Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ANGPT2 Gene 0 76.46 25.85 77.15 31.92 86.73 16.22 41.24 35.48 20.04 71.47 1.44 8.03 19.16 4.59 7.89 5.74 10.51 7.85 5.46 14.55 1.62 23.19 14.66 2 325203 Transcript 0 5.61 1.35 4.16 2.00 4.59 2.09 1.61 3.56 1.13 4.03 0.34 2.82 1.64 1.77 3.37 0.00 2.67 1.85 0.16 3.71 1.47 0.39 1.35 3 415216 Transcript 0 66.68 16.44 64.28 23.61 61.80 12.21 38.82 37.71 21.64 84.70 0.00 0.00 6.66 2.47 0.00 0.00 8.13 2.57 0.00 6.33 0.00 24.31 19.29 4 338312 Transcript 0 6.82 0.00 5.00 0.00 0.00 2.90 4.02 0.00 2.89 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 5 ER1a ExonRegion 0 6.08 1.63 6.51 4.00 2.66 1.62 2.18 7.11 2.26 4.21 0.67 3.56 3.29 3.55 6.75 0.00 5.34 3.05 0.33 7.43 2.94 0.78 2.70 6 E1_Ab KnownBoundary 0 18.15 0.00 7.89 7.36 7.72 2.90 6.67 17.46 8.42 9.13 0.00 5.85 26.95 4.59 4.45 0.00 4.58 6.51 4.24 15.79 2.47 0.00 16.05 7 ER1b ExonRegion 0 59.58 39.20 69.52 20.86 61.70 19.00 51.55 30.23 18.06 65.86 0.16 2.48 7.90 5.77 8.51 2.95 13.48 19.06 9.08 25.23 1.49 24.31 20.05 8 E1_Da NovelBoundary 0 13.63 0.00 8.22 0.00 0.00 0.00 18.37 5.50 4.86 5.10 0.00 0.00 0.00 0.00 5.19 8.37 4.77 4.56 4.24 6.14 0.00 0.00 3.59 9 E1a_E2a KnownJunction 0 19.93 22.10 112.68 29.77 50.00 29.93 49.37 37.83 22.80 87.78 0.00 0.00 19.97 7.36 0.00 0.00 11.87 20.06 18.92 6.20 0.00 42.99 28.60 10 E1a_E3a KnownJunction 0 6.82 0.00 5.00 0.00 0.00 2.90 4.02 0.00 2.89 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 11 Ix_AR5 ActiveIntronRegion 0 17.94 3.20 1.11 0.00 3.82 1.92 3.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 3.82 0.94 0.00 0.15 0.30 3.99 0.20 0.00 12 Ix_AR3 ActiveIntronRegion 0 23.90 3.76 3.38 10.53 11.89 4.07 10.29 6.68 3.92 4.75 2.15 8.25 17.54 1.72 8.67 9.63 8.25 5.96 2.95 9.26 3.88 2.70 5.44 13 Ix_SR2 SilentIntronRegion 0 16.17 3.72 3.38 5.10 5.70 4.40 8.54 7.82 2.24 2.70 0.77 6.55 7.63 1.74 4.04 2.26 4.02 2.07 0.48 12.60 2.78 0.95 2.68 14 Ix_AR2 ActiveIntronRegion 0 16.14 4.44 4.95 7.21 7.60 1.85 8.77 6.21 3.42 4.41 1.98 5.16 3.45 1.83 3.55 5.52 6.13 5.35 4.52 10.71 1.61 1.37 4.81 15 Ix_AR1 ActiveIntronRegion 0 39.84 4.94 2.22 3.70 11.37 1.11 10.45 3.13 1.12 0.00 0.00 4.33 7.04 0.00 3.94 12.63 2.00 4.47 3.87 6.46 1.34 0.00 7.13 16 E2_Aa NovelBoundary 0 27.63 0.00 1.83 8.39 4.16 0.00 17.31 9.78 3.10 8.81 0.00 0.00 19.97 0.00 9.52 3.16 4.49 2.57 0.00 3.26 2.84 