Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TSTA3 Gene 0 72.52 20.63 146.88 62.00 30.19 46.48 16.87 59.61 53.62 66.81 168.90 29.02 25.39 148.87 197.69 124.47 126.81 62.28 67.59 67.57 112.50 65.39 73.01 2 425753 Transcript 1 102.73 36.25 95.50 39.71 35.82 66.51 14.66 42.10 41.92 72.40 305.32 21.98 14.16 78.11 246.93 189.72 298.58 16.58 86.71 82.46 100.42 46.10 118.32 3 433984 Transcript 0 8.89 1.38 11.78 4.91 0.74 8.37 1.06 10.04 5.87 3.47 8.35 0.77 1.09 7.72 22.47 5.15 8.22 4.97 3.15 9.39 6.22 1.23 1.89 4 360125 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 ER1a ExonRegion 0 29.20 23.95 24.53 7.83 11.02 67.26 6.22 4.60 6.72 15.73 13.69 0.00 0.08 6.72 24.98 17.48 15.39 2.19 31.58 19.18 46.28 16.63 56.09 6 E1_Ab NovelBoundary 0 150.99 88.41 100.23 42.29 26.66 118.74 23.05 28.01 38.34 59.93 45.17 0.00 0.00 11.01 73.55 88.95 40.58 39.05 105.32 62.06 110.64 55.05 227.41 7 E1a_E1c KnownJunction 1 176.25 48.54 166.46 71.59 60.61 65.76 23.10 79.60 77.11 129.07 596.94 43.96 28.24 149.51 468.88 361.96 581.77 30.97 141.84 145.73 154.57 75.56 180.54 8 ER1b ExonRegion 1 73.09 33.22 108.49 44.16 24.08 55.14 13.99 44.19 48.17 82.81 240.39 17.03 12.19 64.91 245.83 143.36 222.92 14.35 57.12 86.67 87.41 47.50 104.94 9 ER1c ExonRegion 0 4.31 0.62 3.47 2.22 0.79 1.14 0.15 2.76 6.67 2.54 1.82 0.05 0.02 5.37 10.25 3.13 2.58 3.81 1.97 2.80 2.40 0.87 1.97 10 E1_Ac KnownBoundary 0 16.60 2.96 5.12 3.36 0.00 5.56 3.97 6.33 18.17 5.61 0.00 0.00 0.00 2.47 23.36 7.43 0.00 12.19 17.98 5.88 14.27 3.12 3.50 11 ER1d ExonRegion 1 55.55 19.44 177.31 69.98 33.62 47.69 13.71 81.17 80.19 104.64 522.87 28.22 26.76 104.24 173.72 178.29 400.85 93.32 106.08 87.60 223.28 69.77 137.85 12 E1_Db NovelBoundary 0 0.00 0.00 31.81 20.71 4.33 5.68 0.00 7.02 4.25 5.67 11.11 6.30 0.00 11.95 22.75 16.58 16.74 16.08 44.33 12.66 17.05 19.66 15.71 13 E1b_E2a KnownJunction 1 50.08 25.52 321.96 142.61 34.30 44.07 3.80 150.00 112.79 169.53 1012.15 68.72 82.46 289.25 528.34 666.92 928.19 229.36 422.32 206.52 315.99 179.60 575.43 14 I1 Intron 0 6.24 3.60 18.84 7.78 5.92 5.95 3.51 4.94 2.98 3.53 4.27 1.69 3.99 4.77 11.27 10.51 2.43 7.04 15.96 7.21 10.71 6.76 2.16 15 I1_AR1 ActiveIntronRegion 0 6.28 3.62 18.95 7.82 5.95 5.98 3.53 4.96 3.00 3.55 4.29 1.70 4.01 4.80 11.34 10.58 2.45 7.08 16.06 7.26 10.77 6.80 2.18 16 E2_Aa NovelBoundary 0 42.90 11.84 27.14 16.91 3.48 2.90 9.05 9.82 3.50 9.27 15.06 5.85 5.68 12.13 11.50 4.27 0.00 2.36 27.77 12.02 12.29 8.21 4.10 17 ER2a ExonRegion 0 26.52 21.89 304.23 135.34 68.55 101.96 17.90 133.18 