Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SOX7 Gene 0 35.91 9.02 56.13 26.20 22.57 25.90 15.94 29.18 29.31 21.78 33.80 22.83 12.13 40.74 47.98 25.45 32.30 13.76 19.12 13.11 12.39 17.84 13.50 2 314787 Transcript 0 59.25 27.98 108.84 61.79 39.58 38.90 29.94 32.07 18.42 29.22 116.33 101.15 42.18 140.20 154.04 74.60 124.29 33.14 48.39 33.37 31.87 39.06 25.15 3 354846 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 2.05 0.00 0.00 0.00 0.00 4.36 0.00 2.20 0.00 0.00 0.00 0.00 0.00 4 304501 Transcript 0 18.80 2.22 30.60 10.12 11.23 5.85 5.67 19.50 21.57 18.18 1.27 1.28 1.20 1.14 3.47 1.97 1.33 1.93 2.02 2.20 1.06 7.82 4.16 5 IG17 Intergenic 0 0.90 5.24 3.20 10.94 7.81 14.63 4.42 12.53 20.82 1.30 0.56 0.36 0.15 0.38 0.24 0.25 0.51 6.11 5.54 10.10 0.90 0.36 0.30 6 IG17_SR15 SilentIntergenicRegion 0 0.33 2.09 1.74 4.98 2.76 2.60 3.81 13.66 15.87 0.50 0.54 0.25 0.12 0.29 0.14 0.16 0.47 5.12 5.06 11.05 0.92 0.22 0.23 7 IG17_AR25 ActiveIntergenicRegion 0 0.00 3.39 1.14 15.26 7.31 3.42 1.15 9.22 14.90 1.15 0.00 0.00 0.00 1.41 0.00 0.00 0.00 3.94 16.35 4.96 0.00 0.00 0.00 8 IG17_AR24 ActiveIntergenicRegion 0 0.00 0.60 1.23 8.24 12.94 1.50 10.83 6.38 18.08 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.42 14.05 6.03 0.00 0.75 0.00 9 IG17_AR23 ActiveIntergenicRegion 0 0.14 3.18 1.07 7.13 6.27 4.42 1.69 14.54 16.09 1.95 0.00 0.00 0.00 0.53 1.67 0.00 0.00 4.56 2.31 7.52 0.00 0.80 0.00 10 IG17_AR22 ActiveIntergenicRegion 0 0.69 4.34 0.55 5.62 3.45 9.10 4.91 13.08 15.18 1.12 0.47 0.00 0.00 0.61 0.00 0.00 0.76 5.28 6.22 10.47 0.00 0.00 0.00 11 IG17_AR21 ActiveIntergenicRegion 0 0.26 3.27 0.70 7.11 3.52 9.54 4.42 6.41 13.91 1.88 1.30 0.00 0.00 0.07 0.00 0.00 1.56 4.55 3.90 17.81 0.00 0.00 0.00 12 IG17_AR20 ActiveIntergenicRegion 0 0.00 2.46 0.56 10.08 5.38 13.52 4.17 4.34 17.39 1.48 0.32 0.00 0.00 0.35 0.00 0.00 0.00 10.42 1.95 14.04 2.93 0.00 0.90 13 IG17_SR14 SilentIntergenicRegion 0 0.00 4.07 0.00 2.73 0.00 5.50 5.30 4.20 16.23 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.29 4.10 4.86 2.20 0.00 2.10 14 IG17_AR17 ActiveIntergenicRegion 0 0.00 4.07 0.00 3.07 0.00 4.13 4.96 5.19 19.14 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.09 6.37 7.18 3.86 0.00 2.94 15 IG17_SR13 