Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FAM164A Gene 0 30.99 257.67 70.97 190.10 156.38 533.45 178.10 158.97 142.03 87.37 10.12 48.96 50.33 37.14 29.39 24.75 51.33 60.23 45.02 128.62 30.36 82.37 41.77 2 263849 Transcript 0 35.21 343.07 36.18 39.55 96.62 370.30 222.66 74.46 83.92 47.32 18.77 2.93 19.67 34.93 14.07 52.16 90.52 94.34 81.40 160.14 78.97 23.92 124.87 3 450609 Transcript 0 13.05 128.92 41.46 119.79 91.45 318.20 96.59 91.75 73.44 49.54 2.98 24.64 24.11 12.39 13.44 5.71 10.18 15.34 16.81 54.41 3.99 42.44 12.43 4 IG41 Intergenic 0 1.71 16.03 5.61 11.52 11.76 27.40 8.25 14.50 24.24 14.66 0.50 1.28 0.59 0.75 0.32 0.48 0.86 3.94 3.26 13.31 0.29 0.24 0.30 5 IG41_AR1 ActiveIntergenicRegion 0 25.01 247.95 90.87 157.45 143.36 483.28 124.24 184.80 302.81 140.60 5.53 13.41 6.91 8.43 3.88 6.09 8.56 40.04 45.03 179.85 3.09 3.89 3.63 6 IG41_SR1 SilentIntergenicRegion 0 0.56 8.62 1.68 2.44 6.85 9.25 3.33 6.92 27.26 8.16 0.00 3.11 1.47 0.65 0.00 0.39 2.68 12.35 6.35 25.68 2.40 0.55 0.39 7 IG41_AR2 ActiveIntergenicRegion 0 0.80 13.37 1.68 2.93 9.78 15.18 7.44 10.34 25.12 10.18 0.21 2.95 0.77 1.22 0.00 0.32 0.50 9.93 3.42 23.52 0.87 0.22 0.79 8 IG41_SR2 SilentIntergenicRegion 0 0.79 8.66 2.70 7.57 10.14 14.27 6.27 12.58 32.90 10.38 0.24 3.67 0.96 0.94 0.00 0.18 1.43 8.00 4.74 25.34 0.68 0.26 0.73 9 IG41_AR3 ActiveIntergenicRegion 0 2.94 18.38 4.91 6.44 8.37 11.80 5.34 11.34 21.77 8.43 0.09 2.14 0.00 0.48 0.21 0.00 0.59 3.94 1.85 15.02 0.20 0.09 0.26 10 IG41_SR3 SilentIntergenicRegion 0 0.52 10.45 1.96 4.12 4.84 5.21 1.79 7.57 18.87 6.37 0.00 0.78 0.63 1.09 0.00 0.00 0.09 1.18 0.78 12.72 0.18 0.00 0.48 11 IG41_AR4 ActiveIntergenicRegion 0 1.28 17.80 1.72 6.68 7.41 5.48 1.09 7.77 16.18 7.25 0.18 2.08 0.81 0.06 0.35 0.26 1.05 4.74 1.38 10.71 0.95 0.00 0.51 12 IG41_SR4 SilentIntergenicRegion 0 2.18 13.82 2.76 4.84 6.31 3.72 2.85 8.01 23.90 5.84 0.27 0.40 0.26 1.03 0.42 1.00 1.29 11.02 3.81 14.44 0.43 0.00 0.16 13 IG41_AR6 ActiveIntergenicRegion 0 0.25 0.60 0.00 7.58 6.76 1.86 2.17 9.08 11.10 15.27 0.45 0.00 0.00 0.00 0.48 0.00 0.00 0.40 0.74 0.74 0.00 0.00 0.00 14 ER1a ExonRegion 0 27.67 250.16 24.05 22.39 67.70 308.34 139.45 45.66 46.97 31.00 24.16 0.00 12.40 40.25 19.23 56.73 84.64 42.34 46.46 117.54 72.56 28.07 139.78 15 E1_Da NovelBoundary 0 0.00 0.00 3.22 5.93 8.49 7.89 33.65 9.41 15.08 28.12 0.00 0.00 