Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FBXO25 Gene 0 50.30 32.59 52.00 53.20 50.65 137.79 35.45 41.92 48.02 29.23 96.57 61.52 42.79 35.37 13.15 41.89 49.33 43.44 18.18 50.57 27.30 42.34 27.43 2 350302 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 447233 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 352684 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 276326 Transcript 0 14.53 43.10 52.75 45.53 50.97 168.48 14.89 36.13 33.16 28.49 4.46 3.89 3.04 0.45 1.41 1.49 2.33 40.33 10.27 42.70 0.16 5.86 0.77 6 382824 Transcript 0 0.00 4.07 1.23 0.00 1.34 11.92 0.00 2.59 1.24 2.29 6.77 2.16 4.69 4.06 0.00 4.46 11.55 0.92 1.59 4.26 5.51 0.00 5.87 7 ER1a ExonRegion 0 1.47 0.99 0.40 0.00 0.54 5.69 0.73 0.00 0.00 0.37 1.11 0.00 0.00 0.55 0.00 0.00 1.20 0.32 0.06 0.26 0.00 0.00 0.06 8 E1_Ab KnownBoundary 0 10.37 3.35 5.50 0.00 12.31 60.53 6.45 2.55 0.00 3.04 9.27 0.00 0.00 2.41 0.00 3.59 8.88 5.97 0.00 2.94 0.00 0.00 0.00 9 ER1b ExonRegion 0 24.29 18.80 4.23 1.87 33.22 189.16 30.65 1.40 3.40 6.38 12.49 0.66 0.93 14.24 5.65 34.30 18.73 4.49 9.50 21.22 12.59 8.62 19.76 10 E1a_E2b KnownJunction 0 0.00 8.68 1.66 0.00 8.32 19.70 0.00 4.76 1.68 2.31 7.16 6.30 6.82 0.00 0.00 3.25 13.65 1.95 4.71 3.26 6.05 0.00 0.00 11 ER2a ExonRegion 0 0.00 4.07 1.23 0.00 1.34 11.92 0.00 2.59 1.24 2.29 6.77 2.16 4.69 4.06 0.00 4.46 11.55 0.92 1.59 4.26 5.51 0.00 5.87 12 ER2b ExonRegion 0 14.59 11.82 34.49 27.52 13.13 40.93 8.45 45.19 38.47 26.01 59.89 23.35 25.59 32.51 9.18 52.25 60.69 18.06 16.36 52.17 13.74 25.79 28.25 13 E2a_E3a KnownJunction 1 16.74 6.38 51.65 45.08 47.37 71.95 8.21 33.97 49.07 27.05 28.64 31.06 32.79 25.96 4.45 98.09 36.19 42.74 17.79 76.25 17.24 16.47 39.01 14 ER3a ExonRegion 0 52.59 29.19 69.26 72.15 177.04 346.68 69.61 71.66 61.55 37.76 159.76 118.64 119.01 45.52 22.51 69.36 81.63 34.27 20.83 78.27 24.05 67.25 41.51 15 E3a_E4a KnownJunction 0 26.30 60.52 79.83 69.89 63.07 160.48 38.69 86.42 58.45 36.02 133.14 140.60 165.25 38.55 38.82 61.69 61.52 28.48 18.54 68.90 24.09 67.36 25.18 16 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER4a ExonRegion 0 46.86 61.70 83.82 70.35 42.17 127.41 23.67 69.69 60.13 33.95 163.25 103.04 133.95 47.29 19.90 44.76 83.25 24.46 13.38 79.02 30.98 66.76 15.86 18 E4a_E5a KnownJunction 1 67.49 45.32 62.74 54.31 52.97 125.61 35.68 39.14 