Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LETM2 Gene 0 15.50 45.28 36.63 27.21 38.52 66.32 32.15 24.55 40.78 29.84 7.96 14.43 13.57 10.98 13.36 9.86 14.87 29.75 23.59 45.14 12.23 16.52 16.23 2 297720 Transcript 0 0.00 4.67 0.77 0.00 1.78 1.19 2.01 0.00 3.63 3.38 1.24 0.00 0.00 0.00 6.68 0.00 0.00 4.48 0.00 8.95 0.00 0.00 0.00 3 379957 Transcript 0 6.94 21.10 20.16 16.79 19.90 34.53 13.05 17.30 24.72 18.53 7.73 9.33 7.66 6.28 5.60 8.33 8.94 13.29 8.95 25.57 3.65 13.03 7.43 4 IG44_AR1 ActiveIntergenicRegion 0 1.47 1.04 3.56 1.48 1.54 1.57 2.69 4.41 2.73 2.41 7.82 6.48 2.57 6.69 5.83 4.44 4.70 4.35 2.51 3.69 3.21 2.50 2.86 5 ER1a ExonRegion 0 12.98 42.22 6.18 1.02 33.71 205.44 50.69 4.98 14.84 11.61 3.14 0.00 3.15 5.09 4.16 14.95 7.54 15.11 22.82 30.42 1.68 8.40 21.74 6 E1_Da NovelBoundary 0 0.00 2.76 15.43 7.13 0.00 2.16 3.58 8.42 7.87 5.67 2.68 0.00 0.00 0.00 0.00 4.36 0.00 54.93 15.06 2.62 6.18 2.51 0.00 7 E1a_E2a KnownJunction 0 6.30 11.84 12.86 3.50 16.89 131.74 29.19 13.60 29.25 20.12 0.00 0.00 6.66 0.00 4.57 3.50 0.00 15.21 8.28 7.86 0.00 3.00 11.61 8 I1 Intron 0 1.25 7.36 14.30 7.73 4.25 5.28 4.89 7.23 10.13 4.92 2.00 2.35 1.63 0.99 2.02 1.10 2.44 11.85 4.71 12.81 1.38 3.85 4.45 9 I1_SR1 SilentIntronRegion 0 0.57 1.21 7.20 1.88 0.76 2.80 0.12 2.78 7.59 2.32 1.55 0.84 1.03 0.43 0.77 2.86 1.62 18.12 11.81 14.55 2.98 3.89 7.43 10 I1_SR2 SilentIntronRegion 0 2.13 12.63 21.52 15.03 6.39 7.01 7.87 11.35 14.49 7.10 2.76 4.15 2.78 0.85 2.96 0.95 3.40 8.61 2.63 14.89 0.27 5.40 3.77 11 E2_Aa NovelBoundary 0 11.26 11.97 28.24 9.26 3.23 13.51 8.39 7.64 12.01 2.61 2.00 12.60 0.00 0.00 0.00 0.00 0.00 12.15 3.76 11.51 0.00 0.00 3.41 12 ER2a ExonRegion 0 4.10 12.25 10.91 8.60 8.52 48.36 16.28 9.05 21.30 16.79 8.69 10.37 2.90 2.41 1.54 0.73 8.68 11.91 18.36 19.28 2.75 5.12 4.50 13 E2_Da NovelBoundary 0 7.56 35.91 25.66 10.42 40.75 22.71 24.20 12.77 10.42 12.33 2.68 7.05 6.82 2.47 0.00 4.27 0.00 12.44 9.60 11.89 3.15 9.19 19.97 14 E2a_E3a KnownJunction 0 2.82 11.97 13.22 13.75 12.14 12.32 11.88 9.82 28.44 22.64 11.74 6.90 0.00 9.30 0.00 0.00 17.11 10.36 4.42 22.82 5.00 2.51 7.60 15 E2a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.38 1.85 0.00 1.22 