Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZFAT Gene 0 9.48 6.91 6.97 8.76 7.62 8.74 5.19 9.07 10.10 13.11 89.85 76.06 42.48 100.40 97.78 76.49 51.59 18.93 8.67 10.77 24.11 15.20 17.10 2 377838 Transcript 0 1.39 1.87 0.72 2.85 4.57 9.64 6.78 5.51 3.53 7.30 18.21 7.29 0.00 20.42 10.95 31.01 26.53 5.23 11.78 5.44 36.63 8.95 11.33 3 429442 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 398946 Transcript 1 0.60 0.61 0.32 0.27 0.28 0.49 0.84 1.92 0.68 0.94 1.94 17.80 7.36 0.96 2.50 2.62 3.55 2.15 1.28 2.44 0.81 0.72 0.68 5 318135 Transcript 0 0.00 0.00 0.10 0.23 0.22 0.00 0.11 0.58 0.41 1.15 1.93 0.72 0.00 2.57 0.97 3.22 3.58 1.39 0.80 0.71 5.33 0.87 1.47 6 IG41_SR8 SilentIntergenicRegion 0 1.79 4.10 3.39 5.52 6.52 4.16 9.17 3.48 4.25 3.47 8.18 56.52 11.89 48.16 3.02 11.70 8.88 2.21 1.01 7.14 0.99 14.04 4.57 7 IG41_AR11 ActiveIntergenicRegion 0 1.14 6.41 1.84 3.15 8.46 3.37 9.03 1.34 3.52 1.28 8.04 50.47 15.79 35.59 1.81 8.86 6.16 0.74 1.64 4.12 0.56 6.71 4.32 8 IG41_AR10 ActiveIntergenicRegion 0 1.55 4.56 0.00 3.66 1.83 2.19 10.01 2.15 5.33 1.15 6.93 18.48 7.89 39.49 2.55 7.47 8.45 2.79 0.00 1.04 2.42 11.33 2.29 9 IG41_SR7 SilentIntergenicRegion 0 1.88 4.44 1.45 5.30 4.16 2.72 5.22 4.29 5.19 2.34 7.30 67.43 9.55 42.23 2.63 9.96 13.63 0.21 2.48 3.51 1.22 10.96 3.81 10 IG41_AR9 ActiveIntergenicRegion 0 1.19 2.35 3.40 5.93 6.03 7.69 8.83 5.04 7.59 7.74 7.14 44.67 10.32 40.57 2.78 9.09 12.91 1.00 1.48 5.45 1.19 22.36 2.38 11 IG41_AR8 ActiveIntergenicRegion 0 2.12 0.89 2.83 4.09 4.52 3.67 7.28 5.19 14.05 6.02 1.93 78.47 10.26 47.91 2.72 1.30 3.30 0.00 3.19 5.45 0.00 14.85 0.00 12 IG41_SR6 SilentIntergenicRegion 0 1.89 0.28 0.50 2.30 3.58 3.55 6.80 2.55 3.56 2.11 15.16 65.97 9.44 44.82 2.05 8.45 11.59 2.32 2.06 5.01 1.04 12.59 7.42 13 IG41_AR6 ActiveIntergenicRegion 0 17.54 8.13 9.53 35.75 23.48 14.84 27.95 11.18 12.47 10.75 14.51 68.79 15.79 65.17 13.50 21.30 17.06 5.16 6.68 13.07 1.93 26.51 8.16 14 IG41_AR4 ActiveIntergenicRegion 0 19.07 16.66 18.21 51.56 24.31 11.04 20.10 11.22 12.33 10.97 7.86 44.44 10.09 43.94 25.02 15.84 10.74 2.03 2.14 11.80 1.52 17.22 6.90 15 IG41_SR3 SilentIntergenicRegion 0 3.01 1.53 0.62 2.22 3.98 5.60 4.29 1.84 3.75 1.29 0.87 6.83 3.08 17.86 4.73 2.24 2.39 1.09 1.12 2.02 0.33 2.81 2.21 16 IG41_AR3 ActiveIntergenicRegion 0 3.08 2.69 1.45 