58.74 30.30 193.36 61.07 73.53 31.08 18.05 25.89 87.33 21.22 21.37 87.06 43.43 74.40 0.00 19 ER5a ExonRegion 0 59.19 43.78 83.65 87.20 38.73 158.97 36.77 63.77 75.57 42.39 188.70 135.33 88.71 45.62 22.90 56.63 72.41 22.93 27.33 74.77 42.25 85.67 27.03 20 E5a_E6a KnownJunction 1 112.24 44.86 120.75 124.89 99.41 201.36 38.82 82.60 81.77 34.76 206.00 333.71 111.52 80.52 30.29 77.50 74.71 45.43 42.26 78.94 45.28 106.24 39.86 21 ER6a ExonRegion 0 122.49 56.66 95.63 111.32 135.35 186.58 64.34 72.03 91.25 52.61 255.62 262.72 133.77 86.13 31.73 99.22 138.74 50.26 41.38 89.90 51.29 110.87 59.95 22 E6a_E7a KnownJunction 0 114.32 26.77 123.50 128.12 136.16 248.66 92.17 62.39 102.78 69.60 239.11 194.61 134.57 84.82 19.78 102.88 142.03 49.95 47.25 89.29 39.97 117.38 18.52 23 E7_Aa NovelBoundary 0 20.97 0.00 27.23 32.26 21.48 10.79 13.12 11.46 7.23 7.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 4.35 24 ER7a ExonRegion 0 156.36 68.31 112.75 111.86 106.45 283.90 75.14 83.45 98.54 61.54 249.15 208.07 109.16 86.67 22.13 105.87 122.92 71.28 37.60 75.80 56.97 98.98 54.83 25 E7_Da NovelBoundary 0 27.78 5.79 28.44 32.46 16.81 13.80 3.71 11.42 8.01 20.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.45 3.76 0.00 2.35 8.76 4.35 26 E7a_E8a KnownJunction 0 187.22 94.59 138.61 100.22 143.04 295.63 88.68 88.10 93.72 56.57 264.38 92.88 69.15 102.95 27.44 108.01 142.96 78.02 22.31 88.08 86.36 88.30 27.91 27 I7 Intron 0 7.76 4.04 17.72 16.57 7.47 10.99 7.18 12.50 8.54 9.10 0.61 0.37 0.66 0.28 0.09 0.60 0.94 1.79 0.85 2.82 9.78 12.01 10.58 28 I7_AR1 ActiveIntronRegion 0 9.27 2.37 18.02 18.75 9.62 7.64 10.08 9.10 8.62 12.49 0.00 0.00 2.49 0.52 0.00 0.96 0.00 0.87 1.03 2.33 2.50 12.75 1.90 29 I7_SR1 SilentIntronRegion 0 12.62 3.55 13.64 24.06 17.50 13.30 10.57 7.39 9.13 11.33 0.00 0.00 1.30 0.00 0.00 0.50 0.00 0.01 0.00 3.08 1.29 7.38 5.93 30 I7_AR2 ActiveIntronRegion 0 12.41 6.67 34.47 28.74 11.20 16.84 10.15 21.18 12.84 11.86 1.43 0.64 0.72 0.20 0.11 0.50 1.19 1.79 1.22 2.30 13.96 17.63 14.44 31 I7_SR2 SilentIntronRegion 0 5.65 2.08 9.12 11.00 5.86 7.43 5.71 14.80 6.77 8.63 0.07 0.37 0.79 0.17 0.21 0.30 0.00 1.69 1.05 2.43 6.31 10.15 7.52 32 I7_AR4 ActiveIntronRegion 0 6.19 2.33 12.61 15.77 6.37 13.22 6.93 17.24 9.69 8.66 0.00 0.00 0.49 0.68 0.00 1.13 0.84 2.47 1.22 5.53 15.88 17.18 18.16 33 I7_SR3 