Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AP3M2 Gene 0 69.20 134.62 84.71 104.09 88.79 242.12 90.41 81.06 82.10 84.26 102.02 85.14 94.85 140.44 85.85 123.22 102.41 93.00 104.77 113.59 37.32 41.30 45.57 2 396926 Transcript 1 146.47 287.19 25.99 50.88 124.36 664.16 213.62 39.84 68.14 56.28 225.27 0.00 0.00 132.73 48.09 234.04 192.33 133.48 187.96 145.99 65.92 78.75 131.63 3 174653 Transcript 0 0.93 6.85 0.19 0.36 2.82 5.39 2.26 0.32 1.78 2.49 4.02 7.09 10.53 6.10 0.80 10.11 3.04 3.57 2.19 3.32 6.75 0.57 3.69 4 ER1a ExonRegion 0 16.34 41.74 3.18 6.18 15.55 88.01 27.49 6.29 8.80 7.67 30.27 0.08 0.00 18.07 8.21 38.41 25.93 20.60 26.76 22.18 12.66 7.64 14.21 5 E1a_E2a KnownJunction 0 0.00 2.50 0.00 0.00 3.23 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 2.18 0.00 0.00 0.00 0.00 0.00 0.00 9.39 0.00 0.00 6 E1a_E2b KnownJunction 1 146.47 287.19 25.99 50.88 124.36 664.16 213.62 39.84 68.14 56.28 225.27 0.00 0.00 132.73 48.09 234.04 192.33 133.48 187.96 145.99 65.92 78.75 131.63 7 ER2a ExonRegion 0 1.87 11.20 0.38 0.72 2.41 10.79 4.52 0.64 3.56 3.96 8.03 14.18 21.06 10.03 1.59 20.22 6.08 7.14 4.37 6.63 4.10 1.14 7.37 8 E2_Ab KnownBoundary 0 0.00 20.46 0.00 1.56 0.00 2.78 0.00 0.00 3.30 6.04 7.74 6.30 27.27 12.18 0.00 8.29 4.77 6.18 4.80 2.36 0.00 0.00 0.00 9 ER2b ExonRegion 0 15.19 57.02 22.77 32.78 28.44 113.89 42.20 42.23 53.86 49.11 85.00 39.48 39.27 103.46 32.37 114.32 95.19 61.65 79.65 91.88 36.64 32.37 48.33 10 E2a_E3a KnownJunction 1 36.45 131.42 23.86 28.47 15.20 114.99 31.71 42.22 55.01 46.90 94.34 42.01 13.47 120.43 32.88 88.44 76.20 45.89 55.53 89.87 27.24 41.27 32.10 11 I2 Intron 0 5.48 13.94 5.08 7.22 6.93 11.75 10.85 7.22 7.88 6.48 16.84 31.67 57.91 26.37 6.32 19.75 22.24 10.31 10.73 20.20 3.94 6.04 4.77 12 I2_AR1 ActiveIntronRegion 0 4.91 9.43 6.35 1.18 1.55 4.25 2.30 1.49 3.20 0.00 6.72 12.99 15.67 25.58 3.56 15.50 21.04 6.40 16.61 16.03 3.81 3.62 5.11 13 I2_SR1 SilentIntronRegion 0 4.64 15.02 5.55 10.48 8.82 9.93 15.71 7.29 10.57 6.59 16.53 36.95 45.04 27.87 6.95 20.55 32.31 12.40 10.09 24.13 3.21 6.08 3.33 14 I2_AR2 ActiveIntronRegion 0 6.67 21.37 7.25 14.04 7.31 24.85 18.30 8.98 13.27 11.89 31.02 42.86 92.98 35.17 11.96 40.10 33.34 22.98 20.08 28.27 5.96 11.20 9.39 15 I2_SR2 SilentIntronRegion 0 5.41 10.61 3.83 3.27 6.35 7.54 6.09 6.89 4.70 4.62 11.69 25.96 52.13 21.97 3.80 10.93 12.92 4.18 6.52 15.27 3.42 3.99 3.42 16 E3_Aa NovelBoundary 1 20.89 8.55 11.38 5.86 15.79 0.00 23.54 15.28 7.32 13.43 10.32 44.71 52.76 21.72 13.97 27.43 13.18 7.25 24.94 18.28 2.47 8.94 8.71 17 ER3a ExonRegion 0 47.71 137.82 44.57 63.12 39.92 118.94 51.47 65.11 65.25 72.88 109.44 84.90 88.92 164.41 56.96 116.60 114.32 89.61 83.89 119.74 51.53 39.97 43.09 18 E3a_E4a KnownJunction 0 37.71 147.34 86.93 82.01 31.32 185.40 81.30 86.50 71.90 66.99 86.44 127.99 108.27 153.04 50.19 134.41 131.56 130.45 88.47 135.31 33.11 36.74 31.76 19 I3_AR1 ActiveIntronRegion 0 12.15 22.31 8.61 5.37 7.80 4.72 12.65 4.60 3.66 1.90 2.40 7.26 21.56 3.29 3.09 2.16 8.78 1.78 3.25 7.26 0.53 1.51 5.68 20 ER4a ExonRegion 0 33.39 107.16 72.23 102.28 76.18 198.86 80.71 84.24 95.37 81.14 125.75 109.81 91.22 201.45 78.42 157.24 124.55 171.41 154.35 163.83 57.74 61.46 70.84 21 E4_Da NovelBoundary 0 32.08 51.18 12.03 17.05 11.71 15.84 29.63 15.77 16.58 13.89 10.48 25.36 34.90 49.91 28.68 