Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C8orf59 Gene 0 220.47 218.45 197.97 171.64 207.25 277.06 138.73 118.24 60.99 103.90 288.68 143.10 75.60 158.59 316.26 245.49 235.55 45.53 189.84 91.86 103.66 222.32 121.14 2 417663 Transcript 1 130.76 571.87 475.53 206.13 483.28 1595.44 491.66 459.82 231.86 539.90 702.70 39.01 6.49 227.85 496.94 521.74 301.17 194.33 383.82 57.85 179.09 493.73 409.32 3 431163 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 458398 Transcript 0 116.47 19.21 55.11 68.36 47.28 4.77 26.37 9.94 11.89 1.48 33.96 7.50 0.00 32.02 62.18 145.86 99.49 9.08 19.86 18.86 18.53 19.29 14.94 5 421308 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 321777 Transcript 0 0.35 0.00 5.04 0.00 0.59 0.00 0.51 0.77 0.00 3.25 6.44 0.72 0.00 0.72 3.38 1.16 5.32 0.00 1.24 0.71 0.61 0.81 0.00 7 IG30_AR4 ActiveIntergenicRegion 0 9.36 0.00 0.00 3.48 1.18 4.03 0.00 5.66 4.70 1.50 4.63 15.94 0.00 11.65 3.63 3.92 9.02 1.19 0.00 0.94 0.91 0.92 1.29 8 IG30_AR3 ActiveIntergenicRegion 0 3.77 0.45 0.82 4.84 2.99 4.92 1.13 2.84 2.42 2.68 2.59 19.82 5.74 9.50 4.12 3.91 9.56 2.26 0.00 1.43 0.00 0.00 0.00 9 ER1a ExonRegion 0 74.85 57.83 24.60 17.09 31.39 56.00 40.75 10.67 5.54 8.73 30.12 3.70 0.11 26.54 43.09 29.65 19.64 11.31 45.14 12.51 28.11 37.40 32.59 10 E1_Ab KnownBoundary 0 138.02 126.36 49.35 29.23 50.08 98.69 107.62 17.83 11.28 16.20 55.70 11.85 0.00 68.16 85.79 61.01 38.62 19.81 53.93 23.20 48.19 69.01 58.05 11 ER1b ExonRegion 1 1254.57 1446.53 588.05 402.39 814.69 1486.02 778.39 320.78 175.39 346.33 1090.01 20.82 23.73 697.73 1217.97 1121.19 780.08 242.11 743.36 305.60 455.65 828.78 631.68 12 E1_Da NovelBoundary 0 36.75 8.29 11.65 30.13 164.35 114.48 117.83 6.78 11.14 6.10 18.43 6.00 0.00 7.48 0.00 40.76 12.90 18.94 17.69 12.40 19.40 12.37 7.43 13 E1a_E2a KnownJunction 1 708.20 57.49 340.02 374.08 247.79 65.13 195.91 89.01 59.72 53.08 251.59 11.70 0.00 173.41 278.26 585.57 634.97 64.92 120.66 203.70 77.04 83.46 55.40 14 E1a_E2b KnownJunction 0 116.47 19.21 55.11 68.36 47.28 4.77 26.37 9.94 11.89 1.48 33.96 7.50 0.00 32.02 62.18 145.86 99.49 9.08 19.86 18.86 18.53 19.29 14.94 15 E1a_E3a KnownJunction 1 130.76 571.87 475.53 206.13 483.28 1595.44 491.66 459.82 231.86 539.90 702.70 39.01 6.49 227.85 496.94 521.74 301.17 194.33 383.82 57.85 179.09 493.73 409.32 16 I1 Intron 0 9.08 4.36 5.08 18.55 24.02 21.85 23.56 7.37 4.24 4.07 13.97 16.71 16.60 28.81 10.13 53.59 16.78 4.67 8.60 15.55 10.85 13.24 6.07 17 I1_AR1 ActiveIntronRegion 1 7.61 4.71 5.85 21.04 26.25 23.49 25.30 8.43 4.83 4.65 15.18 15.91 19.53 32.61 11.37 63.77 18.92 5.09 9.28 17.13 12.84 14.95 5.71 18 I1_SR2 SilentIntronRegion 1 13.56 