Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RAB11FIP1 Gene 0 38.28 7.95 9.74 15.42 15.22 17.84 9.92 10.61 16.53 11.43 56.39 19.53 25.20 56.94 43.88 46.12 24.69 9.31 12.41 9.47 4.10 9.70 10.01 2 343853 Transcript 0 0.00 0.00 0.00 0.78 0.00 0.83 0.00 0.00 1.09 0.00 1.05 0.00 0.00 3.89 0.00 6.66 0.00 0.00 0.00 0.00 0.00 0.25 0.00 3 287263 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 330843 Transcript 0 0.00 2.70 0.00 3.83 4.24 4.43 0.00 1.64 11.40 3.73 45.06 37.81 48.21 40.38 23.86 28.80 17.58 1.58 3.95 6.26 9.39 5.63 19.80 5 441762 Transcript 0 0.08 0.02 0.96 0.03 0.43 0.06 0.03 0.02 0.11 0.05 0.41 0.26 0.38 0.41 0.29 0.27 0.17 0.02 0.03 0.04 0.07 0.08 0.15 6 ER1a ExonRegion 0 4.16 0.25 1.49 5.13 2.73 4.08 3.00 4.33 11.24 7.56 41.35 2.26 5.94 51.82 34.59 32.01 17.91 9.91 5.70 5.96 2.87 5.06 6.17 7 E1a_E2a KnownJunction 1 0.00 0.00 6.36 18.08 3.65 33.05 3.62 11.62 24.10 17.57 127.77 10.95 13.64 100.65 61.07 70.15 38.43 12.39 26.73 6.14 2.47 17.08 14.26 8 I1 Intron 0 14.37 2.80 6.22 6.27 9.90 2.33 3.77 8.58 6.87 1.79 4.49 5.49 8.46 2.56 7.93 13.57 6.34 1.52 2.76 1.86 0.31 0.41 2.18 9 I1_AR1 ActiveIntronRegion 0 10.58 0.00 3.85 2.73 5.35 1.83 3.78 4.69 6.18 0.00 7.73 0.00 15.41 2.55 8.70 2.97 9.90 1.06 9.56 2.13 0.00 0.00 0.00 10 I1_SR2 SilentIntronRegion 0 9.98 0.00 4.90 2.73 5.35 1.83 4.16 3.46 5.12 0.00 9.11 0.00 14.07 3.25 10.36 2.97 9.90 0.79 3.64 2.13 0.00 0.00 0.00 11 I1_AR3 ActiveIntronRegion 1 21.55 4.08 8.50 8.84 10.47 2.71 5.86 10.86 10.67 2.85 7.52 6.94 9.30 3.31 13.18 18.87 11.20 2.00 4.55 2.43 0.66 0.00 3.93 12 I1_AR4 ActiveIntronRegion 0 26.41 2.03 10.12 11.20 19.43 3.75 13.41 16.53 11.87 4.69 9.08 0.38 0.00 8.76 3.53 28.30 22.53 3.70 8.31 0.00 2.20 0.00 3.58 13 I1_SR3 SilentIntronRegion 1 23.44 3.56 3.61 8.40 15.86 3.47 5.58 12.11 12.15 2.18 6.11 7.66 8.40 3.21 13.62 22.30 10.94 1.01 3.95 2.50 0.19 0.98 2.99 14 I1_AR7 ActiveIntronRegion 1 26.13 3.36 14.85 5.56 28.30 0.92 5.40 18.15 7.32 2.29 7.66 10.16 22.19 3.25 15.73 12.92 10.16 0.00 0.00 5.16 0.00 0.00 8.13 15 I1_AR8 ActiveIntronRegion 1 50.18 10.65 24.40 17.89 50.99 4.60 18.15 28.66 19.07 1.00 11.18 15.74 34.54 3.51 25.27 16.21 9.90 0.00 5.97 4.22 0.00 0.45 7.74 16 I1_AR9 ActiveIntronRegion 0 88.81 7.61 15.86 18.00 42.97 4.48 11.90 28.20 14.11 2.91 8.04 16.67 17.00 4.33 17.50 10.90 5.61 0.05 5.73 4.47 0.00 0.66 3.65 17 I1_AR10 ActiveIntronRegion 0 28.04 4.41 15.62 11.36 37.57 6.19 5.52 23.48 17.50 0.00 9.02 6.67 14.66 2.64 11.24 7.06 11.55 1.85 9.16 0.80 0.00 0.00 2.69 18 I1_AR11 ActiveIntronRegion 1 28.96 2.36 12.39 15.28 24.52 2.25 4.11 18.18 14.20 1.08 5.39 10.47 17.01 0.86 12.36 13.62 12.93 1.10 7.38 3.42 0.00 0.67 2.70 19 I1_AR14 ActiveIntronRegion 0 19.63 3.45 5.35 3.77 15.30 3.12 4.08 6.77 4.55 2.91 2.99 9.49 15.56 2.24 8.88 9.19 