Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PXMP3 Gene 0 59.45 63.19 26.44 38.33 53.46 77.25 37.01 24.51 24.65 25.51 73.93 54.30 27.75 75.14 73.33 64.02 49.26 19.69 24.56 25.21 32.11 37.02 28.36 2 357039 Transcript 0 3.33 16.25 6.83 8.12 0.00 14.76 5.30 2.55 8.80 13.73 19.32 11.40 0.00 14.66 30.66 11.62 12.25 13.14 0.00 11.31 0.00 0.00 0.00 3 419564 Transcript 0 2.15 0.88 1.55 1.79 0.36 0.49 1.11 1.42 1.93 1.67 3.46 0.20 0.00 2.23 1.64 1.61 2.21 2.50 3.00 1.76 2.93 0.36 0.20 4 IG39_AR4 ActiveIntergenicRegion 0 2.73 2.58 3.06 3.60 3.69 2.11 4.39 1.66 1.80 2.53 2.75 14.57 13.50 8.61 0.35 5.83 2.09 1.90 0.41 3.51 0.57 1.88 1.14 5 IG39_SR3 SilentIntergenicRegion 0 4.70 2.66 0.88 2.13 3.36 1.81 2.80 1.39 1.15 3.63 1.41 28.69 10.24 6.35 2.32 2.19 1.45 1.24 1.99 3.35 0.42 0.84 0.92 6 IG39_AR3 ActiveIntergenicRegion 0 3.08 1.80 4.93 3.43 1.72 1.94 0.91 0.81 0.53 2.88 6.25 9.27 1.39 11.17 3.26 8.93 6.91 3.76 2.99 1.68 1.93 0.66 1.85 7 IG39_SR2 SilentIntergenicRegion 0 3.03 1.98 2.25 1.66 1.29 1.88 1.92 0.00 1.43 1.84 5.36 3.68 1.47 10.91 2.39 5.89 2.11 3.70 3.86 2.03 1.22 1.02 0.00 8 IG39_AR2 ActiveIntergenicRegion 0 4.23 1.78 2.45 0.00 0.00 7.79 1.32 0.00 0.00 0.00 9.66 0.00 4.69 4.87 0.00 2.23 0.00 11.09 3.58 2.13 5.23 0.00 0.00 9 ER1a ExonRegion 1 85.06 73.34 17.88 16.51 96.69 161.52 60.74 15.45 14.23 15.75 95.23 3.95 3.29 96.28 74.10 110.18 73.96 28.41 43.66 29.79 66.67 53.29 48.62 10 E1a_E2b KnownJunction 0 3.33 16.25 6.83 8.12 0.00 14.76 5.30 2.55 8.80 13.73 19.32 11.40 0.00 14.66 30.66 11.62 12.25 13.14 0.00 11.31 0.00 0.00 0.00 11 E1a_E3a NovelJunction 0 0.00 8.29 3.43 11.39 14.52 16.52 4.50 4.39 0.00 4.51 0.00 0.00 0.00 0.00 6.30 3.42 0.00 6.34 0.00 0.00 0.00 0.00 0.00 12 E1b_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER1b ExonRegion 0 0.09 0.00 1.94 1.70 0.00 0.00 1.21 1.66 1.34 1.58 0.32 0.18 0.00 1.02 0.00 1.86 0.69 4.54 3.58 1.24 0.18 0.26 0.00 14 I1 Intron 0 1.82 1.36 1.22 1.72 2.54 2.17 4.57 1.95 1.80 1.73 5.42 17.56 12.87 5.25 2.30 7.10 6.94 1.23 1.07 3.38 2.18 1.99 1.59 15 I1_AR1 ActiveIntronRegion 0 1.36 0.62 0.47 0.84 0.94 0.90 4.47 1.24 1.30 1.54 5.14 20.48 10.98 5.20 2.53 8.50 9.01 1.66 1.64 4.00 2.72 2.58 0.76 16 I1_SR2 SilentIntronRegion 0 2.23 1.57 1.59 2.32 