Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CTSB Gene 0 983.74 134.65 509.44 368.86 419.17 863.48 300.35 514.08 533.61 319.80 70.79 91.57 61.17 114.58 126.84 116.48 87.11 395.20 199.13 219.36 3109.90 3686.80 2383.61 2 353047 Transcript 0 0.00 0.00 1.00 0.40 0.00 5.48 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 2.50 1.06 0.00 4.48 0.38 0.22 3 345125 Transcript 0 4.92 1.31 4.94 2.77 2.26 5.22 5.84 3.13 5.06 1.69 0.00 2.02 2.14 0.00 3.19 0.00 0.48 6.61 2.65 8.06 9.86 5.72 15.58 4 434271 Transcript 0 2.45 0.02 1.25 0.13 0.82 2.97 0.98 2.28 1.04 0.97 0.04 0.04 0.04 0.09 2.31 0.08 1.16 2.02 0.74 1.34 8.13 2.64 6.38 5 453527 Transcript 0 0.00 0.00 0.00 1.93 0.00 2.50 0.00 6.61 1.33 1.67 2.68 0.00 0.00 0.00 0.00 0.00 0.00 5.10 0.00 0.00 16.99 11.14 16.48 6 415599 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 420692 Transcript 0 22.21 4.01 15.47 10.37 8.92 14.51 13.64 24.33 15.74 18.97 2.15 2.84 5.87 2.97 10.93 9.35 8.69 31.63 14.15 25.85 44.73 46.88 38.21 8 ER1a ExonRegion 0 0.00 0.00 1.00 0.40 0.00 5.48 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 2.50 1.06 0.00 4.48 0.38 0.22 9 E1_Ab KnownBoundary 0 0.00 0.00 0.00 1.90 0.00 5.79 0.00 1.89 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.43 4.80 0.00 2.84 2.82 3.84 10 ER1b ExonRegion 0 7.58 6.34 4.12 5.53 12.79 85.53 21.21 5.77 5.78 6.19 9.24 0.35 0.00 4.39 13.17 20.80 20.93 22.03 17.77 7.91 73.38 98.84 90.57 11 E1_Ac KnownBoundary 0 56.23 30.26 38.29 33.40 40.07 371.77 98.17 27.68 45.05 27.86 25.69 0.00 0.00 9.12 45.99 72.37 71.81 166.81 75.48 17.13 299.31 446.88 416.74 12 ER1c ExonRegion 0 322.52 40.18 39.91 18.97 120.94 936.69 222.24 18.53 32.67 49.84 33.60 7.40 6.82 84.13 68.65 107.83 62.68 58.61 140.64 83.97 2459.16 2847.61 3879.48 13 E1_Da KnownBoundary 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.67 14 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 15 E1a_E3b KnownJunction 0 38.15 3.29 42.31 13.38 34.04 185.29 30.38 16.76 20.78 16.79 2.37 13.80 6.66 9.36 4.82 8.72 7.39 43.73 4.80 24.48 347.25 127.24 152.03 16 ER1d ExonRegion 0 0.00 0.00 1.29 0.00 0.00 0.00 0.00 0.08 0.00 0.14 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.14 17 E1b_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER2a ExonRegion 0 15.27 5.41 7.32 7.42 21.04 16.16 18.34 10.35 16.36 6.87 0.81 4.91 2.73 0.92 0.51 0.00 3.97 13.88 5.42 14.89 37.76 37.19 50.48 19 E2_Da KnownBoundary 0 21.71 9.80 14.64 22.77 15.03 15.50 25.13 17.54 20.31 7.12 0.00 0.00 6.82 0.00 4.45 0.00 4.11 18.07 4.80 30.17 29.04 19.90 36.11 20 E2a_E3b KnownJunction 0 0.00 0.00 0.00 1.93 0.00 2.50 0.00 6.61 1.33 1.67 2.68 0.00 0.00 0.00 0.00 0.00 0.00 5.10 0.00 0.00 16.99 11.14 16.48 21 ER2b ExonRegion 0 9.83 2.62 6.21 5.54 4.52 10.43 11.68 6.26 10.13 3.39 0.00 4.04 4.27 0.00 6.38 0.00 0.95 8.87 5.31 16.12 13.91 8.57 27.15 22 E2b_E3b KnownJunction 0 0.00 0.00 3.