Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 BMP1 Gene 0 32.49 12.56 129.79 30.59 21.99 49.55 17.72 52.45 51.27 60.74 16.81 3.44 1.69 9.56 2.80 1.06 1.92 31.25 34.24 22.63 316.44 184.13 179.91 2 306385 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.08 1.26 0.08 0.60 0.03 0.26 3 397814 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 381349 Transcript 0 3.26 0.00 6.89 0.00 0.00 0.00 0.00 9.78 3.99 4.03 0.00 0.00 6.82 0.00 0.00 0.00 0.00 0.00 4.14 2.56 9.33 9.25 0.00 5 397816 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 306349 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 313857 Transcript 0 2.76 0.00 26.42 3.24 2.04 12.41 1.79 9.72 7.68 6.87 2.07 0.00 0.00 0.00 0.00 0.00 5.40 4.66 1.59 0.00 12.99 2.36 6.45 8 354870 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 483364 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 471755 Transcript 0 7.31 2.34 16.61 2.30 3.16 3.28 2.68 6.40 9.27 8.93 2.85 0.00 0.72 1.67 0.42 0.00 0.01 4.54 6.62 2.85 13.80 14.30 22.23 11 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.08 1.26 0.08 0.60 0.03 0.26 12 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 3.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.65 0.00 9.60 2.49 0.00 0.00 4.27 13 ER1b ExonRegion 0 7.73 1.00 12.73 1.81 5.73 19.60 9.40 7.56 6.87 11.91 4.07 0.76 1.66 3.13 3.25 0.00 3.72 17.71 16.78 11.55 130.51 31.68 73.71 14 E1_Ac KnownBoundary 0 0.00 2.96 17.56 1.40 0.00 18.28 8.61 2.26 6.80 12.03 5.21 5.25 0.00 2.30 0.00 0.00 4.68 11.32 14.40 8.18 87.54 25.23 73.07 15 ER1c ExonRegion 0 9.46 2.07 40.79 7.04 4.60 29.88 12.09 10.05 19.61 26.33 7.49 0.00 0.28 8.55 3.41 0.00 5.18 31.29 28.90 20.94 213.43 79.76 145.01 16 E1a_E2a KnownJunction 0 7.04 11.45 58.01 15.78 3.31 55.48 20.98 20.87 24.83 39.81 9.90 0.00 6.49 17.19 0.00 0.00 0.00 38.84 12.71 30.74 309.32 140.65 133.42 17 ER2a ExonRegion 0 13.33 5.33 85.80 16.10 10.37 34.81 17.08 39.38 41.42 51.01 17.45 4.25 1.36 16.31 3.72 0.63 7.18 40.18 21.93 40.67 314.14 147.49 175.25 18 E2a_E3a KnownJunction 0 27.34 2.70 127.14 14.05 13.84 51.22 32.55 32.45 55.29 64.36 31.27 6.30 0.00 18.89 4.70 4.36 0.00 38.76 40.38 32.53 387.16 166.92 159.89 19 ER3a ExonRegion 0 12.74 6.55 93.78 20.32 7.51 24.69 16.93 43.53 39.77 59.81 26.96 4.33 0.00 18.52 7.06 0.47 1.97 37.97 28.39 36.77 453.06 202.30 171.56 20 E3a_E4a KnownJunction 0 23.71 9.14 126.78 19.18 27.59 51.05 28.40 44.81 41.81 60.39 32.48 18.61 0.00 26.66 4.70 0.00 4.58 46.05 42.26 20.52 546.61 190.50 195.65 21 ER4a ExonRegion 0 24.48 7.12 103.42 16.45 19.50 45.11 16.70 50.36 45.48 69.47 29.98 14.53 3.42 18.26 2.88 1.28 0.00 40.02 34.20 29.44 495.50 242.92 216.69 22 E4a_E5a KnownJunction 0 24.52 9.60 75.40 