4.85 7.47 10.42 3.15 1.38 7.31 4.74 0.51 13.80 2.92 9.34 5.10 0.79 0.87 0.61 1.68 1.12 0.29 5.78 2.33 17 ER1a ExonRegion 1 2.77 3.74 1.44 2.54 9.13 19.28 11.32 3.01 2.37 3.84 11.83 1.23 0.00 21.47 2.99 16.06 14.26 2.92 5.76 4.80 30.19 7.13 11.31 18 E1a_E4b KnownJunction 0 0.00 0.00 0.00 3.16 0.00 0.00 2.25 8.01 4.69 10.77 24.59 13.35 0.00 19.37 18.91 45.97 38.80 7.54 17.79 6.07 43.06 10.78 11.35 19 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER2b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.77 0.06 0.00 0.00 0.00 0.03 1.74 0.00 1.40 0.00 0.00 0.00 0.07 0.14 0.00 21 E2a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER4a ExonRegion 0 0.00 0.00 0.20 0.45 0.45 0.00 0.22 1.15 0.82 2.29 3.87 1.44 0.00 5.14 1.93 6.44 7.15 2.77 1.59 1.42 10.65 1.74 2.94 24 ER4b ExonRegion 1 3.37 0.83 5.03 4.75 15.86 21.30 9.67 7.29 9.07 15.13 20.68 27.28 8.58 40.26 11.44 27.46 27.29 27.42 17.43 13.48 30.56 16.21 30.25 25 E4a_E5a KnownJunction 0 3.78 9.47 2.90 8.89 4.33 30.38 18.55 10.19 14.32 11.20 17.37 25.51 12.82 33.90 17.68 19.40 22.25 17.37 20.14 9.20 50.84 15.92 7.85 26 ER5a ExonRegion 1 3.68 11.27 5.28 9.56 2.65 10.31 5.30 9.31 9.56 10.87 31.71 25.91 11.09 42.62 15.95 33.90 36.60 24.28 15.05 20.52 40.25 13.84 24.61 27 E5a_E6a KnownJunction 0 6.59 16.31 2.25 16.65 4.33 15.90 3.89 15.44 8.48 11.20 39.59 0.00 13.47 41.62 17.80 54.86 32.07 21.22 23.53 19.94 15.75 10.96 21.94 28 E5a_E7a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.21 0.00 1.07 0.00 2.00 0.00 0.00 0.00 8.90 0.00 0.00 2.24 4.71 0.00 8.40 0.00 0.00 29 ER6a ExonRegion 1 7.52 7.05 6.74 11.88 7.08 17.18 7.17 16.02 12.28 20.02 36.77 37.89 17.73 60.72 21.53 40.14 49.23 27.61 15.79 22.03 45.02 18.75 33.08 30 E6a_E7a KnownJunction 1 0.00 6.05 15.52 10.35 3.90 26.06 3.97 16.14 8.91 25.52 40.75 12.90 13.64 84.23 9.64 57.76 48.06 35.57 16.28 18.02 62.21 25.47 27.91 31 ER7a ExonRegion 1 4.19 16.47 6.37 8.85 6.49 21.64 8.14 6.10 10.78 20.90 31.99 50.46 27.27 67.27 26.51 45.63 47.31 43.60 13.40 21.42 51.87 27.47 27.85 32 E7a_E8a KnownJunction 1 9.48 3.35 10.23 4.99 13.67 39.30 9.14 6.12 3.88 20.76 31.43 23.56 34.41 72.87 9.89 44.60 58.25 53.85 38.40 32.92 56.16 17.21 22.79 33 ER8a ExonRegion 0 5.68 7.68 6.44 10.42 8.12 9.03 4.69 7.38 10.01 18.77 63.72 29.30 15.51 61.69 38.49 61.39 46.80 33.16 10.72 16.07 37.69 