SilentIntergenicRegion 0 0.58 2.65 1.54 6.80 6.18 8.02 6.19 6.52 14.34 1.73 0.79 0.49 0.00 0.18 0.28 0.00 0.90 9.64 6.33 10.34 1.90 0.00 0.70 16 IG17_SR12 SilentIntergenicRegion 0 1.84 7.24 4.87 16.64 11.09 15.19 7.21 15.97 19.41 1.78 0.84 0.13 0.23 0.16 0.19 0.81 0.62 9.96 8.68 16.53 1.13 0.19 0.44 17 IG17_AR15 ActiveIntergenicRegion 0 1.47 8.42 3.85 20.21 13.70 16.76 10.62 14.35 27.57 0.28 1.37 0.00 0.00 0.00 0.34 0.00 0.00 14.05 9.68 11.99 1.45 0.91 0.00 18 IG17_SR11 SilentIntergenicRegion 0 0.34 2.94 1.22 5.12 4.15 9.55 4.62 7.51 20.21 0.91 0.56 0.29 0.00 0.26 0.03 0.10 0.30 4.96 5.00 12.34 0.72 0.31 0.12 19 IG17_AR14 ActiveIntergenicRegion 0 1.07 4.11 4.45 18.07 4.05 18.34 9.66 6.93 25.94 2.39 1.02 1.07 0.00 0.13 0.00 0.00 0.00 10.46 10.57 11.82 0.00 1.18 0.00 20 IG17_AR13 ActiveIntergenicRegion 0 0.45 4.32 2.56 11.86 10.58 25.38 10.68 5.92 34.69 2.72 0.84 0.94 0.00 0.34 0.00 0.00 0.48 8.63 12.62 16.20 1.27 0.88 0.00 21 IG17_SR10 SilentIntergenicRegion 0 1.51 5.81 1.80 18.97 12.95 30.42 11.71 12.06 43.62 1.32 1.10 0.97 0.73 0.51 0.00 0.00 1.03 6.26 8.85 18.84 0.18 1.37 0.56 22 IG17_AR12 ActiveIntergenicRegion 0 0.91 6.84 3.93 13.04 10.79 23.63 8.62 12.87 29.46 1.55 0.59 0.20 0.00 0.20 0.10 0.00 0.45 7.83 6.78 15.43 0.24 0.64 0.30 23 IG17_SR9 SilentIntergenicRegion 0 0.69 4.45 2.92 13.43 12.39 28.02 5.53 13.11 33.98 2.09 0.64 0.00 0.00 0.31 0.04 0.16 0.57 8.75 5.86 13.55 0.42 0.47 0.15 24 IG17_AR11 ActiveIntergenicRegion 0 0.00 8.48 1.36 21.56 23.59 38.34 7.90 18.78 44.89 3.39 0.64 0.39 0.00 0.00 0.00 0.00 0.00 4.03 4.56 11.26 0.46 0.00 0.00 25 IG17_SR8 SilentIntergenicRegion 0 1.55 16.46 4.57 20.70 24.55 47.62 7.73 29.86 55.95 5.18 0.85 0.00 0.00 0.86 0.00 0.00 0.00 9.65 9.71 14.56 0.88 0.72 0.58 26 IG17_AR10 ActiveIntergenicRegion 0 0.98 14.01 7.20 25.55 24.99 59.95 9.43 34.09 69.28 4.25 0.31 1.06 0.00 0.24 0.00 0.00 0.00 18.52 8.68 18.71 3.04 0.62 0.07 27 IG17_AR9 ActiveIntergenicRegion 0 0.00 20.07 5.91 28.32 28.74 68.89 9.84 34.72 73.46 11.62 1.93 0.00 0.00 0.00 0.00 0.00 0.00 22.17 32.13 11.56 2.20 0.00 2.94 28 IG17_SR7 SilentIntergenicRegion 0 0.00 14.39 6.61 30.79 32.36 54.22 12.37 29.91 57.94 8.26 1.27 0.00 0.00 0.00 0.00 0.00 0.00 14.61 14.01 12.17 1.16 0.00 0.46 29 IG17_AR8 ActiveIntergenicRegion 