0.00 0.00 17 ER2a ExonRegion 0 37.98 16.86 80.77 31.70 55.80 20.34 38.40 46.10 20.84 79.17 0.00 3.30 22.07 4.98 4.69 10.44 20.78 11.25 10.80 22.83 2.88 32.63 22.87 18 E2_Da NovelBoundary 0 25.34 15.85 5.14 9.56 8.06 4.49 6.23 7.19 1.71 8.43 0.00 24.16 0.00 0.00 4.45 27.34 12.53 12.77 4.14 9.52 0.00 0.00 0.00 19 E2a_E3a KnownJunction 0 38.97 15.72 95.62 34.76 56.96 25.61 41.34 56.76 24.04 80.94 0.00 0.00 12.99 5.47 0.00 0.00 30.67 11.28 0.00 9.08 0.00 41.03 16.39 20 Ix Intron 0 17.01 3.85 4.47 7.96 15.82 2.49 9.08 8.75 5.23 5.97 0.57 4.53 11.25 2.44 6.75 8.35 5.07 5.82 2.97 7.89 1.91 1.05 4.03 21 Ix_AR4 ActiveIntronRegion 0 23.09 2.95 4.19 8.24 14.47 3.37 9.32 6.97 4.44 8.42 0.37 5.85 8.66 1.57 5.31 8.61 8.93 5.68 3.38 10.48 2.13 1.41 2.84 22 Ix_SR2 SilentIntronRegion 0 16.27 3.95 4.00 6.20 14.71 2.18 7.79 6.10 4.75 4.65 0.61 4.79 12.72 2.35 6.58 5.78 3.64 4.10 2.02 5.22 1.01 0.58 4.35 23 Ix_AR2 ActiveIntronRegion 0 39.27 4.29 13.48 16.66 18.73 0.00 11.62 18.05 8.92 5.10 0.86 12.99 29.18 9.74 6.45 5.94 2.57 8.21 0.00 7.09 2.20 0.00 8.81 24 Ix_AR1 ActiveIntronRegion 0 19.45 4.45 6.27 8.65 17.89 3.14 9.95 12.25 7.73 6.57 1.13 3.35 12.60 3.08 10.09 11.94 6.53 10.32 3.95 8.70 4.33 0.96 5.41 25 Ix_SR1 SilentIntronRegion 0 10.77 4.03 3.73 11.42 18.31 1.79 11.43 12.76 4.30 6.48 0.00 4.35 9.18 2.70 4.85 10.25 3.32 4.71 3.83 11.26 0.88 2.06 2.91 26 ER3a ExonRegion 0 46.75 28.89 92.39 38.17 101.28 24.97 64.66 58.57 25.28 79.50 0.00 3.80 22.37 3.73 2.57 4.07 22.86 10.60 5.04 20.13 0.92 35.32 18.34 27 E3_Da NovelBoundary 0 12.89 15.06 5.47 11.99 12.31 0.00 24.73 8.79 9.40 6.63 0.00 6.15 6.82 0.00 6.30 7.69 4.30 8.95 8.47 16.68 0.00 3.12 4.35 28 E3a_E4a KnownJunction 0 41.41 20.72 80.87 40.82 109.17 41.74 62.93 52.45 22.16 87.06 0.00 0.00 27.27 2.47 0.00 0.00 22.25 4.48 3.58 8.37 0.00 39.07 7.94 29 Ix Intron 0 27.63 4.62 4.37 5.50 13.09 2.02 11.77 5.04 4.06 3.60 0.93 6.24 14.32 1.39 7.19 6.25 4.88 4.08 2.45 7.58 1.33 1.35 3.12 30 Ix_SR3 SilentIntronRegion 0 12.16 2.34 6.71 5.60 14.14 0.84 10.65 11.23 3.81 5.50 0.00 4.10 16.80 0.00 3.45 10.23 6.82 5.69 2.20 10.75 2.53 1.44 2.02 31 Ix_AR6 ActiveIntronRegion 0 6.91 1.82 4.45 4.16 14.34 4.92 9.64 7.10 1.43 1.69 0.86 11.28 18.43 1.84 2.82 7.33 4.63 1.47 1.43 7.84 0.99 0.93 1.31 32 Ix_AR2 ActiveIntronRegion 0 58.51 9.59 4.95 9.33 19.14 2.42 17.17 6.12 7.43 5.48 0.74 2.53 