Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DPY19L4 Gene 0 27.93 56.13 30.75 81.08 58.95 67.05 60.20 35.07 48.77 51.11 33.77 91.44 79.82 37.02 28.39 26.69 22.47 19.44 39.82 40.80 38.56 110.07 45.83 2 414645 Transcript 0 16.75 33.90 17.77 39.40 25.69 36.69 34.85 19.70 22.89 29.30 15.43 16.91 15.18 15.67 17.67 26.05 14.06 20.20 25.72 22.00 44.14 39.06 31.45 3 396156 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 396155 Transcript 0 0.00 0.00 0.10 0.00 0.89 1.22 0.00 0.00 0.51 0.00 0.00 2.89 0.00 0.14 0.97 0.00 0.00 0.00 1.06 0.71 0.73 0.00 0.00 5 342856 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 6 ER1a ExonRegion 0 14.59 32.81 2.60 10.26 13.57 31.06 32.42 9.94 7.95 17.02 20.83 5.47 7.34 21.44 14.98 47.45 22.99 37.38 34.93 20.29 70.74 26.39 58.17 7 E1a_E5b KnownJunction 0 0.00 5.79 1.12 8.12 0.00 5.34 14.71 6.04 14.38 13.46 9.11 0.00 0.00 4.83 4.45 11.62 3.55 8.54 7.44 17.32 44.17 19.53 6.66 8 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER3a ExonRegion 0 0.00 0.00 0.10 0.00 0.89 1.22 0.00 0.00 0.51 0.00 0.00 2.89 0.00 0.14 0.97 0.00 0.00 0.00 1.06 0.71 0.73 0.00 0.00 10 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 11 ER5a ExonRegion 0 1.06 4.07 1.84 6.81 5.35 8.25 6.62 4.32 9.88 7.45 6.77 4.33 4.69 4.87 5.80 7.43 6.60 5.54 7.96 12.77 24.24 8.33 5.87 12 ER5b ExonRegion 0 2.14 7.71 5.99 24.99 13.45 18.75 18.20 20.96 21.73 32.07 55.81 36.76 34.41 24.70 27.64 45.88 36.79 40.70 60.26 44.31 136.01 58.51 61.54 13 E5a_E6a KnownJunction 0 0.00 9.80 7.86 40.12 11.04 10.73 12.85 17.99 17.16 31.00 41.54 86.73 38.80 66.04 34.49 89.04 36.09 74.12 77.56 39.25 91.68 90.99 105.17 14 E5a_E7a NovelJunction 0 0.00 6.31 1.12 10.72 3.65 0.00 5.87 3.49 11.20 6.12 14.32 6.00 20.45 29.43 5.44 24.01 11.87 33.87 26.45 16.36 24.90 27.74 81.86 15 ER6a ExonRegion 0 7.08 10.14 11.43 29.81 15.33 30.24 28.62 17.69 26.46 25.86 29.32 57.32 62.66 40.07 18.31 39.71 26.38 37.32 31.06 36.41 67.29 59.17 54.60 16 E6_Da NovelBoundary 0 3.78 0.00 0.00 3.43 0.00 0.00 1.85 4.60 1.16 0.00 0.00 0.00 13.31 0.00 5.32 7.52 11.97 0.00 0.00 5.75 0.00 0.00 0.00 17 E6a_E7a KnownJunction 0 10.74 42.76 11.92 25.97 8.06 50.37 39.75 27.23 20.31 24.71 36.22 93.03 40.42 59.74 13.35 38.20 16.18 14.26 35.01 55.29 90.57 60.80 53.69 18 E6a_E8a NovelJunction 0 2.82 0.00 1.83 2.60 7.98 21.52 16.78 2.38 1.39 5.67 4.84 0.00 13.64 2.24 0.00 10.51 0.00 1.91 0.00 0.00 3.15 2.69 4.35 19 ER7a ExonRegion 0 19.47 43.02 18.84 33.88 52.04 48.71 46.76 32.65 47.17 38.69 