SilentIntronRegion 0 6.81 4.16 9.99 10.84 6.69 13.58 8.03 9.74 8.30 12.53 0.23 0.25 0.27 0.28 0.14 0.05 1.38 1.40 0.44 3.80 10.11 11.00 12.77 34 I7_AR5 ActiveIntronRegion 0 4.82 4.29 14.63 12.16 3.47 6.06 3.96 6.37 8.14 7.69 0.63 0.81 0.31 0.00 0.17 0.41 1.04 2.32 1.01 3.18 11.66 13.39 11.15 35 ER8a ExonRegion 0 105.32 66.57 107.51 99.78 84.36 209.15 65.64 77.14 81.62 56.20 222.39 79.98 60.72 79.03 19.09 96.59 98.07 89.66 9.39 71.72 79.45 77.15 43.90 36 E8_Da KnownBoundary 1 90.98 55.32 97.31 109.18 66.64 242.36 72.74 76.15 81.68 55.66 150.88 87.63 39.77 62.04 4.94 94.08 66.20 106.99 4.80 71.91 73.89 64.05 70.85 37 E8a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER8b ExonRegion 0 69.57 62.97 121.12 125.55 91.20 256.17 61.01 74.02 93.96 51.45 212.69 134.77 119.62 86.17 22.15 109.90 82.41 117.21 41.45 84.68 86.20 79.91 74.49 39 E8_Ab KnownBoundary 0 81.57 59.07 121.96 128.56 121.31 234.47 54.14 69.13 95.34 57.46 214.32 113.89 94.15 93.30 23.98 101.77 117.53 113.71 33.88 110.51 66.41 73.24 50.28 40 ER8c ExonRegion 0 76.16 38.74 116.61 105.31 83.57 257.74 55.61 74.24 84.93 50.98 235.43 135.15 79.26 92.33 38.39 96.05 136.60 127.31 51.23 95.89 71.99 66.05 60.45 41 E8b_E9a KnownJunction 0 90.53 32.56 127.26 111.71 110.87 325.38 95.61 77.26 85.10 42.98 293.97 80.28 78.73 120.37 52.04 98.69 125.20 137.79 56.57 104.50 72.22 68.03 79.39 42 ER9a ExonRegion 0 158.08 52.14 130.83 122.42 101.66 273.99 67.11 94.13 78.09 61.99 229.75 69.33 62.01 76.32 34.37 88.48 118.33 138.98 38.33 85.15 68.27 73.81 66.34 43 E9a_E10a KnownJunction 0 13.48 40.39 67.50 73.02 72.75 271.09 27.87 51.96 43.40 42.87 4.74 0.00 0.00 0.00 0.00 4.10 4.77 56.17 4.42 46.15 0.00 2.76 0.00 44 E9a_E11a KnownJunction 0 263.82 19.08 24.10 5.69 52.80 30.15 24.86 16.18 11.57 8.11 165.57 50.27 48.05 45.26 15.20 78.10 89.39 33.70 16.94 4.92 53.81 57.93 46.44 45 E10a_E11a KnownJunction 0 21.34 67.62 61.29 41.22 53.06 154.17 11.00 34.75 37.12 27.10 4.63 7.65 7.47 0.00 4.45 0.00 0.00 40.00 18.35 57.33 0.00 6.25 0.00 46 ER10a ExonRegion 0 23.28 61.84 79.56 65.22 77.50 233.03 17.06 53.65 45.10 43.45 6.66 4.49 4.69 0.00 1.18 1.87 3.18 63.78 16.28 61.39 0.65 6.56 0.44 47 E11_Aa NovelBoundary 0 0.00 6.71 9.11 6.66 3.40 12.21 0.00 2.30 5.56 1.61 4.47 0.00 0.00 2.47 0.00 4.36 0.00 7.92 7.44 0.00 3.03 6.00 20.49 48 ER11a ExonRegion 0 53.14 31.06 