Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MATN2 Gene 0 103.40 37.48 14.60 33.57 54.06 110.95 26.27 49.53 98.96 41.86 0.46 1.16 3.04 1.09 0.89 1.62 1.27 54.39 43.74 59.22 51.56 18.84 9.80 2 378716 Transcript 0 5.82 4.07 2.14 6.04 4.35 6.58 1.99 10.36 13.51 8.46 0.97 0.00 0.00 0.41 0.00 0.00 0.00 1.39 1.08 4.48 1.67 0.78 1.10 3 254898 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 428441 Transcript 0 191.44 21.31 10.91 48.94 43.04 126.86 27.20 35.41 82.99 33.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.16 45.55 30.17 35.46 5.76 18.52 5 ER1a ExonRegion 0 8.95 6.70 3.97 0.62 2.00 43.70 3.66 8.89 17.36 5.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.43 19.21 9.56 28.18 5.25 0.73 6 E1a_E2a KnownJunction 0 0.00 2.83 7.10 1.63 0.00 2.38 4.50 11.83 39.03 8.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46.64 22.02 19.49 72.53 14.57 0.00 7 ER2a ExonRegion 0 3.77 2.88 5.85 3.98 5.88 47.29 8.47 13.71 46.82 15.46 0.00 0.00 0.00 0.00 0.62 0.00 0.00 55.51 40.20 41.62 49.58 12.89 2.97 8 E2a_E3a KnownJunction 0 10.82 6.71 2.93 13.65 24.87 145.09 23.63 23.95 64.55 35.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34.32 30.87 62.96 63.51 11.39 3.93 9 ER3a ExonRegion 0 22.42 13.59 8.19 15.93 19.17 66.84 11.36 24.24 85.31 36.87 0.00 0.00 0.00 0.24 0.18 0.00 0.00 76.03 46.18 63.21 67.84 15.72 11.68 10 E3a_E4a KnownJunction 0 91.57 10.98 28.38 28.23 23.94 130.04 39.92 46.95 153.07 45.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 183.89 87.16 70.31 117.19 44.21 41.49 11 ER4a ExonRegion 0 40.33 19.76 16.02 20.78 22.36 116.17 18.30 46.65 116.18 44.04 0.00 0.00 0.00 0.41 0.00 0.00 0.00 116.18 62.33 77.84 90.51 24.34 14.90 12 E4a_E5a KnownJunction 0 42.60 23.09 26.76 13.19 30.98 142.65 22.96 47.03 95.83 36.96 0.00 0.00 0.00 3.00 0.00 0.00 0.00 83.45 71.44 74.59 77.59 15.98 12.29 13 ER5a ExonRegion 0 23.64 18.25 13.92 15.61 22.71 82.63 14.60 30.07 101.53 33.75 0.00 0.00 0.00 0.26 0.00 0.00 0.00 65.72 45.32 56.53 72.51 22.24 12.03 14 E5a_E6a KnownJunction 0 12.37 21.31 12.95 12.69 24.36 61.50 14.00 20.37 94.65 32.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 75.57 34.82 70.44 45.84 28.47 0.00 15 ER6a ExonRegion 0 22.47 21.03 13.21 18.87 41.55 129.53 18.09 35.07 134.17 40.99 0.00 0.00 0.00 0.67 0.00 0.00 0.00 88.20 55.94 81.80 70.03 19.06 10.82 16 E6a_E7a KnownJunction 0 51.86 17.69 11.89 22.84 63.41 137.08 17.36 22.63 113.89 43.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 90.29 89.60 62.38 74.01 22.47 18.87 17 E6a_E8a KnownJunction 0 0.00 0.00 0.00 1.66 0.00 5.22 0.00 2.55 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.33 6.20 5.56 0.00 0.00 18 ER7a ExonRegion 0 40.61 28.88 8.34 23.93 42.09 98.50 27.31 29.92 112.93 41.87 0.00 0.00 0.00 0.00 0.85 0.00 0.00 70.76 58.48 70.68 74.50 26.59 18.86 19 E7a_E8a KnownJunction 0 54.38 18.22 7.81 23.64 51.70 130.32 25.08 39.76 109.14 33.