0.00 0.00 0.00 0.00 3.93 6.34 3.58 6.52 2.35 0.00 0.00 16 E1a_E3a KnownJunction 0 42.75 435.97 48.31 56.70 125.55 432.25 305.87 103.26 120.86 63.64 13.37 5.85 26.95 29.61 8.90 47.59 96.40 146.33 116.33 202.75 85.38 19.78 109.95 17 E1a_E4a NovelJunction 0 0.00 5.85 0.00 0.00 27.59 92.73 7.38 1.56 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 I1 Intron 0 0.61 1.05 2.42 15.65 9.36 1.70 10.36 16.31 23.88 21.96 0.89 1.19 2.04 0.52 0.65 0.79 1.51 0.70 1.72 2.98 0.24 0.06 0.04 19 I1_AR1 ActiveIntronRegion 0 0.25 0.61 3.60 10.95 8.02 2.80 10.12 17.89 28.17 26.39 1.41 1.41 1.51 0.96 0.85 0.53 2.27 0.97 1.91 3.83 0.40 0.00 0.18 20 I1_SR1 SilentIntronRegion 0 0.73 1.20 2.03 17.20 9.80 1.33 10.45 15.80 22.49 20.52 0.71 1.12 2.22 0.37 0.59 0.88 1.27 0.62 1.66 2.70 0.19 0.08 0.00 21 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 ER3a ExonRegion 0 13.19 136.22 31.59 39.06 62.62 147.82 84.15 71.79 79.87 37.97 12.43 8.43 17.91 13.16 3.05 25.67 78.49 37.48 43.19 67.12 43.67 16.59 38.56 23 E3a_E4a KnownJunction 1 11.11 37.49 26.73 25.57 29.88 72.91 22.74 48.88 52.57 34.97 24.95 17.71 12.82 14.48 4.45 20.51 96.40 20.56 4.71 60.21 75.74 10.90 3.24 24 ER4a ExonRegion 1 8.36 96.19 47.88 84.51 51.94 125.17 56.13 137.64 154.27 81.58 27.36 26.68 66.98 64.28 37.84 68.41 137.34 125.27 62.65 216.62 97.04 69.50 141.84 25 E4_Da NovelBoundary 0 0.00 2.70 16.65 14.82 16.72 0.00 6.23 36.93 46.82 43.78 0.00 0.00 5.84 0.00 9.77 0.00 4.49 0.00 8.00 8.82 0.00 0.00 3.93 26 E4a_E5a KnownJunction 1 9.85 126.16 55.35 101.59 60.27 206.13 98.79 129.71 142.39 75.05 7.42 31.51 148.53 60.04 18.54 88.01 101.54 98.41 107.39 194.88 80.19 97.12 229.03 27 I4 Intron 0 2.95 5.27 6.26 15.22 17.08 3.94 14.80 20.60 25.18 25.00 1.02 3.46 3.00 1.19 1.02 0.99 3.50 1.10 4.26 3.74 0.37 1.22 0.90 28 I4_SR1 SilentIntronRegion 0 3.59 6.11 7.31 17.54 19.32 4.64 16.49 24.23 28.31 28.65 1.25 3.67 3.24 1.22 0.95 1.29 3.73 1.33 4.82 3.94 0.40 1.12 1.16 29 ER5a ExonRegion 0 12.59 283.71 41.59 83.58 125.21 420.73 185.95 118.27 144.53 66.03 16.38 57.14 64.77 58.29 27.38 30.56 91.73 87.03 44.51 184.72 74.93 70.28 58.84 30 E5a_E6a KnownJunction 0 24.37 318.04 44.00 88.63 114.26 306.19 97.29 94.92 140.28 53.08 14.21 63.02 81.98 55.45 42.52 33.67 78.92 97.91 21.37 136.59 50.53 90.81 52.67 31 ER6a ExonRegion 0 34.76 232.60 46.53 102.01 106.82 398.68 170.47 134.44 160.99 77.08 17.52 95.82 95.84 69.94 32.96 56.06 115.55 144.42 64.34 198.28 54.61 96.71 66.40 32 E6a_E7a KnownJunction 0 26.82 173.13 59.10 108.21 102.72 369.62 152.23 106.38 128.70 69.73 9.48 82.53 59.41 84.47 38.57 89.89 151.19 226.75 111.63 159.73 50.84 110.34 103.63 33 E6a_E8a NovelJunction 0 0.00 5.72 1.83 0.00 0.00 8.01 0.00 4.31 1.42 4.