6.76 11.80 49.40 17.22 41.48 22.57 43.65 20.90 12.60 0.00 14.36 0.00 0.00 0.00 10.36 16.57 27.48 416.81 190.13 135.39 23 E5_Aa NovelBoundary 0 6.89 2.43 30.10 13.95 4.33 36.23 8.04 9.78 18.17 29.01 12.21 0.00 6.33 2.12 0.00 4.36 0.00 17.45 12.14 25.82 57.45 35.33 73.84 24 ER5a ExonRegion 0 22.25 11.49 122.45 22.37 19.75 53.21 18.83 49.89 55.89 70.44 21.56 6.39 4.30 16.86 4.99 0.00 1.88 35.84 47.64 26.61 420.27 233.78 210.52 25 E5a_E6a KnownJunction 0 0.00 3.16 8.01 2.06 0.00 11.87 0.00 4.60 5.84 11.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 8.75 3.26 3.09 6.25 11.18 26 E5a_E7a KnownJunction 0 28.23 18.75 124.63 30.10 70.20 70.58 35.95 103.30 47.95 91.36 16.27 13.20 6.82 18.84 0.00 0.00 0.00 41.08 84.14 15.21 444.92 335.31 292.62 27 ER6a ExonRegion 0 3.25 2.71 15.94 4.35 0.85 12.13 1.32 2.98 9.26 11.40 0.71 0.00 0.00 0.41 0.00 0.00 0.00 13.41 6.54 7.55 5.96 5.11 12.63 28 E6a_E7a KnownJunction 0 0.00 0.00 9.88 4.99 0.00 2.90 1.94 0.00 6.94 6.42 2.16 0.00 0.00 0.00 0.00 0.00 0.00 3.44 0.00 0.00 2.47 5.88 3.84 29 ER7a ExonRegion 0 33.17 13.79 191.62 59.31 47.25 63.09 29.91 106.40 92.74 102.13 36.94 5.72 2.35 20.67 6.10 1.93 6.57 69.46 102.86 29.45 635.73 459.53 411.10 30 E7a_E8a KnownJunction 0 47.86 12.17 248.69 67.86 75.55 67.52 22.52 127.04 99.85 137.83 54.54 6.30 0.00 18.72 13.35 4.19 9.35 64.38 116.05 54.20 725.70 540.57 406.67 31 E8_Aa NovelBoundary 0 20.23 2.57 1.83 0.00 19.86 20.61 5.17 0.00 2.63 2.79 8.21 0.00 0.00 0.00 0.00 0.00 0.00 1.62 11.77 15.34 224.07 105.08 79.90 32 ER8a ExonRegion 0 46.55 18.86 203.87 53.10 30.10 86.80 21.64 128.06 100.35 126.41 45.49 8.83 1.91 15.88 6.13 4.26 5.65 67.45 90.23 46.91 739.48 384.75 383.95 33 E8a_E9a KnownJunction 0 52.75 29.34 259.51 80.24 56.88 142.82 23.45 128.77 114.44 145.97 44.85 0.00 0.00 17.66 14.22 8.29 8.60 101.39 93.37 39.63 741.88 422.82 368.00 34 ER9a ExonRegion 0 40.91 28.86 186.80 47.52 50.47 115.10 40.52 86.57 104.16 111.33 43.16 5.82 3.68 21.30 4.63 2.28 4.55 70.18 85.10 45.67 715.75 441.51 374.35 35 E9a_E10a KnownJunction 0 53.27 33.88 167.20 35.66 57.39 93.18 46.94 52.16 85.91 100.52 35.22 6.00 6.33 16.36 0.00 4.36 8.60 51.82 43.95 44.10 639.09 324.54 330.87 36 ER10a ExonRegion 0 23.77 14.63 144.15 35.08 50.35 62.33 31.74 75.15 75.29 82.74 21.39 14.33 3.46 22.91 4.45 4.24 7.18 38.00 45.12 30.74 574.08 321.00 274.73 37 E10a_E11a KnownJunction 0 16.23 11.18 175.36 46.05 41.85 75.81 25.04 89.95 89.76 110.72 29.38 11.55 0.00 19.07 0.00 4.36 3.74 32.50 52.90 22.63 538.82 331.40 336.33 38 ER11a ExonRegion 0 31.39 12.60 191.35 37.80 32.25 90.06 24.00 68.98 91.76 98.45 28.48 8.58 3.05 17.77 1.29 1.96 6.21 37.52 56.08 31.70 578.52 300.83 269.84 39 E11a_E12a KnownJunction 0 