20.64 24.59 34 E8a_E9a KnownJunction 1 17.93 17.37 8.72 29.47 7.05 4.77 3.97 21.56 20.54 26.54 236.80 68.27 67.53 127.20 122.26 137.49 121.18 38.97 29.27 18.47 46.27 41.70 32.86 35 ER9a ExonRegion 0 28.68 12.52 10.60 19.89 14.78 16.83 11.73 12.80 19.24 28.36 286.42 268.87 129.25 165.58 145.14 203.13 123.49 18.73 19.82 24.48 54.32 37.38 41.72 36 E9_Da KnownBoundary 0 0.00 0.00 0.00 2.00 0.00 0.00 0.00 1.81 0.00 0.00 0.00 6.30 6.82 0.00 0.00 0.00 0.00 0.00 3.76 0.00 0.00 2.76 7.94 37 E9a_E10a KnownJunction 0 49.19 12.70 17.47 19.94 16.04 18.34 19.56 8.95 17.25 18.94 302.81 252.53 204.53 158.34 134.25 168.33 120.80 9.16 25.88 22.56 43.86 42.50 24.76 38 E9a_E14a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER9b ExonRegion 1 0.60 0.61 0.32 0.27 0.28 0.49 0.84 1.92 0.68 0.94 1.94 17.80 7.36 0.96 2.50 2.62 3.55 2.15 1.28 2.44 0.81 0.72 0.68 40 E9_Db NovelBoundary 0 0.00 0.00 3.67 1.76 0.00 2.90 3.93 0.00 1.39 0.00 2.63 6.15 19.64 0.00 5.19 0.00 3.46 2.57 0.00 0.00 0.00 0.00 8.71 41 I9_AR1 ActiveIntronRegion 0 0.00 0.00 0.00 0.91 0.00 0.00 0.00 1.73 1.24 0.00 5.80 17.68 3.13 0.00 0.00 0.00 3.30 0.00 0.00 2.13 0.00 2.08 4.16 42 ER10a ExonRegion 0 29.85 25.88 13.76 16.56 40.50 26.65 17.38 11.25 17.71 22.03 280.84 372.14 191.07 174.61 168.21 165.19 144.90 25.89 23.93 21.76 38.11 41.53 12.38 43 E10a_E11a KnownJunction 0 21.34 42.36 6.15 19.01 36.25 17.21 12.54 18.69 21.15 14.26 295.23 433.34 248.20 191.89 226.22 222.76 149.70 32.58 30.59 21.60 54.67 52.78 38.50 44 E11_Aa NovelBoundary 0 0.00 6.58 0.00 1.76 0.00 0.00 0.00 0.00 1.10 0.00 0.00 20.26 0.00 0.00 0.00 4.02 0.00 4.31 0.00 0.00 0.00 0.00 12.46 45 ER11a ExonRegion 0 24.76 28.61 14.37 26.12 22.46 11.90 15.00 19.73 15.19 25.32 328.91 396.49 215.46 223.53 193.15 252.47 162.27 36.79 21.75 23.67 59.25 40.91 33.22 46 E11a_E12a KnownJunction 0 25.19 28.09 20.37 20.54 8.49 36.17 17.05 26.04 19.85 18.02 266.70 363.27 135.71 144.39 217.57 201.91 115.94 25.87 9.04 23.27 38.43 48.74 17.50 47 ER12a ExonRegion 0 39.16 22.36 23.90 31.57 31.97 34.18 19.68 24.98 18.92 25.75 353.54 378.16 194.10 224.04 265.90 255.74 153.95 42.51 26.22 25.85 46.99 39.72 32.17 48 E12a_E13a KnownJunction 0 42.82 28.55 18.89 27.84 21.31 5.34 14.40 32.90 9.03 24.15 340.45 371.97 177.42 202.54 270.85 221.48 128.56 40.58 8.38 29.40 36.57 22.41 16.73 49 I12_AR1 