion 0 2.12 7.63 75.67 33.73 2.01 12.84 3.64 31.98 43.23 36.99 39.14 8.66 4.69 32.89 2.90 5.20 2.48 62.82 35.04 42.02 17.08 8.85 20.56 27 ER8b ExonRegion 0 15.26 18.07 68.24 48.68 15.56 47.06 11.19 43.79 62.80 54.46 48.75 2.37 10.80 26.48 17.64 14.41 2.69 82.74 68.86 57.89 15.20 15.65 34.66 28 E8a_E9a KnownJunction 0 19.93 21.90 84.27 62.70 0.00 65.81 19.30 54.30 65.65 68.58 44.12 0.00 6.82 36.08 5.81 7.95 8.51 105.83 86.68 71.52 31.07 5.94 23.22 29 E9_Aa NovelBoundary 0 0.00 6.12 3.10 3.33 0.00 4.94 4.50 2.14 16.49 4.84 2.42 0.00 0.00 2.41 0.00 0.00 0.00 3.94 0.00 8.44 0.00 2.39 0.00 30 ER9a ExonRegion 0 14.33 29.79 84.31 66.30 13.66 45.43 16.19 64.50 72.68 76.98 67.04 13.29 9.05 31.43 7.79 27.48 1.85 122.76 115.96 58.38 33.13 30.19 48.12 31 E9a_E10a KnownJunction 0 13.11 9.14 33.00 34.96 10.78 25.78 4.20 45.02 34.06 26.51 24.11 12.90 0.00 7.18 15.95 7.60 0.00 48.25 45.65 30.23 12.79 10.59 23.05 32 E9a_E10b KnownJunction 0 0.00 23.68 35.72 32.03 11.21 32.31 8.39 43.91 48.21 42.93 39.48 0.00 15.10 22.07 4.70 18.71 0.00 51.19 49.13 40.84 27.68 23.94 30.99 33 ER10a ExonRegion 0 9.00 12.71 46.26 43.27 10.70 38.51 5.30 54.45 46.93 46.16 34.79 8.66 2.35 22.33 13.06 18.58 0.00 67.90 58.13 39.36 18.18 15.11 29.37 34 ER10b ExonRegion 0 13.36 20.14 62.57 56.38 11.35 31.72 12.53 64.12 62.78 72.76 50.44 6.03 3.59 28.73 16.16 10.35 4.24 86.95 86.95 62.20 32.83 17.58 30.04 35 E10_Da NovelBoundary 0 0.00 6.38 4.97 4.76 0.00 0.00 0.00 2.30 1.13 5.18 15.16 5.85 0.00 24.02 10.01 0.00 0.00 12.10 0.00 11.38 4.88 0.00 4.35 36 E10a_E11a KnownJunction 0 30.89 11.97 53.40 63.36 7.64 48.89 18.77 66.29 56.57 64.50 42.12 24.31 13.64 24.84 4.45 4.36 0.00 82.62 151.06 82.84 37.19 23.33 24.50 37 ER11a ExonRegion 0 14.03 12.12 37.85 35.27 6.52 31.17 3.65 41.93 36.82 36.53 24.10 5.93 8.29 18.93 8.86 3.70 0.05 52.14 76.93 45.99 18.02 15.78 21.48 38 E11_Da NovelBoundary 0 9.78 11.51 14.49 4.63 0.00 2.56 0.00 2.55 9.40 19.93 6.74 0.00 0.00 6.77 6.30 3.50 0.00 42.37 37.46 19.94 5.75 0.00 6.83 39 E11a_E12a KnownJunction 0 3.04 5.26 12.33 12.65 4.33 5.56 0.00 9.98 8.07 10.74 2.16 0.00 0.00 2.47 0.00 3.42 0.00 3.94 9.60 6.52 0.00 5.76 11.61 40 I11 Intron 0 5.15 9.87 33.95 25.17 6.59 12.12 4.83 22.06 19.38 19.95 11.78 1.24 1.90 7.89 2.20 3.51 0.43 33.41 35.57 24.29 8.72 4.37 8.80 41 I11_SR1 SilentIntronRegion 0 2.85 5.35 18.68 10.43 2.34 6.51 3.55 8.59 10.97 13.73 7.84 0.91 1.83 6.43 2.05 1.88 0.37 25.45 28.71 16.10 6.36 3.07 5.99 42 I11_AR1 ActiveIntronRegion 0 4.69 9.65 41.95 23.66 3.08 14.62 5.23 23.83 21.76 21.94 10.77 0.40 1.72 8.31 1.37 3.30 1.10 47.72 37.64 21.62 9.94 6.55 9.64 43 I11_SR2 SilentIntronRegion 0 4.28 10.84 35.36 25.46 8.89 12.46 5.61 26.56 20.17 19.76 12.39 0.78 1.78 7.18 2.13 3.53 0.12 36.82 31.37 30.82 9.29 4.19 10.11 44 I11_AR2 ActiveIntronRegion 0 4.78 10.30 44.28 33.24 9.37 11.63 7.90 28.81 24.77 23.33 15.48 2.03 1.06 11.55 1.39 7.03 0.00 34.75 44.12 28.24 10.96 5.33 10.52 45 I11_SR3 SilentIntronRegion 0 4.57 14.56 44.31 27.83 10.14 15.54 9.96 18.10 27.37 29.40 11.90 0.00 2.96 10.09 