5.10 0.00 0.00 0.00 0.00 13.35 0.00 0.00 3.77 0.00 12.14 0.00 0.00 0.00 16 E3_Aa NovelBoundary 0 2.74 9.27 26.17 17.28 13.50 2.16 29.15 4.52 17.62 12.38 0.00 0.00 0.00 0.00 4.45 3.93 8.42 11.36 0.00 18.98 0.00 2.45 0.00 17 ER3a ExonRegion 0 14.52 23.64 29.89 25.16 16.28 13.42 6.79 19.45 38.08 31.59 17.91 3.91 2.87 12.65 9.19 19.24 18.02 29.79 18.27 53.84 7.32 18.29 16.23 18 E3_Ab KnownBoundary 0 19.93 20.85 44.41 27.97 35.65 15.79 11.88 23.54 44.27 37.82 23.22 0.00 0.00 16.78 25.71 6.75 13.46 44.40 36.05 54.78 3.03 25.04 22.96 19 ER3b ExonRegion 0 14.19 56.90 42.47 23.37 50.80 84.91 38.09 21.87 43.66 33.63 14.73 28.28 15.60 14.57 16.96 9.76 13.68 33.73 36.84 46.39 5.37 15.54 14.17 20 E3_Da NovelBoundary 0 6.15 43.61 32.08 18.28 20.37 2.33 31.49 7.80 13.80 5.35 6.79 25.51 13.64 4.94 4.45 3.85 8.32 8.79 8.09 13.87 0.00 8.27 8.62 21 E3a_E4a KnownJunction 0 3.04 18.09 1.54 1.37 0.00 31.91 4.37 5.18 9.61 3.28 0.00 18.91 13.47 0.00 4.45 8.29 0.00 5.14 4.80 9.01 0.00 5.14 0.00 22 E3a_E5a KnownJunction 0 0.00 9.34 1.54 0.00 3.57 0.00 2.16 0.00 6.05 1.67 2.47 0.00 0.00 0.00 0.00 0.00 0.00 5.18 0.00 5.75 0.00 0.00 0.00 23 I3 Intron 0 5.23 21.89 16.11 9.32 15.82 17.31 14.25 8.18 11.05 7.84 5.12 7.08 8.28 5.48 6.11 3.41 4.95 7.14 4.50 14.64 0.97 6.99 4.40 24 I3_AR1 ActiveIntronRegion 0 5.25 21.97 16.17 9.35 15.87 17.37 14.30 8.21 11.09 7.87 5.13 7.10 8.31 5.50 6.13 3.42 4.97 7.16 4.51 14.69 0.98 7.01 4.42 25 E4_Aa NovelBoundary 0 19.78 32.95 33.50 29.90 37.78 47.59 17.49 9.28 16.44 16.55 7.48 0.00 15.10 9.30 8.90 0.00 4.77 15.88 14.21 26.65 0.00 7.84 11.69 26 ER4a ExonRegion 0 6.79 33.51 17.96 17.60 31.94 43.11 26.17 17.98 21.26 18.42 6.50 10.76 15.31 4.87 9.07 10.03 6.01 10.50 13.49 17.76 2.77 18.40 9.54 27 E4_Da NovelBoundary 0 23.34 38.22 17.39 16.85 36.08 2.73 20.23 14.95 15.39 8.00 0.00 12.60 5.84 0.00 0.00 0.00 0.00 1.91 0.00 14.19 0.00 5.57 3.59 28 E4a_E5a KnownJunction 0 7.56 18.29 38.20 26.07 39.13 71.89 16.03 34.09 26.22 16.73 2.53 6.15 6.66 4.59 5.32 4.10 3.55 10.65 3.76 24.42 3.15 20.82 3.76 29 E5_Aa NovelBoundary 0 7.48 12.43 10.05 13.05 18.93 8.46 18.20 1.77 16.12 12.20 2.21 0.00 0.00 0.00 0.00 0.00 0.00 7.09 0.00 11.57 0.00 9.37 0.00 30 ER5a