8.67 0.71 3.93 1.64 0.00 0.64 0.91 20 I1_SR5 SilentIntronRegion 0 18.62 2.99 4.60 7.41 14.52 2.17 5.08 14.02 8.50 2.55 2.70 8.97 9.53 2.56 3.69 16.31 6.20 0.85 4.69 2.35 0.00 0.38 2.70 21 I1_AR15 ActiveIntronRegion 0 12.12 1.67 4.28 8.40 9.33 2.66 3.39 8.73 5.74 0.25 6.31 6.62 14.35 2.63 8.30 12.23 3.24 0.25 0.00 0.29 0.00 0.57 1.29 22 I1_SR6 SilentIntronRegion 0 25.28 0.02 1.93 10.25 12.65 3.37 5.50 14.11 10.93 0.65 4.08 5.65 21.92 1.50 5.64 8.40 0.68 0.00 0.00 0.93 0.00 0.00 1.28 23 I1_AR16 ActiveIntronRegion 0 14.23 3.89 10.75 13.33 27.25 5.17 6.76 15.92 14.15 1.49 4.99 9.62 20.09 1.96 7.52 13.55 6.13 1.92 0.55 1.19 0.00 0.00 1.15 24 I1_AR17 ActiveIntronRegion 0 14.27 0.00 9.64 7.96 9.84 3.55 2.52 8.36 16.10 0.00 4.61 12.85 9.68 2.83 10.67 22.24 4.90 0.00 5.03 0.55 0.00 3.76 3.69 25 I1_SR7 SilentIntronRegion 0 10.21 2.50 7.26 6.57 9.39 2.80 3.25 8.59 7.07 1.66 4.45 3.46 3.98 2.47 7.52 13.81 7.96 1.55 3.42 1.51 0.68 0.62 3.11 26 I1_AR18 ActiveIntronRegion 0 13.73 3.09 10.12 5.58 9.21 4.17 3.43 11.34 9.57 1.48 1.80 7.19 13.09 2.91 8.87 8.16 6.99 0.36 3.75 1.84 0.00 0.43 1.84 27 I1_SR9 SilentIntronRegion 0 12.91 3.96 6.44 8.43 7.18 3.22 3.03 9.97 6.21 3.81 3.85 3.74 5.03 4.25 5.34 19.66 5.61 2.24 1.78 2.14 0.00 0.15 4.29 28 I1_AR27 ActiveIntronRegion 0 7.02 3.42 1.29 5.95 4.93 0.00 2.72 4.73 5.85 2.29 2.85 5.70 6.42 4.87 5.80 23.62 2.78 6.81 0.00 0.11 0.00 0.00 2.94 29 I1_AR28 ActiveIntronRegion 0 17.30 6.55 9.08 7.80 10.38 0.97 1.55 10.30 7.36 2.37 5.10 6.17 7.63 2.54 7.78 17.37 5.42 3.41 2.44 2.75 0.78 0.37 2.51 30 I1_SR10 SilentIntronRegion 0 10.98 1.49 6.91 4.09 7.36 1.90 5.50 5.19 4.16 1.25 5.07 5.45 9.86 3.06 6.90 12.34 4.85 0.85 1.19 1.95 0.13 0.64 0.90 31 I1_AR29 ActiveIntronRegion 0 8.26 1.49 5.79 5.44 2.91 2.69 4.82 5.03 5.60 2.09 7.31 5.22 12.93 1.38 9.63 16.30 8.82 4.02 4.62 3.12 0.00 0.25 2.51 32 I1_AR31 ActiveIntronRegion 0 14.46 1.96 1.19 1.97 0.87 1.20 0.00 2.53 1.20 0.00 1.90 3.50 6.10 2.58 5.08 11.62 4.32 2.70 1.04 0.00 0.00 1.36 0.96 33 E2_Aa NovelBoundary 0 7.19 0.00 13.01 5.03 15.03 2.16 2.12 6.41 11.86 0.00 4.63 0.00 0.00 0.00 5.81 4.27 4.77 0.00 4.24 0.00 0.00 0.00 4.35 34 ER2a ExonRegion 0 34.03 5.09 11.42 18.83 20.12 25.41 14.52 19.28 46.41 25.27 185.67 80.57 114.12 195.10 100.95 156.97 85.39 26.84 33.70 28.55 12.87 25.97 28.05 35 E2a_E3a KnownJunction 1 10.08 9.27 9.82 28.77 42.95 21.64 16.65 15.32 35.56 31.46 161.88 88.98 111.03 266.47 140.18 214.13 48.62 57.54 30.49 25.44 3.15 37.23 38.58 36 E3_Aa NovelBoundary 0 10.74 0.00 1.27 1.47 0.00 0.00 13.34 3.33 5.38 0.00 5.21 0.00 0.00 2.83 13.35 16.83 0.00 2.07 0.00 0.00 0.00 0.00 0.00 37 ER3a ExonRegion 0 24.72 7.77 10.92 16.42 18.24 29.67 18.65 15.62 36.60 24.01 185.74 61.79 94.96 181.00 91.02 150.06 93.24 26.71 26.92 25.01 13.80 21.27 27.41 38 