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.82 9.45 0.00 4.27 34 E7_Aa NovelBoundary 0 12.89 8.88 7.81 31.30 36.76 15.67 53.75 15.12 30.35 25.76 2.05 0.00 6.82 4.53 4.45 3.67 7.39 1.87 12.42 9.78 2.72 2.69 0.00 35 ER7a ExonRegion 1 21.95 143.65 37.42 77.89 106.84 303.04 122.84 95.41 143.01 67.23 17.13 103.99 62.10 73.82 26.63 54.30 134.41 180.40 82.98 165.38 92.58 78.42 65.25 36 E7a_E8a KnownJunction 1 17.56 148.26 35.89 53.91 76.74 302.78 128.16 111.02 118.49 45.64 14.27 68.57 58.92 73.28 15.20 47.68 98.08 149.61 17.98 145.86 77.04 63.99 65.22 37 E8_Aa NovelBoundary 0 3.63 3.16 5.74 9.86 30.39 2.90 30.56 16.02 12.12 31.05 0.00 13.80 13.47 0.00 0.00 4.27 4.49 0.00 0.00 11.70 0.00 6.18 0.00 38 ER8a ExonRegion 0 22.35 177.84 47.03 79.17 102.08 387.30 145.74 104.57 122.07 65.61 14.88 50.70 38.08 70.31 29.88 44.40 134.05 193.79 80.11 159.66 97.84 67.36 62.05 39 E8_Da NovelBoundary 0 0.00 2.96 4.17 12.22 10.95 14.88 32.95 19.47 22.25 25.57 0.00 5.55 19.15 10.12 9.52 4.36 31.51 6.38 8.47 20.20 13.65 0.00 4.35 40 E8a_E9a KnownJunction 0 20.45 233.25 61.20 91.60 166.89 571.15 203.59 83.09 121.87 68.36 12.48 69.02 26.78 73.70 46.97 84.08 122.11 216.64 153.04 172.58 73.89 64.72 67.35 41 I8 Intron 0 6.39 32.05 4.44 44.84 37.35 58.72 39.78 43.47 56.68 53.80 4.12 22.89 31.09 12.35 3.54 9.35 17.62 11.17 7.77 40.20 9.32 23.24 16.09 42 I8_AR1 ActiveIntronRegion 0 3.25 5.46 1.40 5.45 10.26 0.70 17.77 14.82 14.13 10.49 0.74 16.70 7.72 5.50 0.92 2.28 7.59 0.71 1.22 16.32 1.69 2.40 3.38 43 I8_SR1 SilentIntronRegion 0 3.16 6.23 1.91 34.42 22.17 7.86 24.06 29.49 39.73 45.56 0.66 10.77 23.23 5.92 2.11 4.23 7.77 3.62 3.02 29.07 1.66 5.46 4.01 44 I8_AR2 ActiveIntronRegion 0 2.22 9.54 2.29 66.79 43.06 13.48 29.97 64.97 96.09 106.82 1.79 15.52 25.34 9.51 1.78 8.07 17.06 8.12 6.56 43.17 5.65 10.08 11.96 45 I8_SR2 SilentIntronRegion 0 3.56 6.62 2.20 34.45 21.93 11.80 14.37 33.73 50.40 45.98 2.03 7.59 6.00 5.31 0.00 5.70 10.62 1.10 5.48 18.82 0.00 6.14 8.84 46 I8_AR3 ActiveIntronRegion 0 6.77 23.90 