49.68 86.21 87.41 63.00 27.80 46.25 36.45 28.69 38.82 62.66 90.09 98.18 68.03 20 E7a_E8a KnownJunction 0 31.34 44.86 20.84 43.52 80.14 114.54 95.04 44.77 59.40 42.15 86.60 170.01 161.19 79.64 48.58 52.46 73.12 41.16 42.64 89.16 102.18 158.59 89.55 21 ER8a ExonRegion 0 16.39 29.47 16.87 46.15 57.90 54.50 60.10 33.44 51.27 48.71 74.07 156.00 130.40 71.18 28.51 54.47 45.54 36.03 48.15 74.35 68.10 127.95 76.35 22 E8a_E9a KnownJunction 0 6.74 24.34 13.96 44.62 32.77 45.66 44.60 28.51 65.62 56.89 75.12 205.42 124.99 95.42 35.97 50.24 46.10 35.73 47.44 96.13 42.69 129.51 99.11 23 ER9a ExonRegion 1 22.25 28.00 19.92 59.47 43.60 41.42 64.39 34.45 47.97 49.84 77.77 149.37 134.60 75.52 25.02 40.71 49.40 35.88 46.82 78.32 84.51 143.29 77.58 24 E9_Da NovelBoundary 1 5.93 15.13 9.64 12.99 28.01 4.26 7.95 0.00 5.01 2.98 0.00 24.46 0.00 16.60 13.35 0.00 25.53 8.62 17.13 20.65 2.90 11.33 7.09 25 E9a_E10a KnownJunction 0 3.78 29.73 13.69 47.55 12.65 42.31 48.89 12.32 41.55 36.10 33.38 98.28 99.18 36.26 10.14 36.57 20.85 29.64 24.57 43.53 61.84 139.49 66.33 26 E9a_E11a NovelJunction 0 0.00 2.57 0.00 4.89 6.96 0.00 4.50 0.00 3.59 1.67 5.00 0.00 6.82 2.47 4.45 3.42 0.00 3.77 4.52 9.20 0.00 16.53 8.37 27 I9_AR1 ActiveIntronRegion 0 9.96 9.63 8.59 23.94 10.61 7.82 13.14 18.57 7.66 7.86 4.52 21.08 15.38 4.36 9.59 7.32 4.69 3.96 4.21 5.69 1.34 11.01 2.77 28 ER10a ExonRegion 1 8.55 36.16 9.05 43.00 31.85 40.83 48.28 25.41 43.02 39.05 45.36 119.41 115.81 50.28 11.04 26.65 41.71 30.23 44.67 53.12 74.18 118.86 58.31 29 E10a_E11a KnownJunction 0 7.56 25.19 17.09 47.68 29.12 47.76 39.39 27.52 44.36 39.03 43.85 133.39 111.84 46.32 5.07 23.50 23.56 25.74 30.40 40.65 42.56 145.00 48.49 30 ER11a ExonRegion 1 10.63 28.74 12.42 45.68 26.14 45.84 59.58 21.15 41.02 37.22 48.72 91.75 92.76 46.34 15.75 30.10 41.57 24.64 29.82 55.00 41.04 116.99 44.27 31 E11a_E12a KnownJunction 0 3.78 22.43 9.11 44.78 62.14 33.16 65.32 21.36 57.12 38.95 57.54 116.59 74.83 38.32 9.39 30.85 22.81 23.71 25.32 62.64 45.22 118.18 46.18 32 ER12a ExonRegion 0 10.90 30.01 10.38 43.31 25.93 54.81 49.57 21.23 46.67 33.51 41.32 104.83 105.67 36.21 17.45 23.48 22.43 19.75 27.82 37.56 41.62 102.72 45.43 33 E12_Da NovelBoundary 0 2.82 6.05 3.28 3.53 8.66 5.00 5.83 8.91 3.10 0.00 7.16 6.00 14.45 17.19 0.00 0.00 8.51 4.19 7.72 5.82 6.30 10.53 0.00 34 E12a_E13a KnownJunction 0 12.97 37.23 7.81 42.62 0.00 51.67 25.04 21.15 50.20 24.66 28.17 100.38 126.29 28.25 22.25 25.98 21.88 18.20 14.97 37.65 47.14 63.13 