Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF596 Gene 0 20.13 18.29 14.20 31.63 41.40 73.09 23.51 31.66 35.59 25.96 5.38 13.26 5.86 8.91 4.66 12.03 16.44 11.81 12.41 26.12 5.87 10.34 4.30 2 320552 Transcript 0 0.42 0.36 0.16 0.28 0.26 0.26 0.01 0.00 0.00 0.00 0.43 0.00 0.00 0.20 0.21 0.11 0.46 0.38 0.44 0.00 0.31 0.00 0.00 3 308811 Transcript 0 4.66 0.00 0.98 2.45 0.00 1.10 0.53 0.00 0.00 0.00 0.00 4.33 0.00 0.00 1.45 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 382859 Transcript 0 0.00 0.00 0.00 1.37 0.00 0.00 0.00 1.81 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 4.11 0.00 0.00 7.54 0.00 0.00 0.00 5 398612 Transcript 0 0.00 0.04 0.21 5.33 2.27 5.47 0.06 0.58 3.65 1.52 0.55 0.00 0.00 1.68 4.19 2.95 0.92 4.69 1.46 2.52 0.57 2.42 0.86 6 ER1a ExonRegion 0 0.83 0.71 0.32 0.57 0.53 0.52 0.01 0.00 0.00 0.00 0.87 0.00 0.00 0.39 0.41 0.23 0.92 0.77 0.89 0.00 0.61 0.00 0.00 7 E1_Ab KnownBoundary 0 0.00 0.00 1.77 0.00 3.99 2.21 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 E1_Ac KnownBoundary 0 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.93 0.00 2.32 0.00 0.00 0.00 0.00 3.84 9 ER1b ExonRegion 0 5.29 4.07 1.23 0.00 2.68 9.17 1.32 0.00 0.00 0.00 1.93 0.00 0.00 1.62 2.90 2.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E1_Da KnownBoundary 0 6.74 0.00 0.00 1.53 11.04 18.11 0.00 0.00 1.79 3.36 2.42 0.00 0.00 4.89 0.00 7.26 3.83 9.20 4.80 5.31 6.30 3.12 11.87 11 E1a_E2a KnownJunction 0 6.82 5.59 1.33 1.37 11.80 91.48 22.21 0.00 1.79 1.61 0.00 0.00 0.00 15.36 0.00 0.00 9.54 2.40 7.72 0.00 6.30 5.63 8.11 12 ER1c ExonRegion 0 6.76 4.59 1.58 0.79 11.48 53.06 12.86 0.72 1.27 2.07 2.43 0.00 0.00 10.79 0.75 6.04 8.09 5.30 4.32 2.20 8.25 5.11 7.39 13 ER1d ExonRegion 0 1.16 1.49 1.64 4.79 5.40 15.34 4.52 2.81 1.80 3.45 4.68 0.87 0.00 3.89 4.48 4.95 8.61 12.70 3.37 4.84 8.18 2.54 3.19 14 E1_Db KnownBoundary 0 0.00 0.00 5.38 15.45 0.00 0.00 0.00 2.46 1.42 4.38 7.58 0.00 0.00 8.48 5.56 11.71 8.79 27.86 26.54 0.00 5.68 2.63 0.00 15 E1b_E2a KnownJunction 0 0.00 0.00 0.00 1.37 0.00 0.00 0.00 1.81 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 4.11 0.00 0.00 7.54 0.00 0.00 0.00 16 ER1e ExonRegion 0 0.00 0.09 0.42 6.52 1.15 3.27 0.11 1.16 3.16 1.49 1.10 0.00 0.00 3.36 8.37 5.90 1.84 9.37 2.91 2.04 1.13 1.96 1.72 17 E1c_E2a KnownJunction 0 0.00 0.00 0.00 4.13 3.40 7.67 0.00 0.00 4.14 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.00 0.00 2.88 0.00 18 I1 Intron 0 19.57 