Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NPM2 Gene 0 2.25 16.88 61.02 11.55 24.68 94.43 19.13 72.07 84.61 82.79 3.05 5.90 6.68 25.95 21.62 11.65 21.02 25.42 41.35 1.56 0.54 0.45 0.56 2 397940 Transcript 0 0.34 6.11 23.28 6.28 7.39 37.36 6.04 37.90 49.25 51.98 0.60 2.35 1.39 7.40 6.68 7.05 4.73 11.65 15.00 0.50 0.23 0.86 0.39 3 381530 Transcript 0 3.33 0.00 6.12 0.00 6.96 38.16 0.00 11.75 4.54 5.08 0.00 0.00 0.00 10.01 4.45 0.00 12.06 0.00 3.95 0.00 0.00 0.00 0.00 4 289820 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 ER1a ExonRegion 0 0.44 9.25 24.69 7.27 15.87 93.29 16.61 42.19 53.05 49.37 0.99 0.96 4.02 10.24 11.04 8.31 9.96 12.24 21.32 0.44 0.92 0.60 0.31 6 E1a_E2a KnownJunction 0 0.00 9.01 19.87 9.76 0.00 20.84 2.21 53.56 66.52 76.26 0.00 6.30 0.00 2.47 0.00 12.73 0.00 11.48 18.07 0.00 0.00 2.63 0.00 7 ER2a ExonRegion 0 0.32 4.88 33.04 6.62 10.99 23.44 2.58 45.93 53.59 56.04 0.84 2.13 0.04 11.21 7.93 6.51 5.36 15.00 13.30 0.90 0.00 0.21 1.25 8 E2_Ab KnownBoundary 0 3.56 2.96 44.26 10.45 15.11 42.53 6.45 48.84 59.35 65.19 5.37 0.00 0.00 12.07 0.00 7.86 12.25 25.25 24.57 0.00 0.00 0.00 0.00 9 ER2b ExonRegion 0 0.38 8.26 41.98 4.20 5.88 39.68 4.64 38.94 49.58 59.97 1.94 1.77 1.91 12.76 7.62 5.87 11.39 21.89 21.96 0.53 0.00 0.00 0.73 10 E2_Da KnownBoundary 0 0.00 0.00 18.18 3.16 3.40 13.69 2.25 19.10 25.58 17.41 0.00 0.00 0.00 2.47 4.45 0.00 4.77 11.81 11.48 0.00 0.00 0.00 3.93 11 E2a_E2c KnownJunction 0 3.04 2.43 21.79 0.00 7.89 10.33 1.72 16.14 33.74 31.00 0.00 0.00 0.00 4.94 0.00 0.00 4.30 6.14 16.38 0.00 0.00 0.00 0.00 12 ER2c ExonRegion 0 0.60 1.29 15.50 1.45 2.71 11.88 2.75 9.92 23.85 26.24 0.59 0.00 1.52 5.70 7.73 0.66 3.58 7.88 7.32 0.65 0.00 0.00 0.00 13 E2_Ac KnownBoundary 0 0.00 0.00 18.04 3.96 11.63 33.28 1.90 20.29 40.86 33.20 0.00 0.00 6.66 14.54 8.90 3.93 0.00 5.51 0.00 0.00 0.00 0.00 0.00 14 ER2d ExonRegion 0 0.00 1.99 62.21 6.72 15.40 89.24 12.14 56.56 84.59 81.67 1.14 0.00 8.08 24.56 24.14 10.34 21.02 32.54 35.18 2.48 0.00 0.00 0.00 15 E2b_E3a KnownJunction 0 0.00 5.72 78.03 12.92 20.63 134.87 5.61 113.28 139.47 114.75 5.26 0.00 0.00 29.08 52.66 8.12 21.13 32.91 37.93 5.56 0.00 0.00 0.00 16 ER3a ExonRegion 0 3.27 20.24 95.44 14.31 18.85 106.89 9.31 114.74 142.21 128.39 2.72 6.85 5.34 38.77 40.52 12.93 32.47 35.88 41.26 1.19 0.69 0.44 