1.21 1.72 6.81 6.51 7.73 10.59 1.17 2.04 1.43 7.37 33.23 4.44 2.59 2.90 4.58 3.93 2.95 7.23 6.67 1.31 3.43 6.98 19 ER2a ExonRegion 1 612.73 52.87 298.68 306.99 224.76 66.02 181.38 72.60 55.27 47.88 236.30 21.65 9.38 246.87 258.94 552.07 572.71 61.90 122.64 193.08 77.68 84.90 61.67 20 ER2b ExonRegion 0 302.66 27.32 237.03 261.78 126.56 32.71 72.96 72.88 53.94 39.21 124.28 61.90 51.59 80.81 192.50 279.86 285.39 38.10 34.35 111.62 44.67 32.94 39.29 21 E2_Da KnownBoundary 1 231.60 15.66 112.39 132.48 64.86 0.00 37.89 12.73 20.60 10.53 67.86 108.34 72.40 55.74 103.71 139.19 150.26 1.58 8.38 94.09 29.65 12.06 25.18 22 E2a_E3a KnownJunction 0 6.82 12.76 25.55 3.86 4.33 32.71 19.25 28.01 14.61 13.35 20.53 23.11 6.82 2.30 16.56 3.85 8.32 4.89 3.76 3.00 8.77 3.12 12.46 23 ER2c ExonRegion 1 81.74 16.06 141.58 187.75 76.89 59.21 62.13 18.85 10.95 7.38 199.09 104.45 30.19 90.56 121.89 86.02 379.07 5.90 11.79 162.56 74.88 26.85 34.02 24 E2_Db NovelBoundary 0 32.82 12.56 7.33 32.63 35.65 64.34 60.28 37.75 18.08 21.22 55.07 74.57 33.93 17.78 33.13 35.20 52.64 16.33 23.25 33.24 17.61 58.78 25.44 25 E2b_E3a KnownJunction 1 17.34 0.00 182.34 331.59 82.77 0.00 54.19 0.00 0.00 0.00 222.90 143.60 6.82 139.03 245.63 172.69 609.82 0.00 0.00 292.42 54.55 0.00 0.00 26 I2 Intron 0 60.44 21.97 27.50 40.42 54.54 30.83 40.45 35.89 21.59 20.55 35.44 75.31 40.12 44.63 45.62 40.69 27.28 10.03 16.82 22.16 15.83 40.03 25.40 27 I2_AR1 ActiveIntronRegion 0 61.02 22.09 28.10 41.88 51.38 30.70 40.95 36.94 22.67 22.67 38.10 72.84 41.21 46.42 46.94 45.13 29.96 11.70 17.36 23.85 18.82 38.57 28.20 28 I2_SR1 SilentIntronRegion 0 74.74 26.76 33.61 47.08 60.40 34.08 54.66 36.12 25.85 19.71 42.61 103.54 40.07 54.06 59.60 33.88 20.32 4.07 16.93 26.99 7.27 65.60 19.97 29 I2_AR2 ActiveIntronRegion 0 51.89 19.45 22.03 30.40 68.89 30.42 32.13 30.81 14.45 10.29 18.97 76.45 35.06 31.78 33.16 21.37 16.92 4.17 14.15 11.62 4.39 36.67 13.72 30 E3_Aa NovelBoundary 1 66.97 12.83 15.88 46.71 29.97 31.40 37.23 31.18 18.29 21.44 17.85 110.59 83.60 26.43 26.08 12.13 16.83 2.11 9.13 11.31 3.15 40.78 3.76 31 ER3a ExonRegion 0 73.66 107.40 609.65 491.05 483.46 376.88 188.35 346.65 176.46 316.73 745.72 287.15 162.79 331.86 642.99 606.85 541.15 94.14 323.98 233.41 288.48 337.33 180.84 32 E3a_E5a KnownJunction 0 10.89 29.73 608.55 592.33 267.40 83.99 213.62 432.76 249.25 366.69 879.54 568.24 245.44 529.23 990.79 557.55 410.66 131.45 898.19 192.14 258.97 843.86 418.02 33 E3a_E6a NovelJunction 1 0.00 5.92 96.36 23.51 20.97 8.69 18.68 17.25 12.73 111.50 140.30 12.45 8.28 39.03 128.69 34.52 99.86 10.49 50.64 9.14 5.62 32.15 36.96 34 ER4a ExonRegion 0 0.35 0.00 5.04 0.00 0.59 0.00 