15.15 11.89 47.39 41.47 31.86 22.46 22.49 29.98 19.33 10.83 20.05 10.30 10.90 5.35 12.47 12.73 13.94 11.75 24.76 7.52 10.98 4.97 19 I1_SR2 SilentIntronRegion 0 16.75 8.66 14.03 55.22 77.94 63.53 40.63 26.63 40.40 37.61 15.63 63.36 18.21 13.17 8.98 16.43 16.19 13.59 10.86 42.32 2.73 21.91 10.04 20 I1_AR3 ActiveIntronRegion 0 18.43 16.23 12.87 56.74 49.28 48.46 27.50 30.64 42.43 28.84 16.42 26.50 13.50 19.55 9.46 21.36 23.25 31.86 22.56 46.40 21.93 13.77 9.11 21 I1_SR3 SilentIntronRegion 0 20.68 33.79 20.78 73.60 39.11 49.02 26.48 29.12 53.58 33.57 19.03 45.79 15.33 24.92 11.61 26.06 18.79 39.16 15.68 56.55 15.51 11.62 8.13 22 I1_AR4 ActiveIntronRegion 0 44.17 22.28 30.66 100.68 70.45 52.51 41.05 37.72 55.41 36.62 26.21 40.07 23.43 23.51 9.74 24.08 21.18 26.30 18.99 46.80 13.56 23.47 10.34 23 I1_SR4 SilentIntronRegion 0 18.76 15.17 8.22 51.76 44.53 25.67 28.02 22.24 30.19 21.36 7.22 23.64 12.07 8.31 4.92 7.82 9.53 6.58 8.36 22.19 1.72 11.51 2.42 24 I1_AR5 ActiveIntronRegion 0 15.55 19.63 11.92 61.60 48.56 28.37 24.44 24.91 26.88 19.37 3.01 17.05 8.32 6.77 3.00 7.32 6.73 3.39 8.52 16.17 1.13 10.04 2.43 25 I1_SR5 SilentIntronRegion 0 13.56 10.77 5.09 35.26 35.33 33.95 12.21 28.47 32.36 21.18 9.60 19.35 0.00 2.66 3.76 2.32 23.73 8.31 4.68 23.57 3.62 3.26 7.43 26 I1_AR6 ActiveIntronRegion 0 19.26 12.03 8.63 26.81 36.97 27.27 17.30 23.74 28.76 13.18 10.19 8.03 3.95 6.78 4.53 14.58 18.92 21.22 15.80 23.52 10.96 6.07 4.72 27 I1_SR6 SilentIntronRegion 0 7.96 18.18 2.97 11.10 12.26 14.91 8.45 13.27 10.88 5.25 3.03 7.53 5.69 6.08 1.83 8.86 8.48 3.59 1.59 8.03 3.26 4.27 1.03 28 I1_AR7 ActiveIntronRegion 0 15.20 37.16 5.72 26.07 43.51 46.55 19.53 24.43 27.38 10.87 8.34 15.10 5.27 8.48 3.14 10.56 9.19 9.23 8.36 14.44 7.37 8.23 1.54 29 I1_SR7 SilentIntronRegion 0 5.81 10.33 2.48 21.60 17.01 35.42 7.68 16.67 24.74 10.30 3.93 11.82 0.00 6.05 0.00 14.29 4.01 6.83 13.58 15.72 3.55 10.19 2.38 30 I1_AR8 ActiveIntronRegion 0 8.13 22.02 0.00 6.39 18.69 29.47 6.01 7.20 6.43 2.99 0.68 4.98 1.35 2.74 0.00 8.31 3.46 3.53 13.35 5.95 4.62 5.09 2.05 31 E2_Aa NovelBoundary 0 0.00 8.02 1.63 7.46 18.34 32.59 6.40 14.38 5.90 9.43 0.00 0.00 0.00 2.30 4.45 0.00 0.00 6.26 0.00 10.74 6.30 6.25 0.00 32 ER2a ExonRegion 0 11.92 23.77 1.94 18.16 37.05 134.17 42.57 10.51 23.95 19.21 6.35 8.66 2.51 12.92 3.35 14.97 16.11 17.75 12.21 30.52 15.43 10.81 7.90 33 E2_Da NovelBoundary 0 0.00 3.03 0.00 1.56 15.79 0.00 2.16 0.00 0.00 3.17 4.63 0.00 0.00 