Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC068020.2 Gene 0 1.28 0.72 5.84 5.06 1.43 7.83 3.81 3.39 2.62 1.40 22.14 1.80 11.95 6.26 4.93 6.87 3.52 5.65 4.76 3.93 23.75 3.63 10.03 2 427893 Transcript 0 0.36 0.58 4.64 4.43 0.52 5.65 2.06 1.20 2.50 0.72 11.96 1.05 8.73 2.71 2.10 3.53 2.35 5.15 3.09 2.51 12.57 1.20 4.66 3 338711 Transcript 0 0.00 0.00 10.26 5.76 0.00 0.00 0.00 4.85 6.68 3.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.15 0.00 0.00 0.00 0.00 0.00 4 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.44 0.00 0.00 0.00 0.00 2.21 0.41 0.00 0.00 0.57 5 E1_Ab KnownBoundary 0 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.36 0.00 0.00 0.00 0.00 4.80 0.00 2.41 0.00 0.00 6 ER1b ExonRegion 0 2.27 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.92 1.04 0.00 2.07 2.74 0.00 0.00 0.00 2.96 4.29 3.38 1.18 2.32 4.51 7 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 ER2a ExonRegion 0 0.00 0.00 0.29 1.56 4.37 0.06 1.07 0.27 0.82 0.00 1.38 2.89 4.09 4.80 0.00 0.00 2.67 2.96 2.58 4.86 7.49 3.41 4.57 9 E2_Da NovelBoundary 0 0.00 10.06 3.28 2.06 0.00 0.00 1.99 2.14 0.00 0.00 7.84 0.00 0.00 0.00 0.00 0.00 0.00 3.90 0.00 3.26 5.13 0.00 4.35 10 E2a_E3a KnownJunction 0 0.00 0.00 0.00 4.06 8.06 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.63 0.00 0.00 5.25 6.25 8.71 11 I2 Intron 0 1.22 0.80 5.05 4.23 1.44 3.16 2.14 2.96 2.38 1.72 3.26 0.44 1.83 1.26 2.12 1.28 0.59 3.92 3.66 5.19 9.88 2.62 4.22 12 I2_SR1 SilentIntronRegion 0 1.22 0.80 5.05 4.23 1.44 3.17 2.14 2.96 2.38 1.72 3.27 0.44 1.83 1.26 2.12 1.28 0.59 3.93 3.66 5.20 9.90 2.62 4.22 13 E3_Aa NovelBoundary 0 0.00 5.46 5.50 0.00 0.00 0.00 0.00 3.86 1.79 2.77 4.53 0.00 15.10 0.00 0.00 0.00 0.00 8.42 4.42 5.62 6.24 0.00 0.00 14 ER3a ExonRegion 0 0.00 0.00 1.89 2.68 1.65 7.38 0.72 3.07 1.37 0.88 4.68 2.24 7.18 3.35 1.04 7.08 0.00 2.90 1.18 0.11 24.62 3.52 7.47 15 E3_Da NovelBoundary 0 3.33 0.00 7.51 3.26 0.00 5.56 6.18 6.49 5.41 1.56 0.00 0.00 0.00 0.00 0.00 0.00 4.68 18.53 0.00 0.00 2.72 3.06 4.27 16 E3a_E4a KnownJunction 0 0.00 0.00 2.42 1.83 0.00 9.82 0.00 0.00 0.00 0.00 2.63 0.00 7.63 2.35 0.00 0.00 0.00 0.00 0.00 0.00 11.49 10.35 0.00 17 E4_Aa NovelBoundary 