Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC107375.3 Gene 0 20.03 24.79 31.60 15.13 19.93 27.78 37.12 28.91 32.01 35.21 122.62 115.97 150.73 136.94 64.45 96.02 117.96 139.44 90.38 131.59 112.58 109.57 123.78 2 220592 Transcript 0 18.60 18.80 34.85 12.38 15.63 20.24 30.38 26.38 30.10 34.90 120.45 104.55 128.83 146.77 70.74 97.91 122.88 149.93 93.14 132.23 115.11 103.77 125.13 3 IG6_AR2 ActiveIntergenicRegion 0 0.87 4.01 5.87 3.84 3.58 1.89 2.81 5.56 1.17 2.95 3.81 0.96 3.43 3.92 7.82 5.41 7.92 3.88 4.42 4.96 7.31 6.46 8.55 4 ER1a ExonRegion 0 0.41 0.49 1.23 0.22 0.00 0.00 1.35 0.00 1.10 1.59 5.58 0.00 1.13 15.98 10.06 1.58 1.92 8.55 8.43 12.05 4.91 4.77 4.22 5 E1a_E2a KnownJunction 0 3.11 5.06 3.67 5.03 0.00 0.00 9.45 0.00 6.22 3.71 17.74 0.00 6.66 35.96 19.04 14.10 12.06 27.53 27.29 26.14 11.12 7.29 16.65 6 I1_AR4 ActiveIntronRegion 0 8.94 3.90 12.07 3.06 1.90 1.05 5.02 7.50 3.49 7.18 1.64 0.18 6.33 2.45 8.95 13.37 5.75 16.21 4.94 14.20 15.21 0.89 28.78 7 I1_SR3 SilentIntronRegion 0 21.22 9.29 15.19 10.30 10.79 4.32 18.71 15.24 11.95 7.03 2.74 8.77 11.17 1.16 7.84 9.70 8.97 8.68 9.92 18.51 10.21 4.62 23.87 8 I1_AR5 ActiveIntronRegion 0 14.33 4.70 10.79 10.01 6.76 4.09 14.76 12.14 11.25 6.48 1.85 7.57 10.31 2.05 8.10 9.62 8.31 14.52 12.16 18.26 16.18 3.35 25.33 9 I1_AR6 ActiveIntronRegion 0 16.06 4.55 7.57 7.05 0.00 1.83 19.16 13.01 6.32 7.89 1.93 0.00 4.69 0.00 7.00 1.75 0.58 9.46 9.56 14.52 28.65 0.98 13.82 10 I1_AR11 ActiveIntronRegion 0 7.21 1.47 15.77 4.65 2.80 2.13 7.63 9.01 8.71 4.18 2.89 2.50 3.73 0.51 5.32 6.91 12.73 12.94 3.70 19.61 17.39 2.34 22.04 11 E2_Aa NovelBoundary 0 13.63 8.35 3.43 1.83 0.00 0.00 0.00 2.55 1.13 1.67 0.00 0.00 6.49 2.47 0.00 3.33 7.57 4.97 0.00 5.82 5.68 0.00 8.37 12 ER2a ExonRegion 0 15.47 12.36 20.95 8.66 10.02 7.50 21.46 17.63 20.17 22.65 76.34 60.46 46.41 75.96 41.13 52.85 68.58 78.22 57.57 84.87 76.91 46.09 80.78 13 E2a_E3a KnownJunction 0 24.30 21.05 38.91 13.98 11.12 8.35 14.31 30.85 20.57 33.66 114.56 99.18 64.77 145.98 95.43 72.72 111.36 108.98 85.93 156.09 149.62 97.42 92.79 14 E3_Aa NovelBoundary 0 33.71 19.01 1.80 12.32 0.00 0.00 6.23 0.00 3.44 5.94 0.00 5.70 6.82 0.00 0.00 3.16 0.00 0.00 13.84 9.01 0.00 0.00 12.89 15 ER3a ExonRegion 0 20.52 23.16 29.67 18.18 11.19 11.75 23.55 22.43 28.75 27.15 114.44 128.88 75.66 108.53 61.96 83.02 114.82 110.85 83.06 142.68 126.83 89.42 82.74 16 E3a_E4a KnownJunction 0 10.52 11.77 16.65 10.35 19.35 8.23 22.43 17.25 27.29 24.04 96.87 149.45 76.13 118.72 58.22 54.52 113.60 127.68 62.12 151.93 128.00 51.86 86.30 17 ER4a ExonRegion 0 10.18 18.75 19.48 10.90 15.41 11.46 28.01 16.92 22.67 28.91 97.59 82.05 43.81 128.89 60.43 84.92 101.08 130.75 68.22 145.87 99.69 87.34 86.18 18 E4a_E5a KnownJunction 0 7.56 5.33 23.89 7.52 33.28 5.39 31.71 17.87 29.75 34.73 