14.38 1.22 10.47 6.05 6.74 6.19 2.94 8.56 2.30 0.57 4.34 33 Ix_AR1 ActiveIntronRegion 0 95.24 19.83 11.03 11.24 9.03 1.83 26.15 8.64 7.72 6.74 5.80 4.33 11.14 1.62 11.61 0.37 6.60 4.62 3.19 10.64 4.41 0.00 12.48 34 Ix_SR1 SilentIntronRegion 0 24.37 4.02 3.91 4.79 11.78 1.94 10.95 3.88 3.59 3.08 1.09 7.17 13.79 1.54 7.39 5.84 4.25 3.60 2.51 7.04 0.99 1.58 3.13 35 ER4a ExonRegion 0 46.46 22.17 90.17 45.12 86.31 16.62 47.23 55.70 40.41 110.23 0.42 11.82 21.52 3.89 2.24 1.95 16.72 5.09 2.88 14.97 0.96 42.34 21.26 36 E4a_E5a KnownJunction 0 28.60 5.46 33.03 14.42 20.63 8.23 10.38 27.07 13.63 40.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 12.61 0.00 37 E4a_E5b KnownJunction 0 66.68 16.44 64.28 23.61 61.80 12.21 38.82 37.71 21.64 84.70 0.00 0.00 6.66 2.47 0.00 0.00 8.13 2.57 0.00 6.33 0.00 24.31 19.29 38 ER5a ExonRegion 0 35.45 11.69 56.37 21.12 38.13 6.42 19.20 35.87 24.08 62.22 0.00 0.00 4.69 0.41 0.00 0.00 4.13 3.70 0.00 4.79 0.00 18.23 6.61 39 ER5b ExonRegion 0 82.73 38.19 94.97 35.60 100.18 39.94 61.64 45.57 40.64 121.25 1.55 0.00 4.47 4.41 3.70 7.16 12.19 12.61 1.93 15.08 0.00 41.13 20.60 40 E5_Da NovelBoundary 0 9.78 2.96 1.48 5.49 3.65 0.00 9.41 2.18 1.79 3.71 0.00 0.00 6.82 0.00 5.19 10.60 4.77 2.57 0.00 14.13 5.13 0.00 10.84 41 E5a_E6a KnownJunction 0 78.09 39.20 84.50 26.37 151.36 21.29 62.67 49.74 39.24 113.81 0.00 0.00 13.64 0.00 0.00 0.00 4.02 8.37 4.80 8.37 0.00 35.64 24.84 42 Ix Intron 0 6.77 2.15 3.12 3.95 7.23 2.23 10.25 4.14 3.51 4.13 0.91 6.12 15.11 1.96 3.00 6.21 5.69 3.79 2.04 10.47 1.90 2.15 3.68 43 Ix_SR2 SilentIntronRegion 0 4.95 1.84 2.45 3.28 6.70 1.66 9.99 3.32 3.44 3.69 0.77 6.40 15.33 1.57 2.08 6.09 4.31 3.14 1.44 10.81 2.00 2.23 3.68 44 E6_Aa NovelBoundary 0 65.12 8.68 1.45 7.52 12.73 8.18 10.07 14.01 8.54 10.26 2.47 0.00 26.46 2.47 0.00 0.00 18.14 5.72 24.00 8.31 2.78 0.00 4.35 45 ER6a ExonRegion 0 64.04 22.07 102.55 32.15 133.50 21.16 51.35 40.35 28.20 106.88 0.00 3.57 11.17 5.30 4.95 2.97 9.81 9.22 5.56 10.16 1.15 31.38 28.30 46 E6_Da NovelBoundary 0 9.26 0.00 14.46 5.69 0.00 2.90 12.94 7.68 6.02 3.12 0.00 0.00 21.91 4.59 8.90 4.36 8.60 6.59 0.00 17.90 0.00 0.00 3.33 47 E6a_E7a KnownJunction 0 66.68 36.77 137.25 36.09 138.03 10.39 69.82 60.95 27.55 104.71 0.00 0.00 0.00 7.18 0.00 0.00 9.16 6.26 0.00 11.38 0.00 44.46 11.87 48 E7_Aa NovelBoundary 0 23.93 3.16 15.94 4.79 