ActiveIntronRegion 0 2.12 1.05 1.87 4.10 3.19 0.00 4.34 3.42 2.52 4.34 3.07 19.64 16.39 1.67 8.63 13.09 6.30 0.72 0.00 0.00 0.00 0.80 1.52 50 I12_AR4 ActiveIntronRegion 0 3.93 0.42 1.27 1.84 1.64 0.38 0.54 0.08 3.30 1.78 1.58 9.77 2.49 57.95 29.21 28.42 10.84 4.22 0.00 0.43 0.00 0.80 1.93 51 E13_Aa NovelBoundary 0 6.37 5.53 0.00 4.56 4.07 0.00 2.25 0.00 0.00 2.34 7.37 0.00 6.49 62.39 19.90 16.06 8.42 1.70 0.00 0.00 0.00 0.00 4.35 52 ER13a ExonRegion 0 30.34 23.69 13.38 22.54 17.65 15.12 14.04 18.92 16.14 24.28 263.72 281.95 130.16 262.87 304.34 212.39 128.66 45.90 17.61 19.53 35.95 39.03 24.48 53 E13a_E14a KnownJunction 0 24.30 23.61 13.31 24.34 27.25 13.80 21.15 7.93 19.42 13.59 276.60 271.29 77.75 337.10 304.72 281.72 172.14 44.52 22.97 20.45 20.82 57.99 28.00 54 E13a_E15a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.30 6.33 9.83 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 55 I13_AR2 ActiveIntronRegion 0 3.32 2.68 2.45 3.58 1.76 0.00 2.02 3.80 1.09 3.84 11.11 26.98 5.78 9.15 20.76 14.38 10.39 3.46 1.05 1.41 3.43 0.62 7.71 56 I13_SR2 SilentIntronRegion 0 1.29 0.67 1.23 1.20 0.50 0.23 1.12 1.49 1.67 1.38 5.17 29.40 10.38 3.45 8.49 6.92 2.09 0.72 0.61 0.51 0.56 0.00 2.76 57 I13_AR3 ActiveIntronRegion 1 2.12 6.10 1.23 1.36 1.00 0.00 1.32 6.91 1.85 2.29 7.73 107.15 21.69 6.50 2.90 11.52 3.71 0.00 0.00 1.86 0.00 0.00 5.87 58 I13_AR4 ActiveIntronRegion 1 1.20 1.23 0.21 2.57 0.00 1.88 1.56 2.62 1.80 1.70 4.72 45.16 12.94 4.21 3.49 9.59 4.26 1.44 0.09 2.13 0.28 0.27 0.66 59 I13_AR5 ActiveIntronRegion 0 5.87 1.85 0.91 2.76 0.91 0.00 1.22 0.00 2.46 1.25 6.72 34.68 9.38 10.08 8.77 18.58 12.68 0.90 3.26 1.47 0.00 0.00 0.10 60 ER14a ExonRegion 0 27.01 32.57 13.74 21.11 25.16 23.76 14.66 25.72 12.63 26.42 270.11 336.83 153.59 372.18 338.15 270.31 141.72 33.37 12.56 21.41 37.89 35.94 44.94 61 E14a_E15a KnownJunction 0 27.63 9.47 14.13 19.24 31.24 24.76 22.26 23.99 18.20 30.35 274.28 352.01 144.31 370.36 352.68 254.04 178.03 49.58 12.99 27.10 19.52 32.45 56.85 62 ER15a ExonRegion 0 21.65 14.25 18.29 26.48 21.54 23.73 6.29 24.01 22.93 36.14 296.07 239.47 128.21 403.46 323.01 241.42 166.40 37.55 19.97 19.06 51.00 35.77 26.31 63 E15a_E16a KnownJunction 0 28.15 20.33 26.58 21.91 15.96 10.39 10.42 29.53 20.40 32.61 278.07 184.41 114.28 341.58 325.11 231.48 149.70 39.34 7.34 14.96 