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 5.81 2.88 4.01 23 ER3a ExonRegion 0 7.35 0.06 2.45 0.38 2.45 8.91 2.94 6.77 3.12 2.77 0.11 0.12 0.13 0.27 6.85 0.25 3.48 6.06 2.21 4.02 24.24 7.93 19.01 24 E3_Ab KnownBoundary 0 26.97 0.00 2.69 7.62 7.98 16.41 4.46 17.95 9.20 7.87 0.00 0.00 0.00 0.00 8.90 0.00 4.58 15.55 4.80 11.25 28.54 6.25 35.08 25 ER3b ExonRegion 1 114.16 24.84 263.77 163.56 70.02 229.04 54.81 266.52 348.10 238.78 82.74 30.80 20.60 110.31 108.76 140.58 102.02 467.37 214.25 191.32 3731.00 3155.03 3366.10 26 E3a_E4a KnownJunction 1 266.79 55.25 511.96 324.63 183.62 577.57 151.52 491.82 603.93 357.91 83.60 132.04 19.48 196.54 211.51 249.68 89.76 886.27 350.22 279.77 4449.95 6794.29 7695.83 27 ER4a ExonRegion 0 237.86 79.10 415.63 247.28 223.30 805.53 188.40 354.82 532.75 330.14 78.48 77.53 24.16 136.73 112.07 122.69 98.11 546.31 162.79 292.26 4718.65 3772.53 3208.66 28 E4a_E5a KnownJunction 0 261.68 104.98 405.54 267.93 491.26 1762.51 333.65 330.73 574.85 349.47 100.66 79.83 40.09 139.74 132.89 107.75 111.36 380.04 115.02 293.06 5407.06 3578.06 2221.83 29 ER5a ExonRegion 1 367.52 124.03 514.98 325.49 352.92 1579.59 386.59 468.37 727.75 417.76 134.41 109.89 29.36 187.07 162.97 121.00 149.75 514.73 191.15 351.01 6754.56 4899.39 2562.77 30 E5a_E6a KnownJunction 1 523.72 102.02 601.61 358.90 236.42 851.73 280.96 542.18 755.87 462.43 70.65 116.89 26.62 152.57 124.36 104.16 104.35 664.08 164.33 398.40 6159.57 6002.17 2678.52 31 ER6a ExonRegion 1 408.91 94.95 626.03 377.55 211.56 736.90 187.56 518.15 746.81 454.40 94.20 104.48 22.62 183.85 165.76 125.16 89.49 581.84 180.36 380.28 5838.51 6385.06 2966.27 32 E6_Da KnownBoundary 1 608.63 131.16 744.18 506.90 325.21 999.88 257.47 583.13 854.88 507.64 135.82 147.65 42.37 227.50 217.81 157.82 126.88 964.08 307.49 433.36 6742.38 7353.78 4031.44 33 E6a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 ER6b ExonRegion 0 442.21 60.27 732.23 375.47 221.51 735.23 235.45 556.89 743.92 497.57 106.44 79.69 35.87 179.18 183.84 141.14 138.01 526.58 191.60 370.61 6283.16 5480.33 3000.77 35 E6b_E7b KnownJunction 0 447.41 71.50 844.29 423.66 216.89 640.88 290.90 693.74 784.37 592.23 49.70 79.83 43.67 138.09 210.52 138.68 148.57 462.16 263.54 405.68 6426.14 6198.42 2833.80 36 ER7a ExonRegion 0 22.21 4.01 15.47 10.37 8.92 14.51 13.64 24.33 15.74 18.97 2.15 2.84 5.87 2.97 10.93 9.35 8.69 31.63 14.15 25.85 44.73 46.88 38.21 37 E7_Ab KnownBoundary 0 19.63 2.83 25.52 11.15 14.77 24.93 21.24 39.60 18.49 22.86 2.47 0.00 6.82 0.00 8.90 7.60 7.85 43.98 13.55 54.59 28.79 31.54 20.15 38 ER7b ExonRegion 0 589.99 144.67 826.09 493.83 354.71 1028.09 325.32 722.51 923.42 622.89 106.47 92.50 53.80 231.66 229.75 177.73 199.30 767.21 304.97 471.04 7538.58 6891.20 4123.01 39 E7a_E8a KnownJunction 0 1000.03 269.95 1020.63 607.48 583.79 1833.66 512.77 789.28 1091.89 725.89 192.47 144.20 73.70 286.72 236.73 288.30 204.02 1098.35 459.02 453.62 8473.44 8895.21 6351.95 40 E7a_E9a NovelJunction 0 3.19 8.29 16.44 4.46 3.40 33.96 0.00 13.80 31.05 1.56 0.00 6.15 0.00 0.00 0.00 0.00 0.00 19.44 4.52 28.76 118.12 13.29 0.00 41 ER8a ExonRegion 0 694.03 178.03 776.03 