1.22 4.22 0.00 38.32 40.74 32.36 8.93 1.43 6.65 46 I11_AR3 ActiveIntronRegion 0 5.97 12.79 48.47 39.70 11.10 15.45 7.90 38.88 31.55 28.60 17.66 2.87 2.35 10.06 3.59 7.25 0.05 38.40 49.53 41.26 10.28 4.32 11.38 47 I11_SR4 SilentIntronRegion 0 8.10 18.66 58.95 42.48 12.53 17.45 7.02 41.99 29.31 28.87 20.55 0.78 1.80 11.16 2.14 3.24 2.66 43.53 52.31 36.01 7.99 7.29 11.90 48 I11_AR4 ActiveIntronRegion 0 10.44 22.99 49.84 39.66 15.31 18.54 7.42 37.09 27.75 33.93 15.57 2.50 2.79 7.73 2.21 4.30 1.11 36.99 57.85 29.29 11.28 3.42 12.27 49 I11_SR5 SilentIntronRegion 0 10.73 14.44 52.67 50.86 10.44 22.50 3.54 35.83 29.58 26.00 15.89 1.85 2.12 9.99 2.74 5.18 0.31 40.10 40.24 27.41 12.32 6.89 11.49 50 E12_Aa NovelBoundary 0 10.22 9.34 21.61 36.83 8.40 52.36 9.94 26.25 26.65 21.54 15.00 0.00 0.00 12.24 0.00 3.33 0.00 37.43 42.73 38.29 8.34 0.00 18.69 51 ER12a ExonRegion 0 8.13 11.20 34.30 12.40 4.06 16.04 4.59 18.06 31.61 16.50 21.42 2.09 7.91 16.40 1.68 6.30 0.00 3.98 19.50 17.46 27.59 13.58 13.87 52 E12_Da NovelBoundary 0 6.74 3.29 41.22 22.04 0.00 2.10 6.01 8.91 11.11 8.25 2.32 0.00 6.01 7.12 0.00 3.16 0.00 25.95 22.40 8.50 12.11 5.45 0.00 53 E12a_E13a KnownJunction 0 28.08 21.64 54.43 35.69 3.82 40.77 10.82 36.06 44.96 10.07 15.42 19.66 28.24 10.18 4.45 4.27 0.00 30.01 63.34 19.43 13.41 18.86 0.00 54 E12a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 0.00 0.00 55 I12 Intron 0 7.37 5.97 28.98 25.72 3.86 11.82 5.47 13.07 9.07 13.35 5.53 0.29 1.15 4.36 2.01 2.66 0.49 29.25 18.47 17.89 5.26 4.15 7.96 56 I12_SR1 SilentIntronRegion 0 7.38 5.97 29.01 25.74 3.86 11.83 5.47 13.08 9.08 13.36 5.54 0.29 1.15 4.37 2.01 2.66 0.49 29.28 18.48 17.91 5.27 4.15 7.97 57 E13_Aa NovelBoundary 0 42.38 29.86 70.81 64.83 20.12 51.45 18.15 17.05 7.70 23.61 7.74 0.00 0.00 0.00 4.45 4.36 0.00 40.04 35.95 39.95 3.03 6.18 7.60 58 ER13a ExonRegion 0 6.63 8.50 16.31 6.81 0.00 14.79 3.53 5.03 16.44 3.62 3.48 4.52 12.61 5.81 1.68 1.25 0.00 2.34 28.74 6.95 6.56 4.17 2.94 59 E13_Da NovelBoundary 0 24.23 52.29 110.52 85.20 23.01 23.62 23.98 52.33 65.51 40.40 37.43 0.00 12.99 25.13 0.00 16.32 0.00 68.56 63.53 39.44 19.89 11.33 27.06 60 I13_AR1 ActiveIntronRegion 0 30.39 35.30 70.49 86.06 29.38 44.42 13.20 49.77 36.56 43.91 24.77 1.83 2.33 15.37 8.34 7.45 1.54 42.12 53.12 46.70 19.35 13.61 22.52 61 I13_AR2 ActiveIntronRegion 0 21.44 35.45 34.85 38.40 46.90 37.19 15.31 31.61 26.70 38.90 2.96 0.80 0.23 6.08 1.71 1.87 1.02 15.10 20.28 27.72 9.97 12.88 14.49 62 I13_AR3 ActiveIntronRegion 0 24.32 38.84 74.78 82.05 31.48 30.24 10.10 53.47 40.47 35.95 4.40 0.29 0.54 3.37 2.37 4.16 0.54 25.51 37.94 47.80 10.25 11.34 11.67 63 ER14a ExonRegion 0 2.02 0.97 1.12 3.63 0.00 2.62 0.43 5.04 1.84 3.26 0.07 0.00 0.00 0.00 0.98 0.00 0.00 0.00 1.52 0.74 3.62 0.00 0.00 64 E14a_E15a KnownJunction 0 0.00 0.00 1.54 1.70 0.00 0.00 2.08 8.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.60 0.00 0.00 65 ER15a ExonRegion 0 0.00 0.45 1.48 1.01 0.00 0.80 0.09 2.80 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 1.71 0.00 0.00