ExonRegion 0 12.58 37.92 43.10 34.88 44.98 54.64 29.33 37.27 39.66 25.61 3.96 5.15 6.12 6.66 15.22 4.67 7.51 19.47 17.13 39.96 7.14 9.77 6.24 31 E5_Da NovelBoundary 0 3.78 18.81 13.01 8.02 23.26 21.46 7.33 0.00 15.51 5.00 0.00 0.00 0.00 0.00 0.00 16.24 8.70 4.81 0.00 2.56 5.37 11.27 0.00 32 E5a_E6a KnownJunction 0 2.89 76.96 39.74 29.93 55.43 78.25 39.22 27.48 41.23 25.76 9.48 12.60 6.66 9.77 24.35 16.66 3.93 30.01 13.74 55.48 2.66 12.19 0.00 33 E6_Aa NovelBoundary 0 9.04 6.51 9.70 9.09 37.35 5.05 12.98 6.37 14.21 3.68 0.00 0.00 0.00 2.47 0.00 0.00 4.77 0.00 12.89 8.05 6.05 2.57 8.11 34 ER6a ExonRegion 0 14.66 55.30 28.60 28.10 38.80 57.15 33.06 23.73 37.26 25.91 4.15 4.78 7.75 10.50 14.88 8.81 7.16 42.07 11.25 44.42 8.04 9.52 6.71 35 E6_Da NovelBoundary 0 0.00 9.27 5.38 2.06 15.20 0.00 0.00 1.64 2.95 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.70 12.99 3.20 0.00 2.69 4.35 36 E6a_E7a KnownJunction 0 3.48 74.33 38.17 29.47 57.47 42.36 32.95 30.27 32.70 37.39 2.11 6.30 6.17 14.77 23.24 6.92 4.02 37.81 4.71 48.39 5.68 10.96 0.00 37 I6 Intron 0 1.66 5.39 4.05 3.80 5.12 5.42 5.76 1.90 8.16 1.63 0.42 0.69 0.78 0.96 0.55 1.42 2.87 2.44 2.08 6.66 7.37 6.52 10.60 38 I6_AR1 ActiveIntronRegion 0 2.61 4.54 2.94 3.02 6.88 2.51 8.25 4.59 8.06 2.39 1.84 0.00 0.00 1.10 0.00 0.00 0.00 3.19 1.36 11.46 11.27 7.71 11.98 39 I6_SR2 SilentIntronRegion 0 1.67 5.48 4.88 4.31 5.02 6.01 6.47 1.53 8.57 1.67 0.29 0.22 1.09 1.18 0.64 1.98 3.61 2.65 1.54 5.80 7.09 6.65 12.14 40 E7_Aa NovelBoundary 0 3.70 9.60 4.20 8.09 11.54 0.00 0.00 0.00 13.17 1.37 2.68 0.00 0.00 0.00 9.64 4.27 8.32 4.23 0.00 3.26 5.68 7.41 7.34 41 ER7a ExonRegion 0 9.21 47.40 32.27 19.21 42.97 57.25 33.79 20.05 28.53 21.73 3.87 2.49 5.32 8.22 11.94 15.65 6.96 38.02 9.50 43.92 6.17 9.13 13.68 42 E7_Da NovelBoundary 0 0.00 2.70 4.20 8.12 3.74 9.31 0.00 0.00 16.58 2.85 0.00 0.00 0.00 2.35 0.00 0.00 0.00 1.66 0.00 3.26 14.76 7.65 12.12 43 E7a_E8a KnownJunction 0 3.48 30.26 24.48 26.17 34.47 44.92 16.87 12.08 25.78 13.91 4.16 0.00 12.99 2.24 15.20 3.76 7.85 49.99 4.24 50.05 2.53 5.76 10.24 44 I7 Intron 0 3.55 3.72 2.51 3.51 5.31 3.26 5.05 3.01 7.02 2.95 0.00 0.73 1.19 1.01 0.10 1.66 6.38 3.74 3.24 6.49 10.76 7.10 