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72.54 30.78 77.08 95.26 26.21 19.29 20 ER8a ExonRegion 0 33.28 19.21 5.01 26.21 28.87 86.81 19.48 34.60 82.29 37.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66.85 37.55 70.47 56.36 19.77 15.23 21 E8a_E9a KnownJunction 0 37.12 23.48 3.67 20.51 19.61 142.93 16.91 29.24 85.97 23.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67.53 41.22 42.95 68.63 17.39 3.59 22 I8_AR4 ActiveIntronRegion 0 6.68 15.17 0.00 4.09 6.79 2.26 3.97 3.46 5.89 16.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.07 9.31 17.18 4.75 0.00 0.68 23 I8_AR5 ActiveIntronRegion 0 4.39 6.20 1.68 3.96 4.50 8.62 2.05 4.76 11.73 10.87 0.00 0.00 0.00 0.00 0.00 0.51 0.00 15.55 5.59 12.02 3.22 1.73 3.09 24 ER9a ExonRegion 0 53.02 15.82 5.58 20.47 22.32 92.41 17.41 31.65 92.39 35.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59.34 45.42 73.71 70.00 17.24 7.28 25 E9a_E10a KnownJunction 0 47.49 16.18 5.85 25.34 34.89 65.30 31.00 33.93 102.57 36.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 84.65 52.24 58.16 93.47 3.12 23.47 26 ER10a ExonRegion 0 63.53 28.87 10.48 28.80 52.47 126.01 23.72 35.51 105.81 38.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 83.64 47.34 72.50 80.09 20.21 12.39 27 E10a_E11a KnownJunction 0 74.01 40.98 9.25 41.52 51.27 160.59 25.53 49.21 131.13 40.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68.61 52.52 96.00 88.47 22.60 3.24 28 E11_Aa NovelBoundary 0 6.08 0.00 4.49 16.68 3.14 0.00 10.73 2.09 1.39 6.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.19 4.80 0.00 0.00 0.00 0.00 29 ER11a ExonRegion 0 89.22 60.36 8.81 53.21 50.99 155.50 22.10 57.43 118.07 48.21 0.80 4.44 0.00 1.66 1.70 1.23 2.20 79.89 59.49 92.75 82.22 25.41 12.84 30 E11a_E12a KnownJunction 0 142.69 45.39 10.94 31.26 90.07 167.23 27.29 66.95 142.16 40.32 0.00 0.00 0.00 0.00 0.00 0.00 4.77 65.12 37.74 68.39 77.78 18.00 12.12 31 E12_Aa NovelBoundary 0 5.48 2.89 1.83 24.61 0.00 0.00 2.08 1.77 4.40 4.51 2.05 0.00 0.00 0.00 0.00 3.85 3.93 9.00 7.81 9.01 2.59 0.00 0.00 32 ER12a ExonRegion 0 97.79 31.38 11.84 37.61 47.86 138.46 26.66 66.17 127.67 47.86 0.80 0.63 0.00 0.67 0.00 0.00 1.91 77.24 53.94 71.73 80.68 23.12 7.28 33 E12a_E13a KnownJunction 0 164.33 52.95 14.43 32.23 78.01 222.77 17.84 73.52 141.93 37.28 0.00 6.30 0.00 0.00 0.00 0.00 0.00 116.65 62.50 66.22 100.20 44.88 24.58 34 I12_AR1 ActiveIntronRegion 0 4.25 6.05 1.29 19.01 5.43 0.47 3.54 2.14 1.60 