53.81 43.90 19.55 64 ER16a ExonRegion 0 13.50 17.52 17.65 18.57 18.86 15.22 11.84 22.37 15.45 26.51 218.20 175.50 102.55 359.74 339.93 196.14 134.74 29.32 9.71 10.32 33.49 20.31 36.30 65 E16a_E17a KnownJunction 0 5.78 15.92 15.20 24.04 8.32 17.09 1.68 5.91 9.29 19.53 144.40 121.54 93.01 276.77 270.23 144.83 76.39 10.20 3.76 20.39 19.83 16.84 19.97 66 ER17a ExonRegion 0 26.45 6.77 16.79 13.23 7.70 15.10 1.91 14.34 13.29 19.55 156.61 80.87 63.30 286.12 299.38 130.16 96.46 20.04 4.30 14.52 22.90 21.84 21.57 67 E17a_E18a KnownJunction 1 39.12 6.18 16.14 18.68 4.33 2.38 3.62 12.53 12.90 16.90 193.36 49.22 52.92 288.78 350.08 158.33 103.23 8.95 4.33 12.34 30.39 16.66 27.40 68 I17 Intron 0 2.08 0.28 0.36 0.58 1.31 0.22 1.06 2.07 5.56 1.45 7.70 15.99 9.96 8.09 7.37 7.29 6.11 1.53 1.01 0.78 2.16 1.58 2.45 69 I17_AR1 ActiveIntronRegion 0 1.22 0.00 0.00 0.00 0.00 0.00 0.00 2.86 5.89 0.18 1.93 26.64 19.48 8.00 0.00 2.97 7.74 0.85 0.00 0.00 0.42 4.17 4.29 70 I17_AR2 ActiveIntronRegion 0 1.25 0.00 0.00 0.00 0.00 0.00 0.64 2.18 4.37 0.35 4.76 25.30 18.33 10.40 4.91 11.49 9.39 2.21 2.04 1.02 2.30 0.85 3.49 71 I17_AR3 ActiveIntronRegion 0 1.77 0.49 0.00 0.00 1.05 0.22 0.69 2.46 4.92 2.24 11.17 45.51 15.90 11.86 10.18 5.73 7.77 3.48 0.76 0.25 3.04 1.00 3.69 72 I17_AR4 ActiveIntronRegion 0 3.05 0.55 0.12 1.37 1.99 1.11 0.80 1.79 7.75 2.76 9.13 16.57 5.55 9.42 7.29 9.81 5.77 0.99 1.07 1.44 1.78 1.68 3.57 73 I17_AR5 ActiveIntronRegion 0 6.10 0.00 0.00 0.63 0.31 0.00 1.98 2.15 10.61 2.83 16.20 17.45 4.20 6.43 8.73 4.60 10.01 0.00 0.00 0.40 3.87 3.71 4.82 74 I17_AR6 ActiveIntronRegion 0 7.46 2.48 0.40 2.31 4.43 0.27 0.79 2.41 9.51 3.42 10.57 23.68 16.58 7.83 12.10 7.66 6.38 0.67 0.00 0.84 1.08 5.90 2.80 75 I17_SR5 SilentIntronRegion 0 9.36 1.28 2.02 1.66 2.69 0.49 1.54 5.70 11.64 2.57 12.89 18.06 13.25 13.48 18.66 13.31 6.27 2.73 0.80 0.60 3.26 3.22 4.45 76 E18_Aa NovelBoundary 0 20.30 0.00 1.54 7.49 0.00 0.00 0.00 2.51 5.21 13.08 15.42 0.00 0.00 4.83 33.01 4.10 0.00 5.89 0.00 0.00 8.15 2.33 0.00 77 ER18a ExonRegion 0 26.00 7.96 19.82 17.08 11.81 10.97 7.23 22.26 33.11 25.79 230.69 113.84 92.43 319.43 375.30 198.13 116.65 29.59 12.70 10.75 36.71 26.67 30.31 78 ER18b ExonRegion 0 0.00 2.03 0.00 1.36 0.00 0.00 0.00 0.00 1.24 1.15 10.63 2.16 0.00 3.25 10.15 4.46 1.65 0.00 0.00 0.00 0.00 0.00 0.00