449.22 390.25 1328.56 360.80 640.99 881.31 599.07 178.30 105.61 61.25 226.44 199.66 217.33 164.64 1025.22 360.33 406.83 7613.21 6797.26 4988.82 42 E8_Ab KnownBoundary 0 856.97 155.17 603.20 414.43 325.04 1117.88 348.22 602.27 767.44 537.91 161.04 54.92 38.96 218.61 219.92 161.84 112.30 900.74 229.84 415.72 6705.93 4845.71 3870.28 43 ER8b ExonRegion 0 763.36 195.32 624.91 452.61 421.61 1342.80 418.40 636.16 773.13 525.03 109.37 85.54 67.05 218.25 184.61 194.96 138.52 795.05 318.82 360.42 6730.13 5812.76 4347.87 44 E8a_E9a KnownJunction 0 1696.67 287.91 744.27 620.53 707.90 1635.76 537.11 797.49 956.85 621.10 144.62 117.34 65.90 196.72 169.85 197.04 104.16 664.66 253.18 468.39 7057.82 6698.33 4282.07 45 ER9a ExonRegion 0 1987.66 205.98 728.11 596.08 746.19 1620.44 595.51 763.87 945.46 608.51 126.91 113.34 96.13 236.69 199.54 195.30 151.28 609.55 284.94 393.20 7204.57 6924.03 4756.98 46 E9a_E10a KnownJunction 0 2033.03 245.09 934.06 660.12 806.96 1685.00 520.10 902.36 1034.34 614.47 141.67 140.45 110.06 261.88 254.78 229.51 165.03 806.89 422.22 431.89 7545.12 6914.73 5651.46 47 ER10a ExonRegion 0 2136.58 302.51 841.35 604.92 582.84 1281.09 463.82 847.34 953.80 587.97 132.62 125.55 104.02 235.14 212.06 198.40 174.36 722.99 326.88 382.47 7461.74 7272.08 4363.05 48 E10a_E11a KnownJunction 0 2292.04 436.04 891.33 639.38 875.55 1791.81 552.61 947.82 916.51 606.54 155.93 105.78 112.98 190.71 187.03 186.45 157.55 515.10 252.15 303.93 7810.51 6259.53 4105.79 49 I10_SR1 SilentIntronRegion 0 44.48 4.30 11.84 17.81 12.67 12.56 15.75 33.63 21.96 11.81 8.05 0.00 10.30 4.98 13.67 27.36 11.38 78.29 12.52 23.08 24.71 18.17 26.23 50 E11_Aa NovelBoundary 1 76.38 16.84 17.83 10.79 24.70 7.61 33.65 41.61 24.88 10.83 2.05 0.00 33.28 5.36 14.09 15.81 17.39 52.94 14.31 23.14 14.52 13.59 4.35 51 ER11a ExonRegion 0 2794.04 329.39 1211.90 934.31 1072.35 1854.07 715.98 1338.97 1228.75 776.53 154.79 209.10 126.35 238.88 270.71 250.27 167.56 840.25 413.94 433.18 6536.08 8309.67 4932.24 52 E11_Da KnownBoundary 1 793.10 139.58 849.23 677.80 485.31 597.38 237.46 897.47 864.17 461.62 86.39 201.97 40.42 93.24 91.48 112.19 85.18 413.04 429.94 367.33 2778.62 4858.02 2513.94 53 ER11b ExonRegion 0 501.67 79.83 292.61 202.73 268.20 536.19 176.58 258.97 274.45 125.14 31.62 67.18 54.11 50.66 73.15 61.97 46.39 190.32 128.77 119.27 784.28 1629.33 1090.29 54 IG29 Intergenic 0 21.55 5.53 13.21 13.65 18.21 10.18 13.71 24.68 14.21 8.56 6.47 3.82 13.03 4.05 13.44 22.19 14.63 48.43 17.40 21.97 15.38 10.25 27.39 55 IG29_AR3 ActiveIntergenicRegion 0 20.24 3.24 13.82 19.42 19.90 18.51 15.83 23.60 15.64 8.63 5.65 2.37 18.43 1.88 13.94 17.37 11.40 45.14 17.35 17.80 14.63 9.69 26.52 56 IG29_SR2 SilentIntergenicRegion 0 22.70 6.42 13.61 12.59 17.80 7.95 13.44 26.06 14.42 8.90 6.76 4.40 11.29 4.64 13.65 24.41 16.07 51.40 18.17 23.95 16.09 10.86 28.82 57 IG29_AR1 ActiveIntergenicRegion 0 3.75 0.00 0.00 0.00 16.71 6.56 5.85 0.00 0.00 0.00 5.19 0.00 18.02 4.84 5.50 2.66 2.95 1.65 0.00 3.81 3.90 0.00 0.00