70.02 55.67 46.43 150.69 31.15 85.02 91.07 144.84 56.10 161.45 81.30 107.95 97.91 19 ER5a ExonRegion 0 20.47 22.86 14.74 6.95 13.36 18.93 28.41 17.80 22.48 24.22 111.11 36.85 61.31 116.13 51.16 64.28 93.58 106.58 68.64 124.32 96.98 93.35 117.17 20 E5a_E6a KnownJunction 0 43.64 28.55 27.79 8.36 19.61 32.88 70.66 33.89 34.14 25.22 92.71 113.89 133.11 177.47 53.90 90.75 105.66 82.08 61.46 156.98 73.27 131.96 163.64 21 ER6a ExonRegion 0 21.31 28.00 31.89 10.82 28.74 37.25 65.65 31.28 31.74 32.04 116.63 111.80 122.36 142.59 63.40 94.10 112.94 95.10 103.56 116.39 90.73 130.94 140.96 22 E6_Da NovelBoundary 0 3.41 3.22 11.95 1.76 20.03 0.00 5.87 11.99 3.91 0.00 2.68 6.15 6.82 0.00 9.64 4.36 3.65 10.65 24.00 5.82 6.30 8.94 3.93 23 E6a_E7a KnownJunction 0 13.85 8.75 37.64 15.72 22.07 35.95 57.10 45.39 36.81 41.26 166.31 91.53 174.01 144.04 51.30 90.32 163.63 142.43 186.17 137.17 110.58 158.23 182.25 24 E7_Aa NovelBoundary 0 14.45 3.16 5.29 1.90 0.00 0.00 8.79 2.18 3.18 2.55 0.00 6.15 0.00 0.00 4.45 0.00 9.07 13.89 3.48 20.13 14.95 9.37 16.30 25 ER7a ExonRegion 0 7.74 16.13 37.49 11.37 7.39 17.25 31.65 20.56 30.84 27.32 110.39 126.24 156.96 152.10 62.48 95.18 113.13 122.60 109.57 121.98 109.46 117.43 104.02 26 E7a_E8a KnownJunction 1 0.00 5.85 34.21 9.52 3.74 10.73 20.27 10.93 28.76 28.02 64.49 138.50 111.19 211.26 54.02 75.36 89.76 89.46 64.94 117.99 74.69 65.70 52.16 27 ER8a ExonRegion 0 21.78 23.41 31.03 10.88 19.11 21.27 36.13 24.49 34.91 35.07 128.41 127.89 151.41 150.56 57.55 110.31 140.53 137.12 113.79 128.54 125.64 119.20 126.04 28 E8a_E9a KnownJunction 0 37.56 48.28 50.41 15.95 37.69 28.11 63.68 30.72 49.45 49.08 122.77 141.35 238.78 179.18 137.59 83.48 150.26 173.23 103.91 155.25 110.83 137.53 163.56 29 ER9a ExonRegion 0 21.91 27.49 31.94 10.01 29.34 43.35 55.89 30.74 36.15 45.13 130.70 141.50 152.27 164.18 69.03 104.12 146.23 146.14 107.19 144.06 124.00 115.79 141.40 30 E9a_E10a KnownJunction 0 25.19 31.38 41.39 18.31 50.76 13.46 36.48 37.38 28.99 56.01 141.61 148.40 201.61 135.32 48.95 140.31 152.50 157.56 67.58 101.24 132.20 119.90 174.91 31 ER10a ExonRegion 0 11.24 18.47 39.44 13.84 21.08 14.42 23.91 25.72 24.64 49.61 139.83 146.99 162.55 133.49 76.07 93.08 126.21 152.13 86.55 133.35 114.54 145.80 136.90 32 E10_Da NovelBoundary 0 0.00 0.00 2.87 0.00 0.00 0.00 19.65 3.74 2.95 2.71 2.68 6.30 0.00 2.47 8.90 0.00 0.00 10.28 4.80 12.98 2.78 0.00 11.35 33 E10a_E11a KnownJunction 0 0.00 12.56 51.30 15.58 20.88 5.00 38.73 26.16 17.53 60.25 145.41 146.30 104.38 123.49 101.49 96.81 149.51 173.11 141.18 152.12 96.06 149.16 170.90 34 I10_SR1 SilentIntronRegion 0 11.42 6.14 5.83 4.82 11.20 1.82 9.88 3.22 2.14 3.46 0.50 2.77 2.61 0.35 2.80 3.72 4.56 8.09 4.26 7.89 7.03 2.25 9.12 35 I10_AR3 ActiveIntronRegion 0 13.75 3.40 4.14 3.80 5.54 2.35 9.78 