29.71 35 ER13a ExonRegion 1 14.52 29.35 11.59 38.95 29.70 51.33 56.54 16.87 43.83 33.75 47.40 99.05 119.10 45.71 15.44 31.43 32.08 23.52 29.09 43.65 34.77 122.65 41.56 36 E13a_E14a KnownJunction 0 35.93 39.66 19.66 42.88 51.70 64.34 73.93 13.55 40.39 42.58 41.54 85.38 150.80 65.40 24.72 19.48 41.80 20.89 21.74 53.69 45.34 121.55 35.51 37 E14_Aa NovelBoundary 0 3.78 5.46 5.41 1.37 21.56 0.00 19.17 4.15 2.58 5.48 4.58 13.80 47.24 5.06 4.45 12.13 0.00 0.00 8.28 6.46 0.00 7.65 4.35 38 ER14a ExonRegion 0 21.62 30.23 15.65 41.83 48.09 57.96 68.81 12.19 42.71 36.45 44.95 116.72 128.91 35.58 20.70 21.21 30.78 15.18 20.49 50.52 42.64 106.51 39.17 39 E14a_E15a KnownJunction 0 29.26 75.45 22.89 49.68 51.10 75.70 62.58 13.18 55.90 33.36 57.28 159.80 112.82 33.43 18.54 33.58 40.39 25.20 53.74 58.68 30.64 159.51 53.01 40 ER15a ExonRegion 1 24.67 35.90 16.48 49.43 35.15 68.36 60.88 15.74 49.20 39.98 42.00 149.08 115.81 56.24 18.72 27.27 39.57 18.99 40.39 53.38 51.31 148.01 52.14 41 E15a_E16a KnownJunction 0 10.96 17.50 13.42 55.57 54.41 56.27 87.31 21.15 45.72 51.68 27.06 147.65 101.29 40.97 26.95 23.75 24.50 17.12 57.79 65.71 24.15 142.67 60.69 42 ER16a ExonRegion 0 17.66 32.44 15.60 51.78 39.42 58.73 71.69 27.22 50.06 40.01 44.28 145.87 85.71 44.89 18.88 29.65 35.07 22.68 68.14 65.37 68.88 134.63 82.64 43 E16a_E17a KnownJunction 0 34.67 34.47 7.36 26.77 42.02 56.90 54.85 29.33 43.81 47.38 61.23 94.23 55.68 63.69 13.85 22.30 13.46 16.58 54.21 65.96 95.20 86.52 54.89 44 I16 Intron 0 8.11 9.55 1.52 7.97 5.87 4.31 9.49 2.71 4.78 3.54 3.46 10.58 17.11 4.60 3.87 5.14 3.98 2.90 4.53 6.77 4.15 6.44 5.81 45 I16_SR1 SilentIntronRegion 0 8.11 9.56 1.52 7.98 5.88 4.31 9.50 2.71 4.78 3.54 3.47 10.60 17.13 4.60 3.87 5.15 3.98 2.90 4.53 6.78 4.15 6.45 5.81 46 E17_Aa NovelBoundary 0 0.00 9.60 3.67 18.65 3.48 2.90 13.69 1.56 1.30 9.08 7.53 6.00 19.15 8.95 0.00 15.30 26.46 0.00 0.00 6.52 9.08 11.51 4.27 47 ER17a ExonRegion 0 29.19 47.31 14.46 43.03 40.09 58.58 50.06 22.76 50.02 42.51 67.72 143.09 97.10 55.38 22.99 44.66 48.70 27.18 53.05 67.47 118.22 120.67 69.73 48 E17a_E18a KnownJunction 0 32.30 66.44 15.88 60.13 48.30 61.61 108.95 24.60 65.19 42.84 54.75 153.35 102.10 61.86 13.35 43.24 30.01 22.76 68.80 50.11 121.39 176.84 90.48 49 ER18a ExonRegion 1 26.99 60.44 14.42 51.41 44.92 96.87 79.76 21.68 56.51 40.04 78.64 137.86 71.50 88.76 8.50 46.25 37.12 30.99 88.80 74.73 132.30 137.99 103.97 50 E18a_E19a KnownJunction 1 35.93 71.50 15.35 58.33 59.68 70.41 84.92 