3.64 1.99 5.22 1.58 1.69 1.57 4.90 19.07 14.72 5.13 3.09 7.43 7.25 1.30 1.20 3.43 2.16 1.74 1.49 17 I1_AR2 ActiveIntronRegion 0 0.17 0.01 0.00 1.40 2.76 1.86 3.28 2.24 2.14 2.08 3.16 17.98 14.38 4.71 0.80 2.91 6.17 0.42 0.73 4.26 0.81 2.17 1.63 18 I1_SR3 SilentIntronRegion 0 1.17 0.92 0.21 1.27 0.61 2.05 4.58 1.31 1.45 0.82 4.05 24.15 11.92 5.04 0.47 5.55 4.25 0.96 0.36 2.16 1.12 2.05 0.82 19 I1_AR3 ActiveIntronRegion 0 1.08 1.28 2.31 1.51 0.42 0.46 1.48 2.64 1.65 2.03 7.79 6.72 5.37 4.74 1.32 13.20 8.76 2.13 0.00 4.14 5.46 1.03 4.02 20 I1_AR4 ActiveIntronRegion 0 4.26 4.47 2.00 1.49 3.42 7.37 6.29 7.07 3.03 7.19 6.71 23.28 14.07 9.24 4.96 6.52 7.24 1.01 0.58 2.33 1.61 3.81 2.15 21 I1_SR5 SilentIntronRegion 0 4.97 2.17 1.56 2.17 6.85 5.48 5.08 2.75 2.36 1.09 4.54 13.10 10.95 5.69 5.43 1.90 7.04 1.77 0.68 2.27 1.41 0.44 0.00 22 E2_Aa NovelBoundary 0 0.00 9.01 0.00 0.00 13.07 0.00 5.92 2.55 1.45 1.26 7.79 0.00 6.82 0.00 4.45 3.16 0.00 8.37 4.52 0.00 12.29 0.00 4.27 23 E2_Ab NovelBoundary 0 17.19 6.64 1.15 1.76 19.52 0.00 4.50 0.00 5.21 2.93 4.69 0.00 0.00 2.35 0.00 4.36 0.00 0.00 19.01 12.46 14.02 0.00 0.00 24 ER2a ExonRegion 0 6.35 2.64 2.70 3.68 1.07 1.47 2.12 2.59 4.45 3.44 10.05 0.43 0.00 5.68 4.93 2.97 5.94 2.96 5.42 4.04 8.59 0.83 0.59 25 ER2b ExonRegion 1 31.05 36.72 53.70 52.75 47.48 58.35 28.54 53.58 61.57 66.03 278.66 49.89 18.89 267.49 225.69 256.42 196.63 67.10 105.41 85.18 173.32 139.75 115.88 26 E2a_E3a KnownJunction 1 47.27 73.80 57.63 65.19 142.44 77.74 56.53 51.88 55.96 57.27 174.57 42.46 59.74 292.25 277.15 569.85 136.98 134.06 109.18 131.48 59.86 163.86 275.55 27 E3_Aa NovelBoundary 1 3.48 11.38 1.45 5.06 24.02 2.90 6.62 2.34 1.79 1.16 2.37 24.46 20.62 4.77 4.45 4.27 0.00 0.00 13.27 0.00 0.00 6.06 0.00 28 ER3a ExonRegion 0 58.79 63.69 26.55 39.90 50.80 72.03 35.75 24.59 24.62 25.33 67.26 58.72 30.09 68.84 69.67 55.73 43.71 17.85 21.05 23.40 25.82 33.25 24.64 29 IG38_SR5 SilentIntergenicRegion 0 11.17 17.24 5.77 15.98 13.66 5.40 5.66 10.01 7.32 7.00 2.95 22.56 15.79 2.89 5.44 6.15 5.23 0.59 3.03 13.45 0.70 4.89 4.41 30 IG38_AR4 ActiveIntergenicRegion 0 21.89 19.14 7.90 34.62 24.36 7.72 11.76 13.45 11.09 12.13 1.99 25.05 14.34 3.79 10.15 8.88 3.04 3.64 2.64 7.25 1.22 1.84 3.31