E3a_E4b KnownJunction 0 0.00 2.70 0.00 3.83 4.24 4.43 0.00 1.64 11.40 3.73 45.06 37.81 48.21 40.38 23.86 28.80 17.58 1.58 3.95 6.26 9.39 5.63 19.80 39 E3a_E5a KnownJunction 0 24.52 14.73 7.16 10.16 14.43 26.69 8.08 14.66 26.74 7.55 145.67 40.06 30.68 84.64 52.41 78.01 66.85 9.99 0.00 19.49 17.42 8.82 21.60 40 E4_Aa NovelBoundary 0 37.64 0.00 1.30 13.52 3.48 2.61 5.87 7.52 5.93 0.00 20.16 6.00 12.50 4.65 4.45 7.52 4.77 0.00 0.00 0.00 0.00 0.00 3.50 41 ER4a ExonRegion 0 0.08 0.02 0.96 0.03 0.43 0.06 0.03 0.02 0.11 0.05 0.41 0.26 0.38 0.41 0.29 0.27 0.17 0.02 0.03 0.04 0.07 0.08 0.15 42 E4_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 3.82 0.00 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER4b ExonRegion 0 0.99 0.26 0.35 0.26 0.19 0.79 0.57 0.27 0.88 0.61 3.27 0.76 2.21 4.45 2.07 2.88 1.91 0.57 0.90 0.56 0.29 0.79 0.81 44 E4a_E5a KnownJunction 0 7.56 2.89 0.00 3.50 4.33 9.43 4.50 0.00 7.12 5.53 36.75 0.00 12.66 33.73 13.23 22.99 20.76 10.74 3.86 2.88 5.31 0.00 11.61 45 ER5a ExonRegion 0 21.57 14.72 12.92 20.12 8.52 38.29 21.77 21.69 34.92 15.78 154.24 34.00 65.02 146.51 73.68 138.46 54.84 25.24 33.81 16.47 16.84 27.51 24.19 46 E5_Da KnownBoundary 0 3.78 0.00 0.00 3.63 0.00 0.00 0.00 0.00 1.74 1.53 7.84 0.00 0.00 10.07 0.00 16.24 0.00 2.57 0.00 0.00 0.00 2.94 0.00 47 E5a_E6a KnownJunction 0 36.08 20.00 11.92 30.77 7.47 42.02 36.88 31.46 46.12 27.32 255.64 79.38 198.20 216.20 155.39 183.11 114.26 35.07 76.05 37.14 29.78 43.48 29.11 48 ER5b ExonRegion 0 0.00 0.00 0.00 0.78 0.00 0.83 0.00 0.00 1.09 0.00 1.05 0.00 0.00 3.89 0.00 6.66 0.00 0.00 0.00 0.00 0.00 0.25 0.00 49 E5_Db NovelBoundary 1 9.33 3.16 1.21 3.53 7.98 4.77 10.25 8.42 7.20 0.00 14.21 0.00 0.00 41.38 47.96 73.14 8.23 0.00 22.78 2.56 0.00 5.57 7.51 50 I5 Intron 0 12.71 2.07 2.47 3.76 6.77 3.56 4.07 5.41 4.07 1.70 10.61 6.41 14.72 7.04 9.92 12.08 7.01 1.70 1.37 1.87 0.25 0.71 2.72 51 I5_AR1 ActiveIntronRegion 0 12.88 0.56 1.01 1.13 1.48 0.51 2.94 5.71 3.57 1.42 6.43 10.31 7.49 6.96 10.25 20.59 6.40 0.76 1.77 0.00 1.22 0.00 2.44 52 I5_SR1 SilentIntronRegion 0 12.71 2.20 2.61 4.00 7.24 3.84 4.17 5.39 4.12 1.72 10.99 6.07 15.37 7.05 9.89 11.33 7.07 1.79 1.33 2.04 0.16 0.77 2.75 53 E6_Aa NovelBoundary 0 84.31 9.93 13.57 5.26 14.52 29.47 28.00 8.63 13.86 3.25 4.05 6.15 6.82 9.65 18.91 40.42 11.31 4.81 0.00 3.26 0.00 2.57 4.35 54 ER6a ExonRegion 0 3.63 1.95 0.64 1.29 0.73 2.73 1.96 1.51 1.85 0.93 7.60 3.72 5.71 9.31 8.46 7.52 2.78 1.16 1.95 1.42 0.78 0.99 2.08 55 E6_Da KnownBoundary 0 34.38 15.85 4.49 1.83 7.47 16.69 7.86 0.00 4.51 0.00 0.00 0.00 0.00 2.41 0.00 11.79 12.44 5.84 0.00 0.00 0.00 0.00 3.84 56 ER6b ExonRegion 0 148.82 27.90 34.66 54.42 54.46 54.18 28.03 32.09 39.02 30.44 92.31 31.99 26.72 88.83 107.54 72.48 34.85 17.46 28.99 19.74 6.02 23.11 19.47