0 1.99 23.47 9.81 33.96 31.21 67.56 9.80 35.57 61.52 5.82 0.99 0.31 0.24 0.45 0.29 0.17 0.85 10.52 12.56 17.08 1.19 1.13 0.17 30 IG17_AR7 ActiveIntergenicRegion 0 6.62 36.79 27.77 81.25 50.06 89.11 11.91 63.33 84.14 5.25 1.14 0.49 0.09 0.42 1.17 0.61 0.98 16.19 14.76 19.16 1.16 1.05 0.27 31 ER1a ExonRegion 1 48.57 13.37 31.97 18.45 32.80 84.25 24.69 12.66 9.91 13.21 56.50 4.80 10.09 52.67 100.50 71.46 72.52 29.62 46.20 27.57 21.70 12.53 27.74 32 E1a_E2a KnownJunction 1 44.23 9.14 50.00 23.97 7.81 34.58 11.84 20.95 6.86 11.39 66.02 31.66 0.00 31.84 70.21 23.07 78.54 6.43 24.00 36.05 23.97 23.57 22.19 33 ER2a ExonRegion 1 31.42 13.57 69.06 33.70 4.69 9.27 7.93 26.79 16.65 23.80 115.13 25.74 13.69 87.27 133.99 84.89 120.81 34.38 54.09 35.80 37.90 30.27 31.02 34 E2_Da NovelBoundary 0 2.82 3.35 0.00 0.00 4.33 0.00 11.57 2.09 0.00 0.00 0.00 0.00 0.00 2.41 4.70 8.29 4.30 4.10 25.88 0.00 0.00 0.00 0.00 35 E2a_E3a KnownJunction 0 68.31 34.34 80.57 66.92 18.59 22.94 10.47 43.46 25.09 33.90 144.40 48.47 0.00 198.66 324.25 189.95 189.25 81.37 135.06 46.85 33.67 48.25 79.90 36 ER3a ExonRegion 0 41.76 43.19 100.07 64.30 63.84 116.99 30.28 48.68 34.30 26.53 142.95 50.09 45.74 152.93 183.18 100.38 116.74 42.98 86.07 33.36 41.80 44.07 48.22 37 E3a_E4a KnownJunction 0 86.46 60.12 132.17 66.16 101.61 217.94 77.55 40.29 39.81 30.49 128.98 55.52 107.46 133.09 179.49 117.32 116.22 25.08 59.58 36.43 50.72 43.84 36.62 38 ER4a ExonRegion 0 51.71 49.78 125.70 92.28 61.58 144.71 68.08 49.25 31.27 27.03 157.10 104.18 49.69 170.04 171.39 109.10 134.54 42.50 58.51 47.32 39.83 57.49 29.85 39 E4a_E5a KnownJunction 0 120.69 67.62 133.97 97.62 36.33 75.87 57.28 46.87 33.45 27.86 171.41 135.94 72.40 225.97 192.35 107.49 181.11 73.58 59.20 77.98 55.60 75.62 40.55 40 ER5a ExonRegion 0 65.41 27.79 153.20 95.14 36.68 57.99 57.97 57.71 37.58 40.08 205.66 188.22 64.30 225.84 254.84 119.88 185.74 53.84 94.88 72.59 51.92 78.34 58.23 41 E5a_E6a KnownJunction 0 72.01 35.13 141.86 61.40 62.22 29.70 29.06 39.76 18.58 37.42 167.57 127.99 73.21 165.81 178.01 101.34 124.26 25.29 44.05 33.05 37.93 34.47 19.72 42 E5a_E7a NovelJunction 0 38.23 14.08 34.03 43.05 3.99 24.93 19.70 28.26 8.01 14.05 16.32 40.81 6.49 69.16 40.55 47.85 33.66 10.24 