56.53 50.52 39.47 115.98 24.75 41.19 49.09 30.13 103.93 32.69 21.55 37.38 20.38 40.59 34.10 55.66 14.80 41.37 35.10 39.07 27.96 49 E11_Da KnownBoundary 0 24.23 15.52 16.85 25.90 29.63 110.28 24.55 6.16 15.89 9.37 9.53 0.00 13.64 0.00 4.45 6.75 0.00 19.11 0.00 30.30 2.59 28.11 11.52 50 ER11b ExonRegion 0 11.15 21.65 15.11 23.09 20.58 66.41 25.16 17.56 27.22 14.50 6.76 11.10 7.88 6.36 1.42 3.58 8.92 23.83 8.56 35.76 5.49 16.64 8.78 51 E11_Db KnownBoundary 0 29.93 22.89 9.52 31.03 45.42 61.33 31.71 23.54 41.93 25.20 10.06 31.36 21.91 8.95 0.00 3.25 15.61 21.43 8.19 21.03 5.62 25.17 14.94 52 ER11c ExonRegion 1 9.95 23.44 11.62 23.46 16.88 59.33 27.56 19.18 34.11 12.99 6.57 19.69 14.90 8.48 0.58 2.63 10.43 10.68 9.17 35.90 2.34 21.50 8.13 53 ER11d ExonRegion 0 0.00 2.57 2.64 2.65 0.56 15.64 3.62 4.18 7.02 0.54 1.83 3.42 0.00 1.80 0.00 0.00 1.39 1.36 2.01 5.94 0.00 7.90 2.63 54 IG5 Intergenic 0 3.87 5.35 5.82 10.57 6.80 17.61 7.55 7.30 11.83 5.86 1.62 1.73 1.31 1.49 0.11 1.23 1.65 8.20 3.74 9.75 2.73 3.78 4.98 55 IG5_SR1 SilentIntergenicRegion 0 7.05 10.34 14.08 16.74 17.35 55.16 25.21 11.74 25.98 7.50 5.93 10.42 7.89 9.02 0.43 5.73 11.57 18.60 10.60 33.74 8.30 14.60 15.18 56 IG5_AR1 ActiveIntergenicRegion 0 7.78 15.53 15.26 22.97 25.06 63.81 29.95 15.77 25.19 11.45 4.87 8.04 5.31 5.99 0.68 2.15 4.52 21.66 8.26 32.65 8.73 13.81 8.67 57 IG5_SR2 SilentIntergenicRegion 0 1.75 11.31 14.54 28.82 20.93 75.10 26.16 27.10 45.71 12.70 8.34 15.14 5.06 6.71 0.00 4.36 11.58 35.67 10.86 43.43 6.80 22.34 20.86 58 IG5_AR2 ActiveIntergenicRegion 0 4.98 18.31 14.00 26.32 22.35 84.25 24.56 21.65 40.73 18.13 9.66 5.06 6.37 6.86 0.35 6.76 9.27 58.93 17.22 55.60 15.27 16.77 21.31 59 IG5_AR3 ActiveIntergenicRegion 0 5.78 23.04 8.68 28.70 17.51 61.15 20.64 16.77 31.32 16.03 5.97 3.57 4.60 5.99 0.00 4.06 5.84 34.24 6.33 38.39 7.11 18.20 12.75 60 IG5_AR4 ActiveIntergenicRegion 0 15.21 8.03 6.31 26.95 9.90 12.72 6.29 13.78 12.88 7.49 0.84 0.00 0.00 0.00 0.00 0.00 0.00 1.52 3.23 3.99 2.87 0.60 1.61 61 IG5_AR8 ActiveIntergenicRegion 0 3.87 1.68 5.28 13.49 2.68 5.82 2.88 14.24 11.24 9.25 0.00 0.00 0.00 0.06 0.00 0.00 0.00 3.70 15.71 3.74 1.90 0.00 6.68 62 IG5_AR12 ActiveIntergenicRegion 0 10.57 19.75 16.11 21.04 15.22 11.22 5.01 8.09 13.16 5.67 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.94 3.25 3.19 2.38 4.38 1.96