0.51 0.77 0.00 3.25 6.44 0.72 0.00 0.72 3.38 1.16 5.32 0.00 1.24 0.71 0.61 0.81 0.00 35 I4 Intron 1 42.82 31.90 12.99 21.62 35.36 41.90 20.84 18.19 9.66 24.40 11.51 58.45 34.00 21.69 12.69 13.79 7.99 3.43 7.23 9.55 2.89 17.13 5.93 36 I4_AR1 ActiveIntronRegion 1 31.58 32.65 12.44 19.10 31.94 43.11 21.30 23.40 11.73 26.71 8.82 77.39 45.50 21.49 9.38 7.58 6.53 2.25 8.06 8.72 0.52 15.23 4.53 37 I4_SR1 SilentIntronRegion 0 34.28 20.85 7.33 13.54 27.35 33.21 18.00 8.16 4.84 16.91 9.33 47.94 29.01 24.93 7.25 17.50 12.35 3.46 6.34 7.98 2.90 14.84 2.27 38 I4_AR2 ActiveIntronRegion 1 52.95 33.69 16.61 21.76 33.90 44.65 17.62 19.24 11.36 31.08 23.23 54.10 10.31 25.45 17.85 31.86 12.87 8.94 7.24 15.90 10.74 21.66 14.31 39 I4_SR2 SilentIntronRegion 0 59.97 6.67 8.51 11.21 13.82 9.98 10.89 3.46 1.30 5.10 5.80 18.76 4.69 2.53 4.03 4.29 1.47 0.00 0.00 3.07 0.00 3.59 0.00 40 I4_AR3 ActiveIntronRegion 0 108.69 30.47 19.22 29.65 59.66 46.75 29.45 16.19 7.80 21.85 8.17 37.52 23.04 14.50 27.43 6.05 3.36 0.16 2.85 11.80 1.28 23.21 6.49 41 I4_AR4 ActiveIntronRegion 1 70.03 39.89 25.95 46.42 60.20 58.03 34.89 21.05 14.68 34.95 10.35 16.30 75.59 29.28 26.37 4.81 5.24 3.80 0.56 9.39 1.10 12.75 8.21 42 I4_AR5 ActiveIntronRegion 0 54.11 43.15 24.93 47.82 36.88 56.29 31.54 23.97 14.77 31.56 10.84 17.69 51.39 18.57 19.05 14.86 4.88 4.98 5.12 8.23 0.00 28.81 7.66 43 I4_AR6 ActiveIntronRegion 0 38.95 49.10 10.26 30.89 50.75 43.68 18.70 14.62 6.73 17.56 12.77 48.50 22.87 15.93 16.79 14.39 3.41 1.70 12.46 6.45 3.79 20.84 5.51 44 E5_Aa NovelBoundary 1 52.23 41.70 56.09 60.90 51.02 44.18 36.92 25.79 22.74 35.65 9.48 68.72 27.27 18.54 19.66 12.90 4.77 9.78 0.00 8.95 5.19 24.25 15.79 45 ER5a ExonRegion 0 121.33 106.06 522.37 463.80 311.42 228.08 165.78 392.83 198.89 319.92 713.39 464.92 220.47 399.34 908.04 489.92 457.24 126.94 619.68 177.32 200.97 909.38 359.30 46 E5_Da NovelBoundary 0 137.43 60.45 52.33 44.85 20.63 45.77 18.50 21.28 21.76 43.70 14.64 25.51 31.49 16.19 18.79 0.00 0.00 3.44 0.00 3.07 5.50 14.21 6.91 47 E5a_E6a KnownJunction 1 293.83 159.51 341.24 309.72 635.91 718.45 287.10 247.51 190.83 184.08 304.18 304.90 166.55 89.23 333.64 122.10 252.73 38.80 103.63 128.86 109.28 295.39 57.36 48 I5 Intron 0 12.29 14.76 9.84 18.11 18.86 17.11 7.14 8.01 7.63 14.17 6.81 30.15 8.35 8.46 17.23 8.01 4.79 0.38 3.30 6.18 2.28 15.55 2.44 49 I5_AR1 ActiveIntronRegion 0 12.39 14.88 9.92 18.25 19.02 17.25 7.19 8.08 7.69 14.29 6.87 30.39 8.42 8.53 17.37 8.08 4.83 0.39 3.33 6.23 2.30 15.68 2.44 50 ER6a ExonRegion 0 178.32 180.92 25.19 26.61 101.45 198.05 74.09 21.22 9.66 16.76 65.49 88.90 51.06 39.22 88.98 60.85 58.59 5.90 62.81 15.96 21.29 49.64 28.81