35.29 23.56 4.64 3.86 43.14 3.03 2.94 0.00 22 E4a_E5a KnownJunction 0 30.75 91.56 92.31 99.45 57.47 263.88 65.76 99.07 96.82 89.42 127.56 102.33 61.68 237.21 91.72 193.54 89.76 177.67 245.56 156.41 48.56 73.42 54.55 23 E5_Aa NovelBoundary 0 0.00 15.26 25.04 18.68 51.61 23.17 23.80 11.71 6.16 12.79 5.05 25.21 0.00 22.66 15.33 37.00 21.69 11.48 6.96 18.98 7.91 2.76 3.50 24 ER5a ExonRegion 0 34.70 137.81 54.46 64.86 57.62 189.18 70.08 80.57 85.52 70.28 154.05 81.76 87.75 163.85 91.52 139.31 132.00 172.57 127.34 148.54 68.21 36.87 41.22 25 E5a_E6a KnownJunction 1 25.04 172.01 43.35 46.85 59.93 167.23 84.22 61.24 83.22 51.33 129.03 32.26 92.53 132.44 96.17 102.62 124.17 111.05 108.05 133.65 61.04 34.17 47.80 26 I5_AR1 ActiveIntronRegion 0 13.20 10.17 10.68 4.09 18.99 5.50 10.65 13.83 7.47 6.17 15.37 2.68 5.14 25.44 7.18 27.74 11.16 6.42 19.11 9.73 5.77 1.39 3.92 27 ER6a ExonRegion 0 36.98 131.62 73.47 69.86 63.00 229.74 73.01 68.40 82.67 81.34 145.23 79.77 117.50 179.77 79.81 163.56 141.37 174.20 135.00 139.42 63.22 42.60 58.23 28 E6a_E7a KnownJunction 0 38.82 56.63 40.74 75.71 71.14 275.35 79.76 38.94 78.62 76.91 120.61 29.26 94.64 134.56 79.12 125.52 126.79 186.17 118.87 144.45 49.79 37.60 41.74 29 I6 Intron 0 12.90 20.13 16.37 9.76 15.93 11.58 15.20 6.65 6.47 9.56 6.79 14.74 43.09 21.84 12.16 21.53 17.05 4.62 8.23 10.99 3.16 3.74 5.69 30 I6_AR1 ActiveIntronRegion 0 12.87 25.33 18.41 10.84 16.66 11.15 16.10 9.16 8.73 10.14 6.88 18.12 37.72 22.38 11.21 20.71 17.13 4.64 11.33 16.09 5.23 4.63 6.97 31 I6_SR1 SilentIntronRegion 0 15.55 13.40 12.79 7.61 10.24 7.96 14.10 4.41 5.98 8.16 4.96 8.25 39.71 19.72 10.50 21.45 13.89 6.58 1.58 5.63 1.62 4.63 7.06 32 I6_AR2 ActiveIntronRegion 0 11.45 16.54 15.62 9.52 18.46 14.56 14.63 4.26 3.38 9.64 7.85 13.72 53.71 22.51 14.71 23.03 19.02 3.43 7.65 6.62 0.99 1.85 2.94 33 E7_Aa NovelBoundary 1 10.67 23.94 35.60 23.07 4.33 20.73 43.41 11.30 17.65 14.59 27.38 24.76 68.66 36.67 19.66 44.52 34.32 16.00 27.95 43.08 2.90 8.94 8.02 34 ER7a ExonRegion 0 34.91 93.73 69.27 71.89 72.50 217.80 72.90 64.71 83.54 86.28 116.64 80.20 126.88 204.66 102.35 174.50 128.80 181.64 154.25 132.04 59.51 44.90 54.05 35 E7a_E8a KnownJunction 0 38.67 94.52 54.70 58.73 95.25 257.47 107.89 52.82 55.06 70.00 102.71 43.21 86.68 174.47 105.20 175.51 142.50 98.45 82.92 83.16 57.58 43.17 35.17 36 ER8a ExonRegion 0 60.47 128.13 73.70 93.96 91.07 272.17 81.46 73.99 105.08 97.54 126.25 91.28 85.00 218.40 100.30 205.12 144.28 166.49 175.22 134.72 64.96 56.27 67.81 37 E8a_E9a KnownJunction 0 64.31 112.22 50.18 94.96 62.90 223.96 98.22 75.25 72.16 84.19 72.86 86.28 46.59 196.25 77.88 169.96 110.52 87.92 92.14 105.91 31.57 50.15 30.73 38 ER9a ExonRegion 0 93.85 161.91 109.98 135.08 114.08 293.69 112.04 98.10 92.23 97.79 102.37 98.96 109.21 137.94 102.00 118.27 100.25 79.36 103.19 116.37 30.96 43.66 44.07 39 IG22_SR1 SilentIntergenicRegion 0 4.37 7.13 8.75 8.62 7.84 7.75 9.93 9.92 9.39 8.66 1.47 5.54 4.74 4.81 7.50 6.55 10.25 5.82 17.45 10.41 0.36 2.95 9.58 40 IG22_AR1 ActiveIntergenicRegion 0 0.00 6.10 11.03 4.09 11.47 12.84 11.16 15.06 8.29 5.73 0.00 0.00 6.70 6.50 11.19 12.74 5.19 3.70 22.30 13.98 4.41 0.60 5.87 41 IG22_AR2 ActiveIntergenicRegion 0 5.54 4.65 5.08 5.64 7.44 7.49 8.87 16.00 6.62 6.70 2.84 5.04 5.05 2.89 7.23 7.29 1.62 5.25 14.06 8.00 0.36 2.04 9.60