24.96 5.45 18.90 9.57 2.75 10.31 0.00 0.00 26.13 2.47 0.00 3.42 0.00 2.07 13.84 8.95 3.15 0.00 0.00 49 ER7a ExonRegion 0 102.64 31.89 139.05 45.23 126.79 24.31 54.13 60.38 36.62 122.27 0.00 7.86 24.35 4.38 8.44 7.26 10.46 10.04 7.67 13.64 4.01 34.82 24.14 50 E7_Da NovelBoundary 0 32.38 2.70 13.04 7.33 11.38 2.44 3.80 24.81 2.58 3.09 0.00 0.00 13.64 0.00 0.00 4.36 0.00 1.99 10.82 3.26 13.96 0.00 3.59 51 E7a_E8a KnownJunction 0 189.74 37.62 163.71 43.35 182.77 60.25 71.90 63.13 38.40 136.65 0.00 0.00 27.11 11.83 0.00 0.00 8.79 6.55 3.48 0.00 0.00 39.68 6.74 52 Ix_SR2 SilentIntronRegion 0 19.14 3.85 7.75 8.08 10.81 2.07 14.34 10.55 4.80 7.86 1.47 3.50 13.37 2.26 9.88 10.09 8.36 8.06 1.81 13.70 2.36 1.61 3.48 53 Ix_AR1 ActiveIntronRegion 0 16.62 2.57 6.61 3.33 13.48 0.00 13.53 5.12 5.77 5.48 1.52 10.98 15.18 1.78 4.38 7.52 8.07 6.19 5.78 8.99 1.61 0.84 5.36 54 E8_Aa NovelBoundary 0 14.82 0.00 9.88 5.99 4.33 0.00 30.38 22.96 3.94 8.35 2.32 18.76 13.64 0.00 15.20 12.39 18.51 1.74 3.95 5.69 0.00 0.00 3.84 55 ER8a ExonRegion 0 155.25 31.25 149.82 41.46 109.66 30.07 46.41 49.00 31.81 117.96 0.00 6.15 26.53 3.25 2.72 3.47 18.17 17.67 9.12 8.85 0.86 27.50 34.66 56 E8_Da NovelBoundary 0 32.45 0.00 7.27 6.03 0.00 0.00 6.40 12.40 4.92 5.43 4.84 20.26 0.00 2.47 8.90 4.10 4.49 0.00 0.00 18.15 0.00 0.00 0.00 57 E8a_E9a KnownJunction 0 109.43 61.70 136.81 42.22 57.72 15.90 39.48 34.79 26.68 119.08 0.00 0.00 30.03 0.00 0.00 0.00 9.07 9.74 4.05 0.00 0.00 39.43 30.73 58 Ix_AR2 ActiveIntronRegion 0 14.89 2.86 3.00 6.43 8.16 2.36 8.23 7.85 4.96 4.21 1.36 4.77 21.83 0.99 6.88 6.27 2.32 4.20 2.61 9.23 0.52 0.98 3.44 59 Ix_SR2 SilentIntronRegion 0 10.61 2.18 3.27 2.91 8.14 2.30 6.63 2.77 0.99 5.82 0.35 0.00 15.95 1.25 4.03 3.19 3.54 1.81 1.71 8.00 1.58 1.49 0.53 60 Ix_SR1 SilentIntronRegion 0 15.48 2.20 4.75 4.76 5.92 0.76 7.84 5.51 2.51 3.83 1.59 3.77 9.83 1.90 4.17 6.42 5.10 3.53 1.72 5.54 1.64 0.70 4.54 61 E9_Aa NovelBoundary 0 40.08 0.00 9.25 10.89 14.86 2.90 6.36 8.54 2.55 8.73 0.00 0.00 0.00 5.12 0.00 14.95 3.46 4.44 4.80 5.31 6.05 2.33 3.33 62 ER9a ExonRegion 0 83.41 24.45 73.45 33.02 91.41 14.07 38.50 33.07 17.53 65.68 2.03 9.81 21.73 4.57 8.97 6.63 8.70 5.45 4.93 12.89 1.60 20.44 11.64 63 ER9b ExonRegion 0 5.15 1.06 1.81 0.00 6.51 2.55 1.04 0.00 0.00 3.84 0.00 2.07 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00