3.11 66.79 36.11 25.25 39.01 71.19 93.20 96.51 3.69 14.07 21.57 11.27 1.76 9.14 8.29 7.79 6.53 29.29 6.65 9.96 16.83 47 I8_SR3 SilentIntronRegion 0 11.50 33.31 4.47 44.67 41.98 34.69 44.99 54.51 70.64 70.84 2.72 23.73 37.03 12.95 2.20 9.42 15.63 9.98 7.40 42.14 7.27 16.98 15.70 48 I8_AR4 ActiveIntronRegion 0 1.66 21.32 2.61 22.93 23.71 46.90 27.76 31.10 33.73 46.74 1.38 24.33 46.95 13.33 0.71 4.91 5.35 3.11 5.16 21.91 1.90 25.36 7.50 49 I8_SR4 SilentIntronRegion 0 1.35 19.36 3.10 29.60 27.66 65.53 36.97 26.65 46.18 33.68 5.53 24.68 31.13 15.24 3.01 9.54 22.25 9.47 7.52 42.52 8.30 24.02 12.46 50 I8_AR5 ActiveIntronRegion 0 5.71 44.45 4.74 41.28 38.50 100.28 50.98 34.23 55.01 37.96 8.37 31.50 27.35 14.63 3.94 14.62 28.90 23.36 10.33 51.70 21.92 35.46 27.47 51 I8_SR5 SilentIntronRegion 0 2.12 27.34 3.68 29.38 27.95 103.51 20.15 28.04 39.94 20.39 3.87 28.38 9.38 19.67 2.90 17.83 29.34 6.78 6.37 37.59 4.41 21.76 21.86 52 I8_AR6 ActiveIntronRegion 0 2.43 16.68 2.76 15.47 9.10 53.73 9.60 16.42 21.00 7.34 1.93 11.69 4.46 10.07 1.45 8.77 16.83 4.16 4.62 19.26 3.09 7.40 8.66 53 I8_SR6 SilentIntronRegion 0 3.92 36.54 4.83 48.84 31.82 98.40 51.09 40.84 35.50 22.58 5.11 30.35 23.67 9.32 3.43 11.00 17.46 11.93 6.73 36.54 8.70 35.24 20.18 54 I8_AR7 ActiveIntronRegion 0 17.91 95.19 13.54 76.35 70.34 144.49 51.66 62.68 38.05 41.86 4.78 27.03 48.81 15.07 13.23 9.13 16.56 12.76 14.31 42.71 10.56 52.27 24.41 55 E9_Aa NovelBoundary 0 41.79 321.65 28.80 173.34 166.89 299.20 185.17 122.98 83.51 50.45 17.48 51.02 86.84 54.09 30.16 25.63 38.71 18.94 22.31 93.64 41.08 106.91 64.45 56 ER9a ExonRegion 0 76.31 366.84 58.47 125.36 140.75 403.35 167.81 114.08 134.56 63.99 19.33 54.48 65.53 70.44 45.48 62.97 126.81 154.22 96.62 170.51 94.31 69.24 66.13 57 E9a_E10a KnownJunction 0 159.58 526.62 80.69 190.92 152.55 477.51 177.75 127.08 142.74 95.68 26.22 44.11 18.99 91.35 29.17 47.34 144.65 118.85 48.57 220.07 111.14 110.04 84.85 58 E10_Aa NovelBoundary 0 0.00 32.95 9.28 64.06 10.61 15.96 14.97 32.00 24.28 12.76 2.68 0.00 0.00 0.00 6.30 0.00 0.00 3.73 0.00 10.87 0.00 8.33 4.35 59 ER10a ExonRegion 0 67.91 365.83 72.40 175.87 149.88 474.25 194.87 146.37 146.75 79.40 13.84 34.76 44.37 53.01 44.49 40.32 77.91 73.87 62.31 150.68 43.48 107.61 52.48 60 E10_Da KnownBoundary 1 17.71 260.28 44.29 184.39 94.57 359.57 138.41 123.88 130.03 76.61 6.95 62.42 