1.30 0.49 2.00 0.00 0.34 0.52 0.00 1.26 0.89 2.42 1.71 0.56 0.00 0.00 35 E13_Aa NovelBoundary 0 3.63 18.09 1.33 8.66 0.00 2.84 6.01 0.00 4.75 0.00 0.00 0.00 0.00 0.00 0.00 8.72 0.00 0.00 0.00 0.00 2.90 0.00 0.00 36 ER13a ExonRegion 0 111.76 47.35 20.38 40.13 66.92 213.79 42.79 73.48 157.89 68.14 0.80 3.80 1.60 1.11 0.00 3.75 1.37 101.07 82.38 76.46 80.34 27.27 20.44 37 E13_Da NovelBoundary 0 7.56 24.93 1.21 17.71 8.23 0.00 4.24 2.55 1.79 4.14 0.00 6.00 0.00 0.00 4.45 0.00 0.00 6.76 8.47 6.52 0.00 0.00 0.00 38 E13a_E14a KnownJunction 0 135.73 61.11 34.42 40.19 67.40 235.89 52.07 74.30 178.01 69.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 85.73 109.93 68.20 60.48 10.65 26.72 39 E13a_E15a NovelJunction 0 5.70 5.99 0.00 0.00 0.00 19.53 3.93 4.72 5.84 4.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.64 0.00 8.63 0.00 0.00 0.00 40 I13 Intron 0 10.05 27.73 6.46 61.50 7.19 5.21 7.31 3.82 7.21 13.39 1.80 2.08 4.41 3.65 2.71 5.00 3.73 13.32 17.60 24.26 1.88 0.94 1.33 41 I13_AR1 ActiveIntronRegion 0 7.89 26.17 5.49 71.58 5.47 4.19 4.94 5.27 3.98 9.66 0.23 0.00 0.46 1.71 2.18 0.36 1.59 2.55 5.36 7.93 0.80 0.25 0.00 42 I13_SR2 SilentIntronRegion 0 3.63 23.80 7.05 67.92 20.45 7.84 4.67 2.59 6.48 13.26 2.04 2.03 3.72 4.49 4.70 4.51 3.73 28.62 28.51 35.04 3.94 1.24 2.79 43 I13_AR2 ActiveIntronRegion 0 19.98 59.42 13.83 124.13 12.09 7.91 13.64 7.52 15.07 29.19 3.23 5.17 7.74 7.83 5.77 8.03 6.33 25.46 44.51 46.71 4.06 2.08 2.15 44 ER14a ExonRegion 0 150.91 59.70 22.23 41.46 78.11 178.21 33.82 67.92 129.97 51.86 0.95 3.36 2.85 3.18 0.25 6.21 4.04 73.61 52.51 72.42 71.80 21.77 12.48 45 E14_Da NovelBoundary 0 7.56 8.75 4.94 16.71 3.82 17.38 4.06 0.00 4.72 8.54 0.00 0.00 0.00 0.00 0.00 0.00 9.54 24.50 0.00 17.13 2.72 0.00 3.67 46 E14a_E15a KnownJunction 0 228.04 47.56 19.69 21.58 116.55 206.02 34.40 63.95 87.59 34.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55.92 55.15 60.85 47.75 16.66 3.67 47 I14 Intron 0 8.84 17.99 2.82 23.82 8.20 8.90 9.94 5.55 7.98 8.10 1.23 3.74 6.71 2.65 2.66 4.79 3.15 12.20 7.44 22.93 1.45 0.76 1.47 48 I14_AR1 ActiveIntronRegion 0 6.35 12.24 2.04 14.46 11.25 8.16 9.58 3.12 7.74 7.24 2.35 0.00 2.00 3.41 1.15 4.07 3.27 17.71 4.89 15.21 3.87 0.52 2.64 49 I14_SR1 SilentIntronRegion 0 8.97 14.60 2.08 17.62 6.42 8.43 8.95 4.78 7.16 7.57 1.23 3.48 4.84 2.50 2.83 5.64 3.02 12.45 10.44 22.97 1.30 0.57 1.53 50 I14_AR2 ActiveIntronRegion 0 8.59 25.02 4.28 36.81 10.23 9.82 12.41 7.85 10.02 9.66 1.02 5.47 10.42 2.67 2.66 4.19 3.81 11.03 4.11 25.93 0.99 0.94 1.32 51 E15_Aa NovelBoundary 0 10.89 13.55 9.22 22.74 12.99 2.90 5.65 4.44 7.73 6.29 2.11 0.00 12.99 0.00 4.45 8.72 3.55 11.57 13.93 12.34 