0 3.63 6.51 10.53 7.42 0.00 0.00 5.65 0.00 0.00 1.67 12.58 0.00 8.28 0.00 0.00 0.00 0.00 11.52 0.00 0.00 0.00 2.82 3.24 18 ER4a ExonRegion 0 1.06 1.73 4.31 6.40 1.00 11.67 5.08 5.08 1.57 0.16 26.61 0.00 16.92 10.38 7.62 7.55 4.66 3.48 8.31 2.13 26.49 7.13 16.58 19 E4_Da NovelBoundary 0 14.60 2.96 16.20 16.15 0.00 0.00 4.33 2.22 0.00 0.00 35.80 6.30 7.30 7.65 4.45 7.78 0.00 9.12 14.40 10.99 2.66 0.00 4.35 20 E4a_E5a KnownJunction 0 0.00 3.03 1.83 2.86 3.74 34.41 2.08 14.21 2.63 0.00 11.79 0.00 12.82 13.13 10.26 14.61 3.74 6.05 8.85 0.00 31.01 7.65 40.21 21 E5_Aa NovelBoundary 0 3.41 2.70 7.92 4.73 0.00 0.00 0.00 2.34 0.00 0.00 33.69 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 2.56 0.00 2.82 0.00 22 ER5a ExonRegion 0 4.53 0.23 12.21 9.85 3.00 14.96 6.45 12.22 3.42 2.92 67.23 2.46 34.55 18.93 8.70 19.50 3.99 11.45 7.30 6.53 51.21 11.60 18.45 23 E5_Da NovelBoundary 0 3.63 0.00 24.69 4.59 4.16 14.48 13.65 4.93 1.42 6.53 57.80 0.00 14.77 4.59 0.00 0.00 4.77 10.03 7.91 0.00 0.00 0.00 0.00 24 E5a_E6a KnownJunction 0 3.70 0.00 0.00 1.30 7.81 14.25 0.00 12.40 2.52 3.73 7.53 5.85 13.47 9.48 0.00 15.81 0.00 8.79 9.32 5.82 44.67 10.84 19.63 25 E5a_E7a NovelJunction 0 0.00 0.00 3.67 8.16 0.00 2.73 0.00 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.53 0.00 0.00 13.90 0.00 8.45 26 I5 Intron 0 0.00 0.00 2.27 0.00 0.00 1.14 0.00 0.00 0.00 0.00 21.64 0.00 2.40 0.83 0.00 9.24 2.05 0.00 0.00 0.00 1.37 2.59 0.00 27 I5_AR1 ActiveIntronRegion 0 0.00 0.00 2.33 0.00 0.00 1.17 0.00 0.00 0.00 0.00 22.16 0.00 2.46 0.85 0.00 9.47 2.10 0.00 0.00 0.00 1.40 2.66 0.00 28 E6_Aa NovelBoundary 0 0.00 0.00 10.76 6.79 0.00 4.54 15.63 2.01 1.79 1.42 47.22 0.00 19.64 0.00 5.19 11.45 0.00 4.44 7.53 0.00 3.15 0.00 4.01 29 ER6a ExonRegion 0 3.39 2.67 19.50 8.76 3.37 17.75 11.60 7.56 5.78 5.51 64.13 2.13 24.98 12.33 11.65 15.83 6.10 10.88 8.47 8.77 47.47 5.09 20.56 30 E6_Da KnownBoundary 0 2.74 0.00 15.40 11.05 4.33 8.29 7.46 4.19 6.28 1.67 9.00 0.00 21.10 7.30 0.00 15.12 0.00 11.36 4.71 2.62 9.33 4.65 7.34 31 E6a_E6b KnownJunction 0 0.00 0.00 10.26 5.76 0.00 0.00 0.00 4.85 6.68 3.