0.00 17 E3a_E4a KnownJunction 0 6.52 18.15 135.77 22.41 23.26 76.89 10.16 165.65 203.70 169.04 4.37 6.15 0.00 34.02 28.56 15.47 34.60 40.46 29.84 0.00 3.15 3.00 0.00 18 E3a_E5a NovelJunction 0 0.00 0.00 18.18 0.00 0.00 19.42 6.18 15.20 8.94 15.77 0.00 0.00 0.00 5.47 4.45 0.00 0.00 3.90 4.80 0.00 0.00 3.06 0.00 19 ER4a ExonRegion 0 6.05 21.29 129.56 22.21 47.68 152.85 26.78 153.70 162.11 168.13 3.97 11.00 11.43 47.80 46.77 21.75 45.85 61.31 57.69 3.78 1.03 1.14 0.00 20 E4a_E5a KnownJunction 0 3.78 24.60 134.71 32.06 61.80 201.99 30.56 185.33 196.76 152.17 8.84 0.00 20.62 46.44 38.57 27.69 35.44 56.83 101.37 3.26 2.90 2.82 0.00 21 ER5a ExonRegion 0 4.55 31.11 138.94 27.68 58.24 184.41 52.40 158.87 162.47 153.29 9.75 12.62 23.10 69.96 39.01 23.84 43.58 45.35 88.44 1.86 0.38 0.33 0.00 22 E5a_E6a KnownJunction 1 6.52 34.73 127.70 23.24 40.32 214.88 62.76 110.49 114.09 151.88 14.37 29.86 27.92 107.01 22.25 26.23 38.43 21.64 96.10 0.00 0.00 0.00 0.00 23 E5a_E7a KnownJunction 0 3.33 0.00 6.12 0.00 6.96 38.16 0.00 11.75 4.54 5.08 0.00 0.00 0.00 10.01 4.45 0.00 12.06 0.00 3.95 0.00 0.00 0.00 0.00 24 ER6a ExonRegion 0 6.88 54.27 109.15 17.02 64.70 195.15 54.90 125.59 133.02 141.16 7.73 15.58 14.63 59.37 37.28 22.53 37.38 42.90 94.99 3.21 1.66 1.14 2.69 25 E6a_E7a KnownJunction 0 6.96 43.87 134.77 23.34 106.88 285.97 76.45 188.90 181.77 169.10 2.21 12.30 13.15 53.56 42.65 19.40 16.83 41.91 68.61 0.00 3.15 2.57 0.00 26 E7_Aa NovelBoundary 0 0.00 3.09 5.50 0.00 0.00 0.00 22.48 11.01 1.79 0.00 0.00 0.00 0.00 2.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER7a ExonRegion 0 6.17 22.72 126.81 17.17 74.84 210.89 31.85 143.81 150.30 116.33 3.64 11.63 19.97 65.61 46.42 19.79 38.57 40.18 52.60 1.22 1.70 0.65 0.00 28 E7_Da NovelBoundary 0 0.00 24.40 35.21 16.35 19.19 56.33 19.21 32.04 30.06 32.50 2.00 18.16 0.00 11.42 4.45 4.36 12.53 8.95 35.11 0.00 0.00 0.00 0.00 29 E7a_E8a KnownJunction 0 3.48 8.81 81.52 11.59 50.25 121.12 12.59 90.81 96.50 65.81 4.90 12.60 19.32 43.20 51.42 26.49 31.04 23.38 25.79 2.68 0.00 0.00 0.00 30 I7 Intron 0 1.53 14.68 26.37 12.10 8.94 38.90 13.27 23.95 28.58 28.85 1.05 1.61 6.10 8.93 7.87 6.17 4.17 6.64 19.84 1.15 0.00 0.00 0.80 31 I7_AR1 ActiveIntronRegion 0 0.59 14.18 39.28 16.00 7.31 49.09 15.68 40.97 38.57 32.98 2.06 4.97 4.15 13.76 10.62 10.73 6.53 7.27 