0.00 0.00 0.00 13.09 4.23 0.00 0.00 0.00 0.00 0.00 34 E2a_E3a KnownJunction 0 7.56 11.31 1.39 25.84 19.19 57.98 12.19 9.28 30.67 35.11 4.69 0.00 0.00 13.07 4.45 11.79 13.00 24.42 14.12 24.48 9.02 2.94 7.43 35 ER3a ExonRegion 0 8.25 12.03 10.94 32.53 37.61 49.92 17.39 17.00 35.65 36.43 14.11 2.59 7.98 18.13 8.64 19.87 21.78 30.38 20.22 32.97 14.80 5.50 4.25 36 E3a_E4a KnownJunction 0 5.93 9.01 18.89 41.35 37.78 41.06 7.77 21.69 63.45 36.08 2.68 5.85 0.00 19.13 6.18 21.02 26.27 23.26 17.51 47.94 13.22 11.51 4.01 37 E3a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER4a ExonRegion 0 12.32 16.20 9.72 38.14 37.14 64.97 16.34 19.67 42.80 31.61 5.57 12.68 4.63 13.81 7.56 13.23 23.42 31.63 11.19 36.17 8.26 11.83 13.49 39 E4a_E5a KnownJunction 0 19.63 15.26 11.29 37.09 56.20 150.94 31.49 32.41 41.75 21.87 7.58 18.61 13.64 9.48 4.70 12.99 30.48 19.36 26.17 39.05 11.55 17.51 16.22 40 ER5a ExonRegion 0 18.79 38.03 16.85 35.83 71.86 179.62 56.05 34.17 49.85 24.22 9.73 16.12 5.65 13.23 5.42 22.95 26.77 26.58 28.36 32.38 5.84 14.21 4.71 41 E5a_E6a KnownJunction 0 32.82 31.90 12.24 54.54 71.82 106.59 41.91 32.12 34.35 32.96 4.95 6.30 0.00 10.01 11.50 22.81 17.48 23.38 17.13 36.50 6.30 3.12 0.00 42 ER6a ExonRegion 0 19.72 20.01 14.01 52.29 45.55 92.27 34.03 30.60 39.05 33.08 4.83 19.68 3.84 14.32 5.28 25.26 19.66 23.98 16.65 28.24 8.76 14.11 2.80 43 E6_Ab KnownBoundary 0 3.56 20.72 17.36 56.90 46.60 88.02 43.68 33.02 45.14 40.64 2.21 39.16 0.00 4.94 6.18 28.88 24.50 20.69 21.08 17.58 11.12 29.15 8.45 44 ER6b ExonRegion 0 30.59 19.48 16.40 41.06 59.86 105.88 33.22 44.79 53.49 37.48 6.73 18.63 8.10 11.47 6.96 18.56 23.04 14.63 17.14 40.45 7.76 14.77 7.01 45 E6_Da KnownBoundary 0 72.53 30.78 23.57 63.93 42.36 83.02 35.73 43.99 60.82 40.45 4.84 12.60 20.45 14.77 4.45 0.00 25.15 13.76 21.27 37.20 0.00 39.68 4.10 46 ER6c ExonRegion 0 20.45 24.53 20.12 34.29 37.52 54.86 19.18 36.28 30.96 23.27 3.63 14.78 6.46 6.38 1.88 5.77 12.34 4.36 9.51 18.46 2.10 9.51 1.18 47 ER6d ExonRegion 0 4.66 0.00 0.98 2.45 0.00 1.10 0.53 0.00 0.00 0.00 0.00 4.33 0.00 0.00 1.45 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 IG3_AR5 ActiveIntergenicRegion 0 4.29 10.63 2.51 49.19 3.03 0.00 0.75 1.63 4.81 1.73 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 2.27 0.00 0.00 0.00 49 IG3_AR9 ActiveIntergenicRegion 0 0.89 3.17 3.99 11.66 11.69 20.47 5.18 23.16 17.12 18.67 0.60 0.00 0.00 0.69 0.62 0.00 0.41 3.50 0.60 4.91 3.85 12.23 7.52