2.47 0.00 0.00 52 ER15a ExonRegion 0 305.89 88.51 28.08 55.29 128.00 262.53 58.70 90.81 146.44 72.27 3.22 1.19 1.29 1.77 2.73 2.97 1.17 74.25 65.46 89.88 52.62 32.48 14.43 53 E15_Da NovelBoundary 0 9.11 12.70 4.91 14.52 11.71 8.12 3.97 12.03 8.62 11.31 7.37 0.00 0.00 0.00 4.45 0.00 0.00 34.07 17.69 34.77 0.00 0.00 3.84 54 E15a_E16a KnownJunction 0 268.57 90.44 30.96 68.89 196.69 258.83 27.87 107.49 183.22 75.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 85.85 81.04 88.65 76.54 30.13 12.29 55 I15 Intron 0 13.40 17.69 2.59 20.91 4.91 3.15 5.95 5.64 8.49 7.08 0.69 3.30 7.26 1.48 1.52 6.33 2.73 13.21 10.18 16.87 1.56 1.60 1.22 56 I15_AR1 ActiveIntronRegion 0 16.62 21.63 3.21 25.93 6.09 3.63 7.38 7.00 10.53 8.78 0.71 4.09 8.73 1.74 1.74 7.63 3.39 16.38 12.39 20.45 1.94 1.99 1.51 57 E16_Aa NovelBoundary 0 24.52 74.39 1.42 31.40 7.89 11.07 30.43 10.39 12.76 10.66 0.00 6.30 0.00 0.00 0.00 0.00 0.00 11.86 13.27 25.50 0.00 3.12 0.00 58 ER16a ExonRegion 0 213.18 83.04 35.13 76.36 107.85 188.86 39.96 89.04 178.41 79.74 0.00 2.53 3.32 0.97 0.00 0.00 0.00 75.45 71.85 77.45 69.69 31.25 10.16 59 E16_Da NovelBoundary 0 10.37 9.47 15.29 38.56 0.00 7.78 1.94 8.83 6.60 6.42 0.00 0.00 21.10 4.89 0.00 0.00 0.00 13.35 4.80 23.59 3.09 3.06 0.00 60 E16a_E17a KnownJunction 0 181.22 61.24 15.88 26.64 65.53 120.73 19.70 56.56 88.74 40.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.56 29.93 20.71 43.18 16.90 15.62 61 E16a_E17b KnownJunction 0 191.44 21.31 10.91 48.94 43.04 126.86 27.20 35.41 82.99 33.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.16 45.55 30.17 35.46 5.76 18.52 62 I16 Intron 0 6.82 17.67 1.79 17.36 4.50 4.37 6.12 2.89 4.64 6.94 0.00 3.00 9.70 1.71 0.86 2.50 0.92 6.43 4.45 17.89 0.31 2.04 0.82 63 I16_SR1 SilentIntronRegion 0 6.92 17.96 1.82 17.65 4.57 4.44 6.22 2.92 4.72 7.06 0.00 3.05 9.86 1.74 0.88 2.54 0.94 6.54 4.53 18.17 0.31 2.08 0.84 64 E17_Aa NovelBoundary 0 32.23 19.47 1.80 43.32 15.62 0.00 6.98 6.20 15.13 9.27 0.00 0.00 13.96 0.00 0.00 8.20 4.30 0.00 21.84 12.59 0.00 0.00 8.71 65 ER17a ExonRegion 0 143.63 49.89 18.25 45.94 72.84 149.64 28.99 74.23 97.42 48.66 0.00 0.00 6.79 0.64 0.00 3.74 6.43 19.62 35.20 58.14 32.94 21.48 10.08 66 E17_Ab KnownBoundary 0 228.19 64.86 24.54 68.32 147.37 192.22 53.57 89.09 114.67 48.00 0.00 0.00 0.00 2.12 0.00 4.36 8.70 15.38 34.45 81.94 32.99 23.21 12.21 67 ER17b ExonRegion 0 410.19 86.70 38.83 94.61 198.74 265.57 76.26 112.13 209.41 92.24 0.00 0.00 4.87 4.94 1.36 1.12 3.90 54.95 89.02 94.42 77.47 35.64 24.22 68 E17_Da NovelBoundary 0 0.00 11.45 2.93 27.54 0.00 0.00 13.96 4.52 1.45 6.