5.58 0.91 3.37 1.33 0.70 2.06 0.64 4.03 4.39 12.02 9.22 8.47 9.64 12.58 3.28 7.52 36 ER11a ExonRegion 0 8.67 17.77 43.34 17.75 11.02 26.48 37.24 32.85 22.95 48.92 137.78 153.86 122.43 143.19 61.88 87.97 116.81 177.20 89.17 127.29 111.88 116.10 147.49 37 E11a_E12a KnownJunction 0 6.82 17.83 31.70 11.19 7.81 23.96 41.65 21.52 24.62 35.81 123.19 154.40 161.84 184.24 65.15 104.25 124.08 195.78 87.72 108.28 97.36 120.87 141.53 38 ER12a ExonRegion 0 14.28 18.02 28.55 15.58 8.39 13.51 25.41 21.54 24.70 25.28 117.68 100.28 95.35 146.63 55.75 87.96 116.41 175.83 74.26 121.10 136.67 90.95 106.29 39 E12a_E13a KnownJunction 0 17.34 15.33 33.35 14.52 0.00 21.75 12.81 18.28 21.82 19.56 105.08 67.37 106.16 151.39 64.78 134.75 101.73 151.30 62.78 149.37 116.02 74.22 115.15 40 I12_AR3 ActiveIntronRegion 0 5.71 0.66 10.08 6.54 12.78 3.96 11.13 10.06 4.80 4.68 7.67 5.45 10.86 5.68 10.53 23.94 5.93 32.95 10.88 22.02 18.72 11.31 25.04 41 ER13a ExonRegion 0 13.43 13.66 35.42 11.96 2.84 20.44 19.17 18.00 26.49 26.15 131.80 91.03 108.81 142.68 77.93 102.80 135.09 218.28 74.24 119.79 135.49 82.77 109.74 42 E13a_E14a KnownJunction 1 18.89 13.81 22.89 8.62 7.64 24.13 15.85 5.42 25.32 28.21 60.33 118.99 132.46 140.62 66.01 92.63 103.97 204.57 45.18 75.23 88.77 64.30 127.79 43 ER14a ExonRegion 0 19.23 10.21 30.18 11.89 10.03 16.22 18.54 8.87 33.62 28.69 108.69 65.80 92.77 155.54 93.54 100.73 123.55 147.41 57.83 113.63 110.33 89.06 128.63 44 E14a_E15a KnownJunction 0 10.30 24.21 27.05 8.82 0.00 18.34 12.81 9.16 37.50 26.89 122.35 61.82 66.23 99.48 56.74 75.79 162.88 96.88 38.31 95.49 92.05 55.72 73.84 45 I14_AR1 ActiveIntronRegion 0 4.45 5.52 7.84 6.06 11.36 0.00 11.36 5.47 2.79 4.15 3.35 5.21 7.94 7.95 8.88 7.98 13.78 13.76 10.04 15.13 19.79 11.44 33.89 46 E15_Aa NovelBoundary 0 9.48 0.00 8.81 16.68 16.04 10.05 17.89 3.86 3.30 6.02 2.11 0.00 0.00 0.00 0.00 0.00 27.02 11.98 13.27 11.19 29.10 20.51 25.44 47 ER15a ExonRegion 0 25.66 22.14 43.10 12.70 7.63 26.91 33.95 25.29 33.12 32.45 120.29 87.46 132.74 153.70 89.24 127.21 128.53 188.15 92.31 127.06 137.42 104.58 125.70 48 E15a_E16a KnownJunction 0 28.23 25.00 81.99 18.81 0.00 28.73 25.04 48.88 35.04 42.04 184.26 171.21 154.70 240.39 117.07 200.12 167.84 252.00 156.05 196.42 191.82 212.36 232.02 49 ER16a ExonRegion 0 30.15 12.10 62.22 11.99 7.04 19.61 20.02 40.51 41.91 49.19 185.31 79.82 209.00 179.54 84.37 123.90 170.33 185.76 118.35 152.17 201.93 123.33 141.79 50 E16a_E17a KnownJunction 0 22.82 14.14 82.49 10.59 19.69 18.63 19.65 63.79 39.61 81.34 173.89 97.08 218.17 191.18 50.68 163.63 191.96 278.82 176.57 170.28 178.29 90.50 151.01 51 E17_Aa NovelBoundary 0 0.00 11.97 23.71 9.39 8.32 2.90 10.91 9.12 4.14 3.06 5.37 0.00 6.82 0.00 4.45 15.64 9.54 47.01 28.71 27.68 5.68 3.06 7.34 52 ER17a ExonRegion 0 32.27 31.28 45.84 