Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC016057.1 Gene 0 2.83 0.14 3.11 2.64 3.57 16.22 2.78 3.36 4.24 1.03 25.35 24.23 19.23 39.62 17.87 33.13 36.25 0.00 0.21 0.00 25.51 36.16 53.32 2 457356 Transcript 0 4.33 0.04 4.27 2.61 5.23 24.90 2.23 4.24 4.42 1.40 33.54 22.61 20.39 39.10 16.24 35.90 39.17 0.00 0.29 0.00 41.22 37.88 81.23 3 ER1a ExonRegion 0 2.07 0.18 0.49 0.72 1.19 1.80 0.12 2.29 0.49 0.46 15.47 18.75 13.06 38.02 22.35 36.77 42.89 0.00 0.00 0.00 0.20 9.26 10.21 4 E1_Da NovelBoundary 1 35.71 0.00 15.67 10.52 38.20 68.94 17.18 24.77 13.28 20.95 263.22 126.34 195.12 550.77 781.63 406.82 1022.07 0.00 0.00 0.00 22.18 84.38 139.74 5 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 E2_Aa NovelBoundary 0 9.56 0.00 4.79 1.53 8.32 15.79 0.00 2.09 2.17 1.32 112.55 71.57 48.86 398.67 585.95 407.50 528.10 0.00 0.00 0.00 10.56 54.44 105.00 7 ER2a ExonRegion 0 0.03 0.00 1.02 2.67 0.06 14.22 1.04 1.41 2.66 0.30 13.51 7.48 5.49 15.65 9.20 17.54 13.17 0.00 0.00 0.00 22.28 19.95 36.86 8 E2_Da NovelBoundary 1 3.63 0.00 1.60 2.00 7.05 39.30 2.25 2.42 0.00 3.17 140.35 11.85 12.66 510.21 475.06 437.32 497.90 0.00 0.00 0.00 14.70 35.64 72.22 9 E2a_E3a KnownJunction 0 0.00 0.00 7.10 0.00 0.00 29.07 0.00 1.64 2.92 1.50 53.86 18.91 26.30 43.38 11.87 28.97 38.80 0.00 0.00 0.00 78.02 36.19 81.44 10 I2_AR1 ActiveIntronRegion 1 0.00 0.00 0.00 0.00 0.00 0.00 2.65 0.00 0.00 0.00 3.87 21.65 0.00 2.17 2.90 5.45 6.60 0.00 0.00 0.00 0.00 3.13 2.94 11 I2_AR1 ActiveIntronRegion 1 0.31 0.00 0.00 0.00 0.00 0.00 0.59 0.38 0.00 0.00 0.00 3.52 17.61 0.34 0.30 1.33 0.98 0.00 0.00 0.00 0.00 0.00 0.44 12 I2_AR3 ActiveIntronRegion 0 0.33 0.00 0.25 0.40 0.42 4.59 0.21 0.27 0.37 0.00 1.70 13.21 5.62 0.89 0.64 1.85 5.69 0.00 0.00 0.00 0.92 1.35 3.05 13 I2_AR4 ActiveIntronRegion 0 1.32 0.00 0.42 0.00 0.55 3.38 0.82 2.71 0.00 0.00 2.89 13.92 5.09 1.98 0.63 3.68 7.86 0.00 0.00 0.00 0.00 1.22 8.56 14 ER3a ExonRegion 0 2.81 0.00 7.86 4.08 6.35 42.89 5.06 7.86 6.71 1.31 62.76 32.47 29.78 62.45 23.79 45.48 66.20 0.00 1.29 0.00 75.17 58.62 132.50 15 E3a_E4a KnownJunction 0 3.48 0.00 6.59 5.06 12.48 34.47 3.97 5.75 6.54 4.38 64.60 24.61 26.78 52.80 18.54 74.08 63.96 0.00 0.00 0.00 60.67 55.48 108.16 16 E3a_E5a NovelJunction 0 0.00 0.00 1.83 0.00 4.24 29.53 0.00 1.85 1.71 0.00 17.06 5.55 7.95 17.72 0.00 7.78 8.42 0.00 0.00 0.00 33.24 32.58 59.92 17 ER4a ExonRegion 0 6.74 0.00 6.70 3.86 5.18 32.16 2.00 9.26 8.37 1.48 48.49 20.79 47.27 47.55 20.56 50.22 45.56 0.00 1.29 0.00 51.02 44.32 114.81 18 E4_Da NovelBoundary 0 3.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.21 6.90 13.64 0.00 11.