120.73 137.53 339.00 57.83 68.23 313.00 494.05 472.67 243.03 172.55 218.54 164.25 188.20 147.17 278.27 18 E2a_E3a KnownJunction 0 51.56 44.60 331.45 133.05 213.75 231.51 72.43 117.35 108.71 120.07 354.46 62.72 53.41 350.23 313.62 230.88 240.77 95.30 114.54 170.28 208.75 102.20 104.66 19 E3_Aa NovelBoundary 0 6.08 0.00 15.82 8.96 3.99 13.12 1.94 4.68 4.60 1.18 7.42 12.75 0.00 6.95 34.49 4.19 8.32 19.77 0.00 6.14 5.13 5.27 0.00 20 ER3a ExonRegion 0 178.41 59.84 307.28 131.43 66.38 124.71 47.80 113.30 100.70 131.72 281.15 81.59 67.55 287.10 389.02 206.14 214.25 112.51 127.41 144.76 204.18 121.12 103.58 21 E3_Da KnownBoundary 0 3.48 3.29 17.59 0.00 0.00 12.95 0.00 4.44 9.81 4.19 2.68 0.00 0.00 4.53 10.38 0.00 0.00 1.95 4.33 12.34 6.05 0.00 4.10 22 E3a_E3b KnownJunction 0 383.10 80.78 383.37 172.74 81.58 74.62 51.23 125.15 96.96 150.61 325.98 83.13 129.70 429.22 599.42 234.21 246.38 141.15 164.71 143.05 262.18 116.40 148.45 23 E3a_E4a NovelJunction 0 16.45 0.00 14.34 0.00 4.07 0.00 2.25 5.83 11.89 9.37 7.63 0.00 0.00 0.00 0.00 0.00 8.23 1.95 0.00 2.68 0.00 7.78 0.00 24 ER3b ExonRegion 0 8.89 1.38 11.78 4.91 0.74 8.37 1.06 10.04 5.87 3.47 8.35 0.77 1.09 7.72 22.47 5.15 8.22 4.97 3.15 9.39 6.22 1.23 1.89 25 E3_Ab KnownBoundary 0 0.00 0.00 7.13 1.50 4.16 2.44 4.24 13.68 4.48 4.30 7.95 0.00 0.00 7.53 13.47 8.12 0.00 11.28 4.80 11.89 3.15 0.00 0.00 26 ER3c ExonRegion 0 219.78 40.35 291.23 123.11 66.33 73.48 27.94 115.53 88.45 116.94 292.95 80.44 98.90 358.62 383.63 234.54 252.66 115.47 117.47 142.59 228.61 97.78 99.43 27 E3_Db NovelBoundary 0 209.15 11.45 197.36 80.88 49.83 40.60 17.71 84.37 55.87 89.05 136.35 89.88 69.31 224.15 199.64 145.60 147.83 68.81 74.73 81.43 108.48 59.83 81.86 28 E3_Dc NovelBoundary 0 30.97 6.71 28.38 20.54 7.98 33.56 6.76 21.93 13.22 15.79 19.48 12.60 0.00 42.79 32.26 33.07 31.32 19.23 4.80 17.39 21.00 19.41 16.73 29 E3c_E4a KnownJunction 1 164.25 47.29 246.18 91.26 43.55 56.44 27.29 110.65 64.55 99.50 208.68 49.52 6.82 311.44 322.15 245.41 158.58 99.41 139.49 107.89 167.05 122.59 87.24 30 ER3d ExonRegion 0 159.40 31.65 242.16 92.17 49.84 53.64 23.75 109.11 70.79 97.13 220.35 75.77 50.12 347.76 328.57 237.96 169.38 93.77 117.26 108.64 174.23 115.24 89.02 31 I3 Intron 0 24.13 4.88 12.05 6.70 4.01 6.60 5.56 6.95 8.83 6.67 15.09 3.21 4.63 31.56 35.17 12.48 9.90 6.60 8.60 12.13 9.92 5.63 9.69 32 I3_AR1 ActiveIntronRegion 0 24.40 4.94 12.20 6.78 4.06 6.68 5.63 7.04 8.94 6.74 15.27 3.25 4.69 31.93 35.59 12.63 10.02 6.68 8.70 12.27 10.03 5.69 9.81 33 E4_Aa NovelBoundary 0 