23.05 1.19 0.00 0.00 1.65 32 I7_SR1 SilentIntronRegion 0 2.23 17.84 22.27 13.03 13.97 41.29 15.49 20.95 22.09 26.49 0.74 0.02 10.60 8.65 8.96 5.58 3.37 5.86 23.26 1.32 0.00 0.00 0.61 33 I7_AR2 ActiveIntronRegion 0 1.53 9.77 16.80 5.28 2.00 21.24 6.08 6.71 27.35 28.02 0.25 0.00 0.56 2.99 2.25 1.15 2.51 7.31 9.46 0.81 0.00 0.00 0.00 34 E8_Aa NovelBoundary 0 3.11 5.53 20.46 10.92 4.33 55.20 8.83 15.94 37.70 22.54 0.00 0.00 0.00 9.01 19.28 12.22 0.00 4.39 22.21 0.00 0.00 0.00 0.00 35 ER8a ExonRegion 0 2.30 8.79 119.69 27.10 48.08 83.71 14.88 111.64 131.39 99.98 5.57 20.37 13.93 38.88 48.30 29.55 22.23 27.23 63.89 5.44 0.00 0.00 0.00 36 E8_Da NovelBoundary 0 3.33 6.05 23.45 2.06 23.94 48.10 0.00 0.00 29.77 32.48 0.00 0.00 0.00 4.94 13.35 4.36 0.00 4.31 43.86 0.00 0.00 0.00 0.00 37 E8a_E9a KnownJunction 0 0.00 12.83 91.84 28.80 46.52 76.43 17.58 89.09 108.07 88.97 5.37 24.61 13.31 38.14 68.98 27.77 22.16 19.19 99.96 5.88 0.00 0.00 0.00 38 I8 Intron 0 0.00 5.61 5.87 2.80 2.46 22.75 0.61 3.55 9.30 15.71 0.89 0.00 0.00 2.37 2.98 0.00 0.00 2.53 4.39 0.00 0.00 0.00 0.00 39 I8_AR1 ActiveIntronRegion 0 0.00 5.71 5.98 2.85 2.50 23.17 0.62 3.62 9.46 15.98 0.90 0.00 0.00 2.41 3.03 0.00 0.00 2.58 4.47 0.00 0.00 0.00 0.00 40 E9_Aa NovelBoundary 0 0.00 3.16 13.84 16.22 0.00 2.21 0.00 16.92 42.27 28.77 2.68 0.00 0.00 2.47 0.00 0.00 3.93 6.47 22.21 0.00 0.00 0.00 0.00 41 ER9a ExonRegion 0 3.33 26.69 66.13 17.69 22.97 83.54 19.34 77.73 94.38 86.76 4.91 11.97 5.74 27.05 25.38 12.24 30.94 25.17 67.63 2.50 0.00 0.41 0.58 42 IG47 Intergenic 0 1.78 12.05 41.01 13.11 19.50 69.53 9.14 83.38 97.69 89.40 0.22 1.02 0.75 1.57 1.10 1.00 2.04 16.66 26.43 1.37 0.46 0.44 0.70 43 IG47_SR1 SilentIntergenicRegion 0 1.01 8.43 24.24 8.56 14.56 44.57 6.90 39.49 62.76 54.05 0.06 0.41 0.11 0.62 0.30 0.95 1.25 11.91 21.79 0.65 0.26 0.42 0.24 44 IG47_AR1 ActiveIntergenicRegion 0 1.62 14.79 41.02 13.68 23.42 82.81 9.10 88.56 98.64 87.50 0.15 0.56 1.57 1.60 0.39 1.50 2.69 19.13 25.55 3.45 0.69 0.16 0.60 45 IG47_SR2 SilentIntergenicRegion 0 3.00 15.99 65.99 19.69 24.80 99.13 12.55 145.91 149.82 143.45 0.49 2.18 1.25 2.95 2.63 0.83 2.81 22.56 34.06 1.34 0.66 0.62 1.44 46 IG47_AR2 ActiveIntergenicRegion 0 2.12 6.48 22.06 3.63 11.30 58.75 5.05 32.39 31.93 31.90 0.00 0.00 0.00 0.78 2.58 0.00 3.67 4.31 11.33 0.00 0.00 0.00 0.00