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 11.35 19 E4a_E5a KnownJunction 1 20.08 0.00 3.87 2.93 15.28 46.79 1.77 7.23 4.66 1.42 17.21 44.86 12.99 49.09 25.84 42.38 54.14 0.00 0.00 0.00 47.01 52.05 173.80 20 I4_AR1 ActiveIntronRegion 0 0.93 0.00 0.65 0.90 3.04 7.56 2.77 0.00 1.10 0.20 7.51 17.59 30.27 7.43 7.54 11.90 11.78 0.00 0.75 0.00 1.56 3.44 13.72 21 I4_SR2 SilentIntronRegion 0 0.80 0.00 0.16 0.20 0.52 3.82 0.57 0.46 0.90 0.26 2.30 13.14 7.90 2.90 1.32 3.90 6.13 0.00 0.00 0.00 1.28 0.87 5.57 22 I4_AR2 ActiveIntronRegion 0 0.38 0.47 0.00 0.00 1.14 1.91 0.69 0.69 1.95 0.00 6.73 17.04 11.89 1.25 3.54 3.30 10.07 0.00 0.00 0.00 1.58 0.00 6.88 23 I4_SR3 SilentIntronRegion 0 2.06 0.08 0.52 0.58 1.42 2.32 1.12 1.98 0.91 0.00 1.21 19.03 10.79 1.67 2.09 4.54 4.00 0.00 0.00 0.00 0.22 1.11 4.79 24 I4_AR3 ActiveIntronRegion 0 1.72 0.00 0.00 2.90 0.84 0.00 0.91 1.51 0.00 0.00 1.53 11.09 19.93 1.66 1.93 2.17 9.28 0.00 0.00 0.00 0.00 0.95 5.81 25 I4_SR4 SilentIntronRegion 0 3.07 0.00 1.32 1.99 1.70 3.29 4.13 0.72 0.00 0.97 2.81 11.35 22.42 6.46 9.09 6.81 9.82 0.00 0.00 0.00 0.00 0.74 12.89 26 I4_AR4 ActiveIntronRegion 0 10.28 0.00 0.18 0.96 5.81 4.50 2.67 0.89 0.00 1.01 2.01 16.20 16.13 2.08 6.97 6.09 7.89 0.00 0.00 0.00 0.77 1.69 8.56 27 I4_SR5 SilentIntronRegion 0 2.65 0.00 0.26 0.52 1.50 1.79 1.34 0.10 0.43 0.19 2.46 12.88 16.92 2.74 3.22 6.56 7.15 0.00 0.00 0.01 1.32 0.94 8.45 28 I4_AR6 ActiveIntronRegion 0 0.24 0.00 0.20 0.54 0.30 2.32 0.00 0.00 0.00 0.23 2.08 14.84 9.96 3.16 1.33 3.84 10.42 0.00 0.00 0.28 3.08 0.23 12.07 29 I4_AR7 ActiveIntronRegion 0 0.59 0.00 0.00 0.00 0.74 0.51 0.55 0.00 0.35 0.94 0.53 5.39 10.04 2.62 2.29 7.22 9.63 0.00 0.00 0.00 1.83 1.15 15.77 30 I4_SR7 SilentIntronRegion 0 1.12 0.06 0.30 0.63 0.79 1.93 1.12 0.46 0.77 0.24 1.52 13.32 12.36 2.29 1.94 4.27 6.28 0.01 0.00 0.03 0.83 1.04 4.47 31 I4_AR8 ActiveIntronRegion 0 4.39 0.00 0.14 0.00 1.61 0.76 0.00 0.77 0.00 1.56 5.23 13.66 4.58 9.02 3.02 2.63 6.01 0.00 0.00 0.00 2.74 4.12 11.15 32 I4_SR9 SilentIntronRegion 0 0.00 0.00 0.00 0.00 0.93 1.60 0.84 0.00 1.31 0.00 0.92 14.55 7.53 3.29 0.73 7.97 6.02 0.00 0.00 0.00 0.76 1.28 8.79 33 Ix Intron 0 0.91 0.07 0.00 0.63 0.74 1.29 0.87 0.36 0.70 0.32 1.70 13.26 7.77 3.02 1.65 5.94 7.39 0.05 0.00 0.11 0.95 2.55 6.62 34 Ix_SR1 SilentIntronRegion 0 0.91 0.07 0.00 0.63 0.74 1.30 0.87 0.36 0.70 0.32 1.70 13.27 7.78 3.02 1.65 5.94 7.39 0.05 0.00 0.11 0.95 2.55 6.63 35 Ix Intron 0 2.98 0.26 0.00 0.78 1.71 2.11 1.35 0.66 0.71 0.00 1.48 20.18 13.40 2.87 5.80 2.66 2.11 0.00 0.00 0.00 0.00 3.20 3.38 36 Ix_SR1 SilentIntronRegion 0 2.99 0.26 0.00 0.78 1.72 2.12 1.36 0.66 0.71 0.00 1.49 20.28 13.47 2.88 5.83 2.67 2.12 0.00 0.00 0.00 0.00 3.21 3.40 37 Ix Intron 0 11.13 0.17 0.23 1.20 2.03 1.39 1.06 0.98 1.32 1.15 1.30 9.07 8.81 2.43 5.65 6.00 4.31 0.12 0.00 0.00 0.74 2.28 5.44 38 Ix_SR1 SilentIntronRegion 0 11.15 0.17 0.23 1.20 2.03 1.39 1.06 0.98 1.32 1.15 1.30 9.09 8.83 2.43 5.66 6.01 4.31 0.12 0.00 0.00 0.74 2.28 5.45 39 Ix_AR1 ActiveIntronRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 16.39 14.12 1.16 0.00 1.09 0.00 0.00 0.00 0.00 0.00 5.80 1.83 40 E5_Aa NovelBoundary 0 10.67 0.00 0.00 0.00 4.16 7.78 0.00 0.00 1.27 0.00 0.00 6.30 0.00 4.94 4.45 11.79 0.00 0.00 0.00 0.00 0.00 0.00 8.37 41 ER5a ExonRegion 0 3.78 0.20 4.79 4.14 6.51 22.67 6.08 2.72 7.42 1.76 25.99 35.59 21.87 42.95 14.00 27.70 27.84 0.00 0.00 0.00 36.63 65.04 73.29