43.34 6.64 53.34 40.59 3.82 13.69 8.26 23.21 25.84 28.69 39.27 5.55 0.00 62.86 85.91 33.32 18.23 33.99 35.95 30.81 12.17 11.88 16.05 34 ER4a ExonRegion 0 123.06 38.47 278.31 95.88 71.57 86.17 34.99 82.81 83.81 107.17 271.41 64.26 49.46 331.43 355.04 194.12 178.77 110.27 118.55 106.33 204.60 114.22 103.66 35 E4a_E5a KnownJunction 0 115.06 34.14 265.34 102.82 56.45 85.12 42.18 104.16 84.52 119.78 207.42 62.87 31.17 247.28 319.30 169.78 142.68 127.18 80.66 118.76 148.95 99.93 128.13 36 ER5a ExonRegion 0 117.22 34.66 244.57 98.61 46.72 75.02 29.23 89.40 81.33 111.88 285.71 75.80 50.08 330.47 360.38 220.81 186.27 95.46 111.73 115.81 197.72 124.40 108.57 37 E5a_E6a KnownJunction 0 215.89 44.93 313.29 142.17 78.52 94.95 40.98 112.26 114.12 133.85 280.02 50.57 34.41 393.73 337.48 253.78 216.08 177.67 191.82 148.42 200.41 182.11 107.30 38 ER6a ExonRegion 0 213.48 45.77 303.62 141.58 61.62 90.21 47.13 93.80 100.63 135.90 304.04 40.45 42.56 398.13 375.91 240.70 237.62 152.70 177.43 117.02 223.86 145.38 119.61 39 E6a_E7a KnownJunction 0 392.07 66.70 368.70 158.35 75.89 111.98 44.78 106.42 106.34 142.91 346.61 50.42 55.84 394.79 426.23 258.14 225.15 151.93 149.75 122.08 279.11 164.23 107.30 40 ER7a ExonRegion 0 134.90 33.35 331.03 131.54 34.22 84.45 31.21 123.84 112.36 135.09 239.34 34.04 30.02 284.28 374.55 166.51 163.52 86.59 78.52 131.54 170.35 111.13 90.23 41 E7a_E8a KnownJunction 0 161.88 49.40 376.07 135.11 59.17 118.74 43.19 163.56 133.25 152.01 240.80 68.27 26.62 357.59 436.12 192.43 187.84 73.83 111.53 113.45 199.36 139.24 134.28 42 I7_AR1 ActiveIntronRegion 0 14.82 0.00 2.45 0.00 0.00 5.50 1.32 0.00 0.00 2.29 5.48 0.00 0.00 13.26 14.99 2.97 7.70 1.85 0.00 4.26 0.00 0.00 8.81 43 ER8a ExonRegion 0 109.11 45.06 335.10 135.05 53.01 80.39 36.45 138.21 127.04 148.86 265.02 51.65 34.66 294.32 364.46 202.07 188.81 87.25 104.80 141.15 195.84 116.30 136.94 44 E8_Da NovelBoundary 0 13.04 3.29 34.48 3.80 4.33 10.62 0.00 6.33 6.08 12.89 15.27 0.00 6.82 26.72 46.85 28.97 4.21 20.48 23.06 2.75 24.65 9.86 8.28 45 E8a_E9a KnownJunction 0 116.02 39.53 335.14 139.94 41.77 83.53 48.36 156.20 114.26 127.92 270.23 55.22 70.94 271.88 317.45 157.65 165.50 88.25 62.59 181.21 164.33 125.65 89.97 46 I8_SR1 SilentIntronRegion 0 21.13 3.29 14.95 5.95 2.17 10.12 1.67 3.76 7.95 9.99 9.31 2.76 0.00 20.83 24.74 17.05 6.44 11.76 10.79 8.05 8.60 10.00 9.64 47 ER9a ExonRegion 0 119.11 24.71 166.76 79.34 38.01 49.80 22.56 82.03 57.23 78.67 180.83 33.44 27.33 172.33 264.18 141.79 141.27 83.59 70.87 75.91 150.40 103.42 81.80