12.40 45 I7_SR1 SilentIntronRegion 0 2.51 3.01 2.17 3.01 5.55 2.72 5.89 3.05 6.55 2.03 0.00 1.06 2.54 0.34 0.61 0.88 3.92 2.45 1.89 7.57 3.92 7.41 7.85 46 I7_AR1 ActiveIntronRegion 0 3.90 5.92 2.16 3.77 7.12 4.27 5.74 3.17 9.61 3.42 0.00 1.10 1.19 1.73 0.00 0.91 8.66 4.17 3.32 7.33 9.56 9.07 13.41 47 I7_SR2 SilentIntronRegion 0 3.69 2.52 2.86 3.52 4.03 2.79 4.31 2.91 5.48 2.97 0.00 0.37 0.74 0.76 0.00 2.44 5.73 3.90 3.67 5.58 13.96 5.70 13.34 48 E8_Aa NovelBoundary 0 9.93 2.83 4.79 2.00 3.65 4.71 3.53 4.93 10.36 5.45 0.00 0.00 0.00 2.47 0.00 4.19 21.97 4.48 4.05 5.18 8.34 24.55 10.93 49 ER8a ExonRegion 0 6.68 30.84 45.68 38.50 23.87 41.89 18.88 26.00 44.08 30.91 4.00 6.95 25.30 10.00 18.73 12.44 11.32 44.07 23.39 48.99 16.43 9.61 10.66 50 E8_Da NovelBoundary 0 3.78 2.63 1.30 8.72 3.90 17.38 0.00 12.08 10.36 2.61 0.00 0.00 6.17 0.00 0.00 4.36 21.51 6.38 4.52 15.60 25.45 5.45 49.85 51 E8a_E9a KnownJunction 0 6.45 23.35 76.08 31.10 38.62 29.59 15.63 30.07 45.28 31.43 2.05 25.36 6.49 7.53 13.72 7.86 4.77 24.00 25.13 59.25 0.00 23.33 0.00 52 I8 Intron 0 7.54 8.58 5.30 5.73 13.72 10.92 11.96 5.36 14.16 4.72 0.50 3.30 3.15 2.02 1.34 4.23 15.05 4.69 6.53 12.06 11.05 12.70 17.24 53 I8_AR1 ActiveIntronRegion 0 0.72 1.38 1.86 1.38 6.37 3.12 0.90 0.88 4.38 2.32 0.66 1.21 1.31 1.83 2.38 1.01 3.37 5.31 7.58 2.89 10.49 4.96 11.98 54 I8_AR3 ActiveIntronRegion 0 8.04 6.82 5.94 5.39 12.57 11.56 11.19 6.19 11.18 3.03 0.00 3.84 2.45 2.70 0.94 8.16 15.73 7.20 5.75 15.54 13.62 12.71 21.75 55 I8_SR2 SilentIntronRegion 0 8.41 10.42 5.69 6.28 14.97 12.02 13.75 5.77 16.95 5.82 0.68 3.26 3.45 1.86 1.40 3.19 16.30 3.74 6.74 12.14 10.49 13.79 16.73 56 I8_AR4 ActiveIntronRegion 0 2.60 2.24 0.00 10.24 19.07 1.60 10.83 1.11 4.21 1.00 0.00 6.55 9.74 0.00 0.00 2.97 15.83 1.80 5.88 6.00 1.02 10.84 1.66 57 E9_Aa NovelBoundary 0 6.96 2.57 12.54 3.10 3.74 4.88 24.82 8.26 21.85 7.25 0.00 0.00 0.00 4.65 0.00 7.69 8.70 2.57 3.58 5.94 10.26 26.51 22.71 58 ER9a ExonRegion 0 39.14 42.66 53.94 41.34 39.53 49.53 28.96 28.21 52.21 36.58 8.27 6.42 15.78 12.15 11.89 13.26 7.60 36.70 17.30 42.53 4.62 24.71 23.21 59 E9_Da NovelBoundary 0 8.96 9.34 0.00 6.96 15.11 18.06 16.83 4.56 8.45 1.53 0.00 0.00 