87.87 12.89 299.22 58.80 54.92 179.33 44.16 114.14 110.01 135.79 36.90 28.81 5.84 23.66 0.00 0.00 13.46 81.87 84.43 38.29 637.54 286.27 295.10 40 ER12a ExonRegion 0 71.76 17.24 241.26 58.45 45.36 109.15 31.27 97.29 105.10 110.29 27.10 13.82 2.67 19.63 7.03 0.00 3.26 64.10 64.58 40.89 705.19 365.71 360.85 41 E12a_E13a KnownJunction 0 67.35 18.42 249.10 49.11 53.14 161.38 21.42 87.86 101.10 115.64 28.38 17.56 6.17 11.83 0.00 0.00 0.00 52.85 133.75 50.75 701.23 320.01 334.20 42 ER13a ExonRegion 0 38.60 10.13 178.62 36.71 30.20 86.80 27.64 86.45 86.47 89.71 32.39 3.71 2.97 11.68 3.00 1.79 0.08 48.53 59.53 35.58 529.62 312.40 315.90 43 E13a_E14a KnownJunction 0 82.24 12.83 243.16 58.67 36.33 82.57 38.91 123.76 94.70 125.88 63.12 12.15 6.49 22.25 4.45 4.36 0.00 62.93 103.63 40.91 560.81 528.38 453.45 44 ER14a ExonRegion 0 51.23 12.49 203.07 34.09 24.70 72.94 26.27 86.27 75.20 108.32 35.41 2.23 1.90 18.24 3.75 2.03 1.89 42.13 54.96 34.95 522.93 260.64 277.16 45 E14a_E15a KnownJunction 0 0.00 0.00 26.76 1.90 0.00 2.90 0.00 6.98 5.38 13.67 0.00 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 10.50 18.98 12.72 46 E14a_E15b KnownJunction 0 54.60 3.03 179.71 39.22 33.79 72.86 18.55 64.08 75.11 72.45 24.11 0.00 0.00 11.65 0.00 0.00 4.77 34.57 41.13 40.08 438.87 190.44 214.60 47 ER15a ExonRegion 0 1.42 4.09 26.80 1.42 5.07 1.27 2.62 3.87 10.42 12.14 4.65 0.00 4.83 2.59 0.81 0.00 0.00 4.58 3.46 1.06 18.41 32.47 31.15 48 E15_Da KnownBoundary 0 3.41 0.00 26.49 3.66 0.00 0.00 8.17 0.00 7.90 17.65 6.74 0.00 6.66 0.00 4.45 0.00 0.00 11.03 9.60 8.56 11.74 54.44 44.13 49 ER15b ExonRegion 0 7.31 2.34 16.61 2.30 3.16 3.28 2.68 6.40 9.27 8.93 2.85 0.00 0.72 1.67 0.42 0.00 0.01 4.54 6.62 2.85 13.80 14.30 22.23 50 E15_Ab KnownBoundary 0 3.19 0.00 16.85 4.46 0.00 5.79 2.25 6.98 3.01 4.51 7.42 0.00 0.00 2.30 0.00 0.00 0.00 6.80 9.60 0.00 12.29 3.12 15.71 51 ER15c ExonRegion 0 65.80 14.69 215.24 40.97 37.88 110.10 32.22 81.17 79.17 93.08 27.82 5.03 3.69 20.19 4.81 3.46 1.55 51.93 55.92 36.37 551.57 329.24 341.81 52 E15b_E16a KnownJunction 0 121.50 36.51 305.73 52.07 45.42 159.11 39.00 88.80 87.15 101.08 23.85 6.30 0.00 24.72 8.90 4.19 0.00 55.09 75.86 41.67 557.60 340.46 390.37 53 ER16a ExonRegion 0 69.79 27.40 330.68 64.23 48.10 94.34 38.30 116.44 93.94 134.52 41.99 11.84 6.45 18.23 7.63 1.97 4.52 70.88 65.61 41.61 612.34 400.58 391.71 54 E16_Da NovelBoundary 0 35.64 0.00 23.51 3.26 4.33 4.77 19.65 9.98 9.90 22.78 7.95 0.00 0.00 0.00 4.45 0.00 0.00 15.79 21.74 14.64 54.24 24.49 86.64 55 E16a_E17a KnownJunction 0 3.11 0.00 17.80 0.00 0.00 0.00 0.00 7.15 8.97 1.21 2.