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.15 0.00 0.00 0.00 0.00 0.00 32 E6_Ab KnownBoundary 0 0.00 2.76 12.83 2.60 0.00 2.56 3.97 0.00 6.25 5.96 58.75 6.30 0.00 2.41 4.45 16.24 4.39 12.10 9.51 3.26 7.60 2.39 7.60 33 ER6b ExonRegion 0 2.12 2.03 24.10 12.27 2.68 18.64 9.49 5.19 11.12 4.59 71.84 7.22 28.14 11.10 7.74 23.78 3.30 22.17 13.27 5.67 25.71 6.60 16.15 34 ER6c ExonRegion 0 0.47 1.26 10.89 8.72 0.59 12.46 8.83 4.17 10.08 3.62 52.00 10.72 23.67 11.83 11.37 16.56 6.76 14.02 9.40 11.96 46.63 3.14 19.25 35 E6_Db NovelBoundary 0 0.00 0.00 19.48 11.95 0.00 5.05 4.50 6.04 1.10 8.14 114.24 0.00 0.00 7.24 6.30 11.62 0.00 12.73 8.47 23.52 5.81 0.00 8.71 36 E6b_E7a KnownJunction 0 3.33 0.00 4.29 3.63 0.00 8.01 3.71 6.65 5.90 0.00 4.53 0.00 14.28 7.42 9.64 15.89 12.53 2.57 13.93 5.69 59.49 0.00 21.60 37 I6 Intron 0 2.22 1.13 10.26 8.27 2.64 3.06 8.26 4.93 1.93 1.79 49.41 1.76 6.13 3.98 2.25 7.16 2.24 7.37 3.34 5.25 8.84 1.80 5.80 38 I6_AR1 ActiveIntronRegion 0 2.42 1.36 11.77 7.91 3.06 3.55 9.11 5.85 2.51 1.91 64.71 1.75 7.84 5.19 2.90 9.21 1.99 8.71 3.92 5.85 9.19 1.37 5.67 39 I6_SR1 SilentIntronRegion 0 1.87 0.72 7.54 9.01 1.89 2.16 6.74 3.26 0.88 1.58 21.41 1.78 3.02 1.76 1.08 3.41 2.72 4.96 2.29 4.20 8.25 2.61 6.09 40 E7_Aa NovelBoundary 0 3.33 0.00 8.19 10.32 4.16 7.95 8.61 2.38 4.80 0.00 23.53 5.70 0.00 2.18 0.00 0.00 4.39 3.86 0.00 0.00 8.40 2.94 3.76 41 ER7a ExonRegion 0 0.66 0.46 8.64 12.28 3.19 18.29 6.82 4.49 6.97 0.62 18.11 6.26 14.31 8.00 13.12 11.76 14.34 13.57 14.32 8.42 53.37 7.55 21.82 42 E7_Da NovelBoundary 0 0.00 3.35 33.00 32.23 3.31 29.53 10.25 33.35 25.03 26.75 12.16 0.00 12.50 12.07 11.74 0.00 0.00 53.35 21.27 15.79 72.03 10.72 35.25 43 E7_Db NovelBoundary 0 3.70 0.00 4.58 0.00 0.00 10.33 7.60 1.73 1.27 0.00 10.32 0.00 0.00 4.47 14.46 8.03 0.00 2.07 0.00 0.00 7.66 3.00 6.91 44 E7b_E8a KnownJunction 0 0.00 0.00 0.00 3.20 0.00 5.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 1.82 0.00 0.00 8.77 0.00 0.00 45 ER7b ExonRegion 0 0.00 1.57 3.72 8.40 0.95 14.20 4.91 3.18 5.90 0.44 4.55 0.14 6.05 6.08 6.08 0.29 2.24 10.31 6.17 8.24 31.85 1.81 8.90 46 I7 Intron 0 1.31 2.46 7.18 8.08 3.43 8.05 3.60 6.24 5.05 4.61 8.80 3.80 7.70 8.03 6.38 8.77 4.53 10.04 11.15 9.93 34.12 7.62 15.85 47 I7_SR1 SilentIntronRegion 