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.15 0.00 17.51 0.00 0.00 0.00 69 E17a_E18a KnownJunction 0 525.43 94.79 53.96 97.49 259.17 329.92 85.72 138.09 197.42 111.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58.78 51.86 65.77 79.38 30.00 7.77 70 E18_Aa NovelBoundary 0 3.11 24.67 1.74 31.10 3.90 0.00 12.63 1.60 1.16 7.58 0.00 6.30 13.64 0.00 0.00 4.10 0.00 8.00 3.95 10.48 0.00 0.00 0.00 71 ER18a ExonRegion 0 359.35 87.78 31.95 72.26 161.81 209.56 73.53 127.91 164.23 89.61 0.84 0.00 2.22 2.04 0.00 1.56 1.74 41.28 55.40 65.54 43.19 26.25 14.14 72 E18a_E19b KnownJunction 0 0.00 0.00 25.25 34.59 0.00 0.00 0.00 60.17 85.07 59.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.67 0.00 0.00 0.00 0.00 0.00 73 E18b_E19a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74 ER18b ExonRegion 0 17.99 12.20 0.00 3.41 14.72 10.09 2.65 8.64 4.32 4.59 1.93 0.00 0.00 1.62 0.00 0.00 0.00 2.77 0.00 5.32 0.00 0.00 2.94 75 I18 Intron 0 5.04 16.48 1.76 19.47 4.80 2.46 6.07 5.68 3.55 5.66 0.27 3.65 6.35 1.56 1.22 4.41 3.07 5.14 6.37 16.87 0.76 0.65 0.81 76 I18_AR1 ActiveIntronRegion 0 8.96 5.23 0.57 17.33 11.83 2.69 3.06 10.17 3.64 4.77 0.50 3.02 11.35 2.52 0.00 3.03 1.50 5.46 7.42 12.69 0.14 0.00 1.34 77 I18_SR1 SilentIntronRegion 0 4.39 12.72 1.28 25.73 3.99 2.45 5.32 7.04 4.11 6.82 0.11 5.59 8.95 1.24 1.35 4.67 1.31 5.22 8.03 19.93 1.42 0.58 1.55 78 I18_AR2 ActiveIntronRegion 0 2.19 23.93 2.63 17.28 1.99 3.16 11.06 6.19 3.25 7.36 0.21 3.82 5.85 1.55 2.03 5.40 3.32 2.39 3.79 10.95 0.90 1.46 0.00 79 I18_SR2 SilentIntronRegion 0 5.82 24.14 2.59 22.11 5.76 2.58 6.91 5.37 4.42 6.10 0.43 3.28 5.32 1.97 1.22 4.68 5.55 7.24 7.54 22.05 0.71 0.86 0.73 80 ER19a ExonRegion 0 5.29 4.07 8.58 19.08 2.68 11.00 5.30 30.25 48.17 29.25 1.93 0.00 0.00 0.00 0.00 0.00 0.00 2.77 0.00 6.38 1.10 3.13 1.47 81 ER19b ExonRegion 0 241.39 69.79 21.71 43.25 104.71 132.49 54.99 93.97 129.25 58.72 1.48 3.68 21.03 0.81 1.55 0.40 0.00 14.72 26.86 49.68 24.46 25.35 5.24 82 E19_Da KnownBoundary 0 445.71 137.74 40.80 88.90 223.09 284.61 111.51 155.59 191.32 84.02 0.00 0.00 33.44 2.53 0.00 3.33 0.00 27.36 40.66 73.25 37.87 36.37 0.00 83 ER19c ExonRegion 0 124.71 42.02 15.03 42.16 59.54 63.47 27.07 51.85 70.64 33.18 0.51 1.71 8.40 1.42 2.40 2.54 1.84 8.70 22.51 37.48 9.74 13.21 4.47 84 IG18 Intergenic 0 2.61 19.86 2.73 18.14 5.67 2.17 7.66 2.64 2.30 4.34 0.64 2.89 6.42 0.62 1.50 3.67 3.38 4.57 3.54 13.94 0.80 0.33 0.97 85 IG18_SR1 SilentIntergenicRegion 0 2.67 20.12 2.77 18.80 5.52 2.24 7.85 2.73 2.42 4.43 0.67 2.70 6.47 0.60 1.58 3.31 3.43 4.65 3.66 14.37 0.64 0.34 0.96 86 IG18_SR5 SilentIntergenicRegion 0 2.10 19.63 2.31 6.74 10.08 0.89 5.24 0.91 0.00 3.39 0.00 8.87 7.65 1.47 0.00 12.44 3.27 3.70 1.58 6.92 5.22 0.00 1.45