12.43 22.25 27.08 34.06 37.86 48.25 54.86 212.92 120.80 253.40 199.40 94.29 188.09 192.84 233.03 167.64 186.42 210.19 162.11 230.04 53 E17_Da NovelBoundary 0 0.00 0.00 18.57 2.96 4.33 4.88 8.57 2.05 7.41 4.43 0.00 0.00 0.00 2.47 0.00 0.00 9.16 16.66 3.76 5.69 5.37 0.00 8.11 54 E17a_E18a KnownJunction 0 31.34 5.85 22.97 8.72 8.57 13.23 17.53 23.66 42.68 44.03 154.41 84.03 200.80 165.76 105.32 104.67 133.43 153.83 144.57 143.49 123.37 104.77 138.20 55 I17_SR2 SilentIntronRegion 0 17.44 11.39 2.67 3.00 10.40 15.15 14.09 2.10 2.67 1.02 1.86 2.82 7.99 2.60 3.65 8.58 2.38 6.87 10.73 11.44 8.89 12.18 18.13 56 I17_AR5 ActiveIntronRegion 0 10.49 5.45 1.99 3.30 5.83 19.36 11.08 3.82 5.17 3.42 1.10 5.48 8.39 0.63 3.48 3.34 5.61 2.57 1.81 14.04 17.75 12.62 23.85 57 E18_Aa NovelBoundary 0 17.26 0.00 8.93 9.69 12.39 0.00 6.76 1.52 8.28 2.85 2.32 12.60 12.66 2.12 0.00 8.72 18.05 14.80 17.79 21.22 23.48 9.19 38.16 58 ER18a ExonRegion 0 24.19 27.55 39.78 20.08 16.27 29.25 39.50 41.98 39.32 29.71 149.06 93.65 185.14 171.99 98.31 123.71 138.19 209.55 112.78 168.16 158.13 112.40 158.77 59 E18a_E19a KnownJunction 0 43.34 19.34 47.16 18.41 38.62 42.99 17.36 61.82 45.25 27.24 186.21 112.24 168.01 225.15 177.76 125.52 169.33 254.65 191.82 229.78 147.71 129.45 151.35 60 ER19a ExonRegion 0 24.53 37.71 27.81 21.78 36.45 46.26 52.68 38.77 38.47 41.40 120.00 161.74 227.79 129.27 54.23 92.00 111.12 109.52 93.41 138.04 84.41 128.99 128.86 61 IG5 Intergenic 0 4.66 30.82 9.70 10.85 15.16 25.42 28.34 15.43 20.92 26.12 60.40 83.21 61.10 75.76 11.51 53.41 61.88 87.27 51.16 102.86 78.03 70.71 84.91 62 IG5_AR4 ActiveIntergenicRegion 0 0.00 1.69 3.06 0.00 5.13 0.76 5.30 3.02 2.98 5.35 10.47 55.56 32.05 17.46 1.93 15.60 13.20 4.77 15.13 20.21 13.22 20.49 14.44 63 IG5_AR3 ActiveIntergenicRegion 0 0.00 11.52 6.13 3.86 10.70 6.11 17.87 12.39 16.26 13.57 34.47 128.44 68.01 36.27 14.51 27.74 38.51 24.64 53.62 59.57 34.89 57.99 38.18 64 IG5_SR3 SilentIntergenicRegion 0 7.68 21.74 13.19 15.36 15.89 29.19 40.21 20.15 26.60 22.78 72.33 155.83 113.73 92.89 16.19 67.67 74.35 106.30 81.47 135.99 87.79 82.02 103.90 65 IG5_AR2 ActiveIntergenicRegion 0 5.52 16.66 14.60 13.82 11.07 28.40 25.83 17.82 25.93 28.89 60.92 50.96 47.17 94.84 11.69 67.33 84.29 129.26 59.83 110.95 107.06 67.83 106.16 66 IG5_SR2 SilentIntergenicRegion 0 1.95 16.17 4.64 5.91 10.28 19.62 17.67 8.18 14.41 18.26 47.62 52.93 40.70 50.68 9.89 33.30 42.49 43.27 35.44 69.82 46.46 50.60 58.25 67 IG5_AR1 ActiveIntergenicRegion 0 4.81 74.15 8.55 11.40 27.50 31.64 36.94 19.61 21.03 40.04 77.43 116.39 73.16 74.50 10.94 53.68 59.11 86.46 40.39 122.68 89.47 89.64 84.62 68 IG5_SR1 SilentIntergenicRegion 0 2.32 43.89 0.35 2.77 12.95 8.63 21.41 6.19 8.17 12.65 28.37 33.17 17.29 44.82 6.35 27.81 12.67 18.71 20.73 46.26 10.33 71.81 44.71