0 1.03 2.39 3.73 3.42 1.82 4.86 3.04 1.44 1.16 1.44 7.42 2.42 6.54 6.74 5.83 8.10 3.45 7.58 6.25 6.54 27.52 3.34 11.24 48 I7_AR1 ActiveIntronRegion 0 2.66 4.59 12.68 15.65 4.96 7.01 3.91 14.82 13.98 11.68 12.13 2.97 6.24 10.65 9.21 12.85 6.46 21.62 13.66 19.30 44.26 10.66 23.92 49 I7_SR2 SilentIntronRegion 0 0.00 0.00 3.79 5.33 0.00 7.00 2.25 1.73 1.24 2.54 2.52 2.62 4.69 5.36 2.37 9.55 0.00 15.12 8.49 5.35 17.96 4.67 8.10 50 I7_AR2 ActiveIntronRegion 0 0.00 0.00 2.51 5.29 1.75 5.34 2.12 0.63 3.10 1.99 8.54 0.00 3.76 8.28 5.84 5.75 3.28 8.98 2.57 7.56 23.51 3.09 7.53 51 I7_AR3 ActiveIntronRegion 0 0.60 1.15 2.79 6.30 3.02 5.27 1.10 4.09 1.58 2.14 6.31 1.00 8.08 7.33 1.76 6.65 3.67 6.34 6.18 3.88 23.67 2.57 6.68 52 I7_SR3 SilentIntronRegion 0 1.20 2.82 6.58 7.32 11.12 7.65 6.89 5.71 3.67 1.94 5.46 12.92 19.60 7.89 5.11 4.17 1.83 3.82 8.92 3.69 11.16 5.20 13.77 53 I7_AR4 ActiveIntronRegion 0 1.73 0.00 0.00 0.00 3.84 0.09 2.69 0.00 2.47 1.15 19.68 9.45 6.41 6.69 1.79 9.11 3.08 3.36 2.71 4.57 5.36 0.00 2.94 54 I7_AR5 ActiveIntronRegion 0 1.60 2.86 13.61 13.39 2.89 17.64 4.86 11.69 7.76 7.94 10.02 4.71 8.20 9.13 8.94 10.93 7.13 10.52 24.78 15.41 60.94 18.24 27.29 55 Ix Intron 1 4.50 0.00 0.00 0.00 0.00 1.30 0.94 0.00 0.00 0.00 28.75 0.00 8.21 6.50 2.06 10.53 4.68 0.00 0.00 1.51 4.68 1.48 0.00 56 Ix_AR1 ActiveIntronRegion 0 4.56 0.00 0.00 0.00 0.00 1.32 0.95 0.00 0.00 0.00 29.10 0.00 8.32 6.54 2.00 10.67 4.74 0.00 0.00 1.53 4.75 1.47 0.00 57 ER8a ExonRegion 0 0.00 0.46 0.93 2.80 0.00 0.87 0.04 0.02 0.46 0.00 1.57 0.00 3.08 0.37 0.83 0.68 1.41 1.77 0.00 0.38 6.24 0.00 2.50 58 E8_Da NovelBoundary 0 46.97 3.22 22.35 16.91 41.26 60.19 6.09 24.23 9.11 4.59 26.69 12.30 40.26 12.01 9.27 22.73 18.70 16.91 13.18 6.20 20.70 13.17 31.24 59 E8a_E9a KnownJunction 0 0.00 0.00 3.49 3.46 0.00 0.00 0.00 0.00 0.00 0.00 4.58 0.00 21.91 0.00 0.00 0.00 4.30 0.00 0.00 2.75 13.16 0.00 4.35 60 E9_Aa NovelBoundary 0 3.11 0.00 25.72 19.64 8.06 24.42 9.45 23.33 6.42 1.10 7.00 18.91 0.00 0.00 5.69 7.95 8.51 15.71 16.94 2.43 16.80 4.96 11.61 61 ER9a ExonRegion 0 0.38 0.00 0.25 0.88 0.00 0.67 0.00 0.00 0.02 0.00 1.20 0.00 1.90 0.00 0.08 0.00 0.42 0.00 0.00 0.09 2.26 0.00 0.14