0.00 0.00 0.00 0.00 4.49 0.00 8.28 18.02 8.34 30.56 19.55 60 E9a_E10a KnownJunction 0 70.09 92.94 58.75 60.13 64.86 47.19 54.54 40.87 77.00 37.85 9.63 0.00 32.47 4.94 8.90 16.58 4.58 50.12 17.32 74.66 5.56 11.82 4.35 61 I9 Intron 0 3.34 8.99 3.17 6.09 8.03 4.05 11.71 4.07 9.90 2.70 1.22 5.07 2.96 2.67 1.10 0.47 14.07 1.16 2.51 13.10 6.26 13.49 13.91 62 I9_SR1 SilentIntronRegion 0 3.36 9.05 3.19 6.13 8.08 4.08 11.78 4.09 9.97 2.72 1.23 5.10 2.98 2.69 1.11 0.47 14.16 1.17 2.53 13.18 6.30 13.57 14.00 63 E10_Aa NovelBoundary 0 3.56 9.21 6.65 13.58 15.70 2.90 19.34 13.97 20.80 6.47 0.00 0.00 0.00 5.24 0.00 0.00 48.15 2.11 0.00 13.81 14.76 8.39 7.17 64 ER10a ExonRegion 0 21.43 76.42 54.19 41.88 53.10 98.72 50.48 35.18 51.91 33.22 11.73 16.89 28.92 9.94 16.55 6.26 9.26 17.30 19.24 52.52 7.30 25.70 12.55 65 E10_Da NovelBoundary 0 2.82 15.33 1.83 1.56 17.32 4.60 16.83 5.96 9.46 5.86 0.00 0.00 6.17 2.47 0.00 0.00 8.51 4.15 8.85 6.20 10.87 7.65 23.39 66 E10a_E11a KnownJunction 0 3.26 48.28 45.71 23.71 45.33 110.39 63.77 19.22 29.28 29.52 7.00 6.30 14.77 9.71 26.95 8.20 3.74 15.75 9.51 31.83 5.75 11.02 0.00 67 I10 Intron 0 7.03 9.43 7.20 4.50 9.44 5.71 12.37 5.89 13.37 1.18 0.80 2.96 4.83 2.38 0.85 5.14 17.13 5.54 8.38 14.58 17.83 8.22 29.06 68 I10_SR1 SilentIntronRegion 0 5.35 2.71 6.14 5.31 9.74 2.32 12.33 5.76 6.07 1.16 1.11 3.09 3.50 0.45 0.00 2.32 13.64 1.90 4.78 12.17 7.60 9.14 12.69 69 I10_AR1 ActiveIntronRegion 0 7.49 11.18 7.50 4.31 9.40 6.60 12.42 5.94 15.29 1.19 0.73 2.94 5.19 2.88 1.07 5.88 18.07 6.49 9.33 15.24 20.52 8.01 33.36 70 E11_Aa NovelBoundary 0 21.56 29.86 15.88 5.83 15.37 2.78 15.15 14.17 28.33 3.81 0.00 0.00 0.00 6.83 0.00 3.93 30.95 11.11 3.58 15.34 33.98 11.02 32.10 71 ER11a ExonRegion 1 22.84 42.76 42.26 32.91 36.13 59.58 33.41 31.37 55.79 40.70 4.98 24.35 17.73 15.81 13.14 9.04 37.96 31.58 33.71 63.16 38.81 27.84 35.17 72 IG45 Intergenic 0 11.42 21.75 15.63 13.54 20.58 24.96 19.43 11.49 31.79 12.76 1.19 3.41 4.07 6.62 1.64 11.84 33.80 20.14 13.27 35.35 31.18 18.21 49.19 73 IG45_AR1 ActiveIntergenicRegion 0 11.43 21.77 15.64 13.55 20.60 24.98 19.45 11.50 31.82 12.77 1.19 3.41 4.07 6.62 1.64 11.85 33.83 20.16 13.28 35.38 31.21 18.22 49.23