8.66 11.19 8.53 19.04 0.00 43 E5a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 2.05 0.00 0.00 0.00 0.00 4.36 0.00 2.20 0.00 0.00 0.00 0.00 0.00 44 E6_Aa NovelBoundary 1 3.78 0.00 1.69 5.63 0.00 24.53 10.73 2.05 1.24 1.67 2.68 12.60 6.82 2.47 6.06 0.00 35.90 0.00 0.00 3.26 0.00 0.00 4.10 45 ER6a ExonRegion 0 56.71 18.86 106.02 56.62 43.12 39.75 32.48 31.47 17.28 29.27 130.43 131.80 42.27 157.67 160.10 82.02 132.42 28.27 41.58 34.18 34.72 43.19 26.96 46 E6_Da NovelBoundary 1 0.00 0.00 0.00 1.76 0.00 4.94 4.50 2.55 1.48 1.26 2.68 7.05 0.00 2.47 4.45 0.00 23.66 0.00 0.00 9.14 0.00 0.00 0.00 47 E6a_E7a KnownJunction 1 78.16 43.94 123.35 88.27 26.99 41.85 36.57 27.40 15.86 31.94 87.86 85.83 22.24 123.37 150.44 59.04 164.38 42.74 66.45 41.42 24.40 54.68 29.11 48 I6_AR1 ActiveIntronRegion 1 0.00 2.03 0.00 0.00 0.00 1.83 2.65 1.73 1.24 0.00 6.35 5.88 0.00 1.28 1.24 0.00 13.20 0.00 0.00 5.93 2.20 0.00 0.00 49 I6_AR5 ActiveIntronRegion 0 0.36 0.00 0.09 0.34 0.90 1.73 2.83 1.22 1.06 0.29 1.72 9.52 3.62 4.53 0.51 2.78 12.83 0.58 0.56 2.45 0.93 0.70 0.50 50 ER7a ExonRegion 0 30.14 13.98 64.11 40.89 25.99 44.29 21.64 29.64 21.99 18.26 79.44 59.00 31.01 113.95 127.60 56.01 76.10 36.28 41.48 24.83 30.41 23.90 24.82 51 E7_Da NovelBoundary 0 9.33 6.71 13.81 14.18 0.00 7.78 7.68 19.02 4.54 6.10 6.58 18.76 13.64 4.77 0.00 16.58 7.67 4.35 23.91 2.68 3.15 0.00 0.00 52 I7_SR2 SilentIntronRegion 0 2.31 2.25 4.36 10.87 7.73 10.77 4.72 22.33 40.28 3.90 1.11 1.26 1.43 1.35 1.56 2.47 1.36 3.53 3.57 4.28 0.87 0.14 0.97 53 ER8a ExonRegion 0 0.34 0.00 9.23 1.84 1.37 1.48 0.86 5.40 8.36 6.91 0.00 0.00 0.00 0.22 0.33 0.48 1.06 1.40 0.00 0.68 0.71 2.16 0.38 54 E8a_E9a KnownJunction 0 0.00 0.00 18.51 5.03 3.40 0.00 0.00 15.94 15.22 20.79 0.00 0.00 0.00 0.00 4.57 0.00 0.00 1.82 0.00 0.00 0.00 5.51 3.50 55 ER9a ExonRegion 0 3.25 1.23 25.02 6.66 2.80 5.87 2.96 15.93 22.79 17.36 2.52 0.98 0.85 1.42 0.65 2.43 3.07 3.21 2.74 3.08 3.49 6.47 2.09 56 E9_Da KnownBoundary 0 10.59 2.83 44.47 9.49 3.57 5.11 4.42 33.27 35.94 30.00 5.16 0.00 0.00 9.54 4.45 4.27 0.00 6.38 12.80 3.26 5.68 11.02 4.10 57 ER9b ExonRegion 0 56.07 6.67 64.07 23.48 28.94 16.08 16.16 37.16 41.13 26.85 3.81 3.83 3.61 3.19 5.50 5.43 2.91 2.57 6.05 5.93 2.46 15.80 8.61