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.42 2.75 0.00 0.00 0.00 56 E16a_E17b KnownJunction 0 3.26 0.00 6.89 0.00 0.00 0.00 0.00 9.78 3.99 4.03 0.00 0.00 6.82 0.00 0.00 0.00 0.00 0.00 4.14 2.56 9.33 9.25 0.00 57 E16a_E18a KnownJunction 0 85.79 19.08 243.60 45.35 47.79 152.24 35.60 74.80 24.31 87.57 21.11 0.00 0.00 0.00 10.75 0.00 8.88 52.07 47.62 18.09 389.57 348.17 314.05 58 E16a_E19a KnownJunction 0 17.71 16.31 124.69 24.31 10.70 12.32 10.47 28.59 26.42 35.32 15.11 0.00 6.82 4.83 4.45 0.00 0.00 8.71 25.98 15.53 299.00 104.04 127.62 59 I16 Intron 0 9.85 3.00 21.21 7.99 6.48 7.35 6.36 20.37 13.30 15.00 6.00 2.74 1.15 3.63 1.05 0.45 0.75 8.13 9.40 6.04 62.44 37.28 58.11 60 I16_SR1 SilentIntronRegion 0 10.66 3.08 21.83 7.42 7.30 7.89 8.07 17.29 13.37 14.25 6.35 3.07 0.49 3.13 1.21 0.20 1.14 5.83 9.57 4.59 60.16 38.41 59.55 61 I16_AR1 ActiveIntronRegion 0 8.89 2.91 20.52 8.72 5.49 6.72 4.29 24.20 13.26 15.97 5.58 2.34 1.95 4.25 0.86 0.75 0.28 10.98 9.22 7.83 65.44 36.02 56.53 62 E17_Aa NovelBoundary 0 0.00 0.00 21.58 14.88 0.00 2.73 0.00 18.77 15.60 23.48 0.00 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 6.26 47.45 26.02 10.33 63 ER17a ExonRegion 0 5.71 2.99 20.28 5.24 4.14 7.24 4.17 16.94 13.80 13.58 8.21 1.48 1.64 5.85 1.79 0.62 1.74 7.69 12.53 5.33 49.12 31.95 41.35 64 E17_Ab KnownBoundary 0 3.78 0.00 18.42 1.70 4.07 2.33 0.00 30.93 20.17 12.09 4.26 0.00 0.00 0.00 0.00 0.00 4.77 5.60 9.22 6.07 80.43 26.45 47.63 65 ER17b ExonRegion 0 6.53 1.81 18.81 2.49 2.09 0.36 3.22 22.66 20.08 20.15 6.68 0.09 2.24 3.28 1.26 0.00 1.79 7.43 7.62 4.58 72.29 35.96 37.28 66 E17_Da KnownBoundary 0 3.19 8.29 24.45 1.96 0.00 0.00 7.02 13.43 19.21 22.05 4.74 0.00 0.00 9.30 4.45 0.00 4.11 14.51 15.06 3.26 41.39 49.35 30.13 67 ER17c ExonRegion 0 3.59 5.73 23.09 1.90 5.25 1.45 2.87 13.74 12.58 15.36 3.97 0.00 0.00 6.95 4.73 0.00 3.74 6.73 14.59 5.10 40.74 25.39 31.96 68 E17_Dc NovelBoundary 0 3.19 0.00 1.69 0.00 0.00 7.61 1.90 22.47 6.34 20.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 0.00 0.00 11.49 12.80 23.73 69 E17c_E18a KnownJunction 0 3.41 0.00 28.33 3.76 4.07 11.98 2.25 9.08 7.96 5.72 2.21 0.00 0.00 0.00 0.00 0.00 4.21 3.77 0.00 0.00 10.56 2.63 4.10 70 ER17d ExonRegion 0 2.12 0.00 24.51 2.73 0.00 12.84 1.32 10.37 7.41 8.03 1.93 0.00 0.00 0.00 0.00 0.00 6.60 5.54 3.19 0.00 15.43 2.08 8.81 71 I17 Intron 0 10.84 3.88 34.98 8.98 7.88 8.90 7.49 23.29 15.41 20.89 5.63 2.81 2.15 3.74 2.47 0.10 1.11 7.97 11.84 9.97 72.45 50.65 67.36 72 I17_AR1 ActiveIntronRegion 0 10.86 3.89 35.02 8.99 7.90 8.92 7.50 23.32 15.43 20.92 5.64 2.81 2.16 3.75 2.48 0.10 1.11 7.98 11.86 9.99 72.54 50.72 67.45 73 E18_Aa NovelBoundary 0 3.41 0.00 13.54 2.06 3.31 10.22 16.12 11.71 5.76 10.99 0.00 0.00 0.00 0.00 0.00 0.00 3.83 2.28 0.00 8.12 40.16 13.53 22.37 74 ER18a