20.78 44.42 44.13 76.34 90.78 105.35 93.71 15.08 59.39 38.52 36.44 107.86 75.10 155.68 146.90 116.09 51 ER19a ExonRegion 1 29.43 46.55 14.36 65.01 69.31 77.75 76.65 20.41 56.56 40.96 77.99 75.90 60.18 78.84 27.02 67.03 43.87 44.77 77.79 58.65 131.11 135.96 102.22 52 E19a_E20a KnownJunction 0 36.52 60.45 9.58 79.41 76.91 69.79 76.40 25.26 66.90 42.07 87.81 110.74 63.15 40.20 38.94 72.12 27.58 62.55 86.50 55.99 96.81 120.32 111.14 53 E20_Aa NovelBoundary 0 3.41 0.00 0.00 0.00 10.70 5.79 4.50 0.00 4.72 1.10 0.00 12.15 6.66 7.06 0.00 12.48 4.77 2.20 0.00 5.75 0.00 0.00 3.84 54 ER20a ExonRegion 0 24.44 32.83 14.03 55.48 40.12 68.17 56.28 21.82 55.88 39.98 75.05 106.38 89.00 83.09 32.55 54.30 41.50 44.26 96.54 66.26 101.70 121.64 101.99 55 E20a_E21a KnownJunction 1 40.16 27.96 9.88 55.77 49.32 94.43 76.05 23.95 58.39 45.45 83.28 72.62 86.03 94.18 30.78 59.90 82.84 32.08 61.18 53.43 79.69 145.43 107.81 56 ER21a ExonRegion 0 40.96 47.31 12.40 50.49 54.20 79.98 67.06 23.59 69.07 46.58 69.67 79.89 91.47 66.72 31.66 47.07 49.39 35.46 92.46 50.69 63.88 139.91 91.20 57 E21a_E22a KnownJunction 1 30.67 58.34 6.74 45.75 33.53 67.01 60.50 23.41 67.97 43.68 44.38 86.58 106.32 59.92 4.45 29.05 31.51 15.63 54.87 40.91 62.70 118.79 71.28 58 I21 Intron 0 4.05 9.21 1.87 13.62 12.46 10.06 14.22 4.25 5.71 7.00 6.07 18.48 30.10 6.83 1.68 8.93 4.58 4.25 5.26 11.60 4.37 14.66 4.37 59 I21_AR1 ActiveIntronRegion 0 3.11 11.01 0.48 10.48 9.77 7.75 9.75 5.17 4.25 7.51 4.68 19.27 33.96 6.42 0.53 9.63 2.96 4.31 3.25 14.01 6.34 14.01 5.73 60 I21_SR2 SilentIntronRegion 0 3.23 9.49 2.14 15.59 13.97 12.04 17.78 4.11 6.41 7.44 7.14 16.80 31.67 8.10 1.55 9.95 4.79 5.75 6.75 11.03 2.55 15.16 4.81 61 I21_AR2 ActiveIntronRegion 0 7.60 8.23 4.14 19.21 16.57 10.76 18.66 4.56 8.08 7.19 7.95 23.99 23.94 6.76 4.16 8.00 8.27 2.65 7.12 11.72 6.84 16.98 2.41 62 E22_Aa NovelBoundary 0 9.63 12.96 1.83 10.32 12.56 7.27 36.61 11.62 11.14 10.85 2.68 6.00 27.92 5.24 10.01 0.00 4.77 0.00 13.46 8.63 2.29 13.35 0.00 63 ER22a ExonRegion 0 30.10 74.01 31.25 102.88 78.24 75.69 69.93 40.97 56.17 59.32 30.30 125.70 109.82 36.13 30.82 21.12 13.44 12.69 33.62 39.56 21.40 147.31 40.22 64 E22_Da KnownBoundary 0 25.78 54.33 47.40 128.36 95.33 98.24 109.79 49.00 47.95 83.41 9.42 88.68 27.27 33.90 34.24 4.02 0.00 1.78 21.08 34.39 11.00 109.42 16.39 65 ER22b ExonRegion 0 35.66 63.10 49.59 99.82 63.51 73.69 57.43 43.12 46.35 57.42 16.35 45.25 38.20 20.73 33.57 19.08 15.62 14.69 34.80 28.40 17.50 71.27 29.53