19.80 45.79 4.45 19.05 31.70 24.37 42.54 150.46 8.96 105.75 23.13 61 ER10b ExonRegion 0 26.10 257.84 82.92 239.59 182.90 636.40 193.02 183.50 146.89 99.08 5.95 49.29 48.22 24.78 26.87 11.43 20.36 30.68 33.61 108.81 7.98 84.87 24.86 62 IG42 Intergenic 0 4.75 5.02 3.63 56.25 75.57 11.04 36.05 62.82 51.84 59.51 5.24 10.29 29.89 23.80 13.81 3.63 16.15 7.18 5.30 19.26 2.46 3.34 2.31 63 IG42_SR2 SilentIntergenicRegion 0 0.61 3.27 0.53 10.42 3.36 6.47 11.02 15.36 8.44 5.32 1.97 4.01 11.41 2.24 0.00 5.52 4.48 3.95 0.92 19.41 5.11 5.11 0.43 64 IG42_AR3 ActiveIntergenicRegion 0 0.89 0.50 0.95 16.88 4.06 7.34 8.47 21.32 12.94 12.48 7.96 6.89 4.44 2.01 0.00 5.15 5.50 8.50 0.69 30.77 6.35 7.19 3.41 65 IG42_SR3 SilentIntergenicRegion 0 0.74 4.01 2.50 16.54 26.56 7.11 14.08 20.59 16.17 12.84 2.78 7.64 10.67 3.17 0.92 1.71 4.97 3.95 2.43 21.56 2.24 4.01 1.35 66 IG42_AR4 ActiveIntergenicRegion 0 11.65 5.95 5.71 76.91 151.80 8.28 46.60 91.42 44.71 67.01 7.96 7.43 12.21 41.39 42.03 4.84 34.14 10.59 4.55 19.97 5.54 3.86 3.31 67 IG42_SR4 SilentIntergenicRegion 0 2.80 1.76 2.04 33.36 85.07 3.46 33.72 56.59 41.85 52.99 5.62 9.92 38.14 25.21 3.76 2.63 12.96 3.95 3.70 11.13 1.60 3.15 1.28 68 IG42_AR5 ActiveIntergenicRegion 0 2.51 1.53 1.27 23.28 51.82 11.53 36.56 33.83 44.26 40.97 5.33 10.08 38.24 23.81 6.06 2.14 12.31 4.79 4.28 13.91 2.26 3.56 1.06 69 IG42_AR6 ActiveIntergenicRegion 0 4.34 2.03 0.86 27.87 64.35 4.03 29.26 52.63 41.75 65.77 3.29 5.84 37.05 25.01 2.03 1.19 0.00 5.91 3.19 10.53 2.75 10.52 0.73 70 IG42_SR5 SilentIntergenicRegion 0 2.81 1.94 1.48 26.33 48.78 7.99 34.97 49.44 40.77 47.69 4.97 5.33 34.47 21.54 1.34 3.42 2.67 4.12 1.82 6.55 3.53 3.14 1.07 71 IG42_AR7 ActiveIntergenicRegion 0 5.50 6.68 8.58 62.50 73.29 18.14 51.70 61.81 60.72 57.71 5.83 11.54 43.43 41.33 36.23 4.70 26.12 11.01 6.71 20.46 3.33 3.36 5.36 72 IG42_SR6 SilentIntergenicRegion 0 2.75 7.39 2.40 71.77 66.43 15.77 40.64 69.49 78.61 83.93 2.95 14.75 54.91 27.56 7.72 5.22 14.95 8.21 4.50 23.27 1.49 3.05 2.94 73 IG42_AR8 ActiveIntergenicRegion 0 13.13 11.58 6.74 160.68 156.27 28.66 70.76 159.46 132.19 160.62 10.89 19.61 42.34 31.47 17.76 4.98 22.18 10.75 19.68 34.58 1.50 4.19 2.26 74 IG42_SR7 SilentIntergenicRegion 0 13.82 11.33 10.78 170.25 150.15 27.68 71.05 191.84 151.66 177.54 18.39 12.69 38.15 35.28 25.73 6.32 33.99 16.53 21.33 23.64 3.76 3.84 3.37