ExonRegion 0 59.95 18.38 208.87 57.13 36.30 108.42 22.43 76.05 61.92 76.72 20.61 2.19 0.00 6.28 9.37 4.48 9.07 45.26 41.41 24.28 317.79 364.79 318.08 75 E18_Da KnownBoundary 0 37.27 5.33 147.45 56.64 25.13 64.85 11.92 68.72 56.86 61.06 21.64 0.00 0.00 17.72 0.00 4.27 7.76 20.27 47.25 37.01 214.49 314.99 232.02 76 ER18b ExonRegion 0 33.76 14.83 103.78 34.03 19.11 48.25 17.91 39.98 48.05 43.01 11.36 0.00 2.10 6.46 3.00 2.45 1.16 20.04 19.32 19.01 203.93 147.58 141.88 77 E18_Db NovelBoundary 0 40.16 2.70 133.23 63.96 22.84 67.52 14.13 43.42 31.94 50.63 4.79 0.00 0.00 9.18 0.00 0.00 0.00 21.56 20.42 13.29 173.22 92.34 125.40 78 I18 Intron 0 24.55 6.46 65.28 22.26 12.75 33.21 11.99 22.92 26.90 31.50 7.37 1.70 1.36 2.73 0.00 0.94 0.00 19.99 11.13 12.17 90.64 73.16 87.25 79 I18_AR1 ActiveIntronRegion 0 24.69 6.50 65.68 22.40 12.83 33.42 12.07 23.06 27.07 31.69 7.42 1.71 1.37 2.75 0.00 0.95 0.00 20.12 11.20 12.25 91.21 73.60 87.80 80 E19_Aa NovelBoundary 0 3.56 11.91 86.78 34.99 24.96 54.00 14.40 41.61 34.09 35.70 5.37 0.00 0.00 7.36 0.00 0.00 0.00 21.10 28.14 14.76 110.71 76.79 107.98 81 ER19a ExonRegion 0 18.86 10.18 142.82 30.06 10.30 43.72 14.30 40.40 46.21 59.48 12.67 2.78 4.06 7.04 0.60 1.20 1.34 17.58 26.06 23.07 339.83 157.22 116.95 82 E19a_E20a KnownJunction 0 35.93 13.88 173.80 55.34 15.11 33.45 9.76 71.26 71.32 66.94 11.63 0.00 0.00 6.47 0.00 0.00 0.00 33.16 12.14 14.76 285.10 187.07 99.28 83 E19a_E21a NovelJunction 0 6.59 0.00 28.33 3.20 4.07 12.04 1.90 1.56 3.41 7.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 19.27 5.94 8.71 84 ER20a ExonRegion 0 47.85 16.32 174.02 43.41 40.91 57.45 22.71 75.80 67.85 73.69 20.64 3.55 1.54 4.05 0.00 0.00 0.00 33.00 34.52 31.90 392.67 152.49 187.14 85 E20a_E21a KnownJunction 0 51.34 14.87 128.06 35.46 51.02 55.76 15.19 63.99 66.03 65.76 14.48 6.30 0.00 0.00 0.00 0.00 0.00 31.71 23.72 24.03 299.25 110.40 113.19 86 ER21a ExonRegion 0 45.69 17.10 161.07 37.36 25.76 55.00 23.32 52.22 52.40 58.15 11.85 2.18 0.00 6.53 1.95 1.42 0.00 25.10 25.38 21.37 302.52 145.61 162.09 87 E21a_E22a KnownJunction 0 82.24 27.36 207.95 53.54 63.41 81.94 39.00 67.65 69.50 76.56 6.79 0.00 0.00 7.42 0.00 0.00 0.00 32.83 21.08 21.92 316.18 148.74 159.63 88 ER22a ExonRegion 0 52.81 18.05 205.85 49.97 27.78 59.58 19.77 64.67 72.53 78.64 14.82 2.05 0.00 8.75 0.83 0.00 0.00 33.62 34.06 24.71 345.88 178.34 189.77 89 E22a_E23a KnownJunction 0 50.60 17.63 230.24 49.64 34.72 49.69 20.80 86.79 88.77 80.83 17.00 5.70 0.00 12.30 0.00 0.00 0.00 51.32 25.41 13.93 280.84 180.33 223.05 90 ER23a ExonRegion 0 59.44 26.38 204.36 56.64 33.40 61.43 21.32 77.36 66.68 83.23 11.84 1.74 0.33 5.80 1.14 0.83 0.00 33.32 36.10 22.73 292.98 222.65 192.49