Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC093726.2 Gene 0 26.79 10.81 9.77 8.22 20.42 13.94 15.80 15.07 38.10 8.03 21.74 28.92 31.83 36.70 25.75 43.84 30.80 8.21 8.09 9.16 23.81 11.04 15.61 2 411526 Transcript 0 3.80 2.97 1.99 1.24 7.26 1.40 3.04 3.10 5.93 0.38 2.68 12.97 0.87 14.60 3.98 4.41 4.47 1.02 0.00 2.44 9.32 6.98 2.49 3 397551 Transcript 0 22.14 13.61 11.04 9.99 19.15 12.43 18.76 17.87 15.15 9.76 13.44 22.26 17.53 22.71 21.91 32.84 17.27 3.45 8.66 8.28 5.91 6.45 8.29 4 449486 Transcript 0 17.69 5.63 3.16 3.00 10.37 8.94 7.60 5.99 29.20 3.86 12.31 18.90 21.26 27.42 12.90 21.94 23.61 6.55 3.52 4.02 16.20 4.23 10.69 5 ER1a ExonRegion 0 1.38 1.93 0.00 0.00 2.01 1.38 0.26 0.00 0.99 0.00 0.77 0.00 0.00 8.85 0.00 2.53 4.95 0.00 0.00 0.85 5.62 1.77 0.00 6 ER1b ExonRegion 0 13.47 2.03 0.00 0.37 9.49 9.67 3.97 1.26 14.04 1.67 6.85 0.00 0.00 22.89 9.50 18.37 15.90 0.00 0.00 2.13 21.44 6.25 6.67 7 ER1c ExonRegion 0 13.72 0.18 2.22 1.44 8.53 6.93 4.68 5.30 38.87 2.84 23.36 11.07 3.85 28.47 14.17 43.57 28.71 1.56 0.00 2.04 27.99 13.50 11.55 8 E1a_E2a KnownJunction 1 0.00 0.00 5.26 1.96 0.00 2.16 1.99 1.89 58.71 0.00 23.90 17.56 6.82 41.50 10.26 52.55 8.13 2.24 0.00 2.43 35.46 13.90 24.41 9 E1a_E3a NovelJunction 0 0.00 0.00 3.10 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.95 0.00 4.59 0.00 7.43 12.44 0.00 0.00 0.00 0.00 3.00 10.50 10 E2_Aa NovelBoundary 0 14.37 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.00 1.58 2.37 0.00 0.00 0.00 4.45 0.00 0.00 1.95 0.00 0.00 6.30 0.00 3.76 11 ER2a ExonRegion 0 3.50 0.00 4.12 1.52 12.76 11.69 5.24 1.93 45.47 1.20 24.71 17.51 14.82 30.11 21.70 29.16 16.50 2.46 0.00 2.78 17.85 8.39 18.43 12 E2a_E3a KnownJunction 0 12.52 0.00 4.02 2.00 19.52 16.18 16.91 4.19 37.38 3.12 6.95 6.30 6.98 26.43 15.20 19.82 8.51 0.00 0.00 3.20 29.84 2.33 26.46 13 E3_Aa NovelBoundary 0 120.76 122.94 98.93 106.65 192.53 109.54 177.80 124.33 92.71 74.41 129.45 99.33 120.12 187.77 168.12 129.88 76.76 41.58 93.37 44.17 35.09 50.76 31.58 14 ER3a ExonRegion 0 44.69 13.78 15.41 13.88 26.51 15.05 17.34 23.75 71.60 11.70 36.52 44.61 63.97 74.12 42.61 77.54 52.10 11.74 9.19 9.66 48.16 20.29 21.72 15 E3_Da KnownBoundary 0 32.38 9.54 10.70 16.51 18.34 14.37 14.57 21.24 12.07 27.02 20.95 37.81 12.99 29.31 33.01 42.13 8.98 2.11 4.80 14.45 2.53 6.18 0.00 16 E3a_E4a KnownJunction 1 27.56 0.00 1.39 0.00 0.00 5.51 4.28 4.76 36.49 1.32 9.48 43.66 19.64 49.27 13.35 49.13 23.19 4.81 0.00 2.56 23.17 17.45 4.35 17 ER3b ExonRegion 0 22.14 13.61 11.04 9.99 19.15 12.43 18.76 17.87 15.15 9.76 13.44 22.26 17.53 22.71 21.91 32.84 17.27 3.45 8.66 8.28 5.91 6.45 8.29 18 E3_Db NovelBoundary 0 13.41 20.19 5.44 5.03 54.75 8.69 35.02 14.75 31.94 11.15 18.00 18.91 20.45 26.61 8.90 27.77 12.90 6.55 4.80 2.94 0.00 8.88 0.00 19 Ix Intron 0 12.70 6.75 6.55 7.50 17.92 10.71 20.85 9.94 15.68 8.52 11.60 29.05 18.68 19.19 11.27 18.47 13.62 2.51 7.68 4.56 3.78 5.92 5.82 20 Ix_AR1 ActiveIntronRegion 0 12.73 6.77 6.57 7.52 17.96 10.73 20.89 9.96 15.71 8.53 11.62 29.10 18.72 19.23 11.30 18.51 13.64 2.51 7.70 4.57 3.78 5.93 5.83 21 E4_Aa NovelBoundary 0 3.78 0.00 0.00 2.53 11.80 14.03 14.22 2.05 12.33 10.42 7.79 12.30 6.33 7.06 0.00 0.00 0.00 2.03 4.33 0.00 0.00 5.69 3.76 22 ER4a ExonRegion 0 20.91 4.96 10.24 5.81 19.11 19.53 13.17 7.95 47.67 5.33 33.12 29.27 32.55 37.29 18.58 48.02 34.31 11.89 7.39 4.45 24.47 12.28 10.96 23 E4_Da NovelBoundary 0 14.97 0.00 4.35 12.99 15.87 0.00 18.37 14.91 24.39 12.65 5.21 22.81 12.82 7.06 14.09 4.36 8.70 8.58 0.00 5.69 5.37 0.00 15.62 24 E4a_E5a KnownJunction 0 16.89 0.00 0.00 1.73 4.33 2.90 0.00 0.00 13.02 0.00 7.05 6.30 7.63 18.42 9.52 4.10 18.61 0.00 0.00 0.00 11.37 0.00 3.93 25 E4a_E5b KnownJunction 0 0.00 3.35 3.02 1.63 4.07 0.00 2.21 0.00 7.55 0.00 2.16 18.61 0.00 16.54 0.00 0.00 3.83 1.70 0.00 2.68 5.75 5.88 4.01 26 E5_Aa NovelBoundary 0 32.82 6.71 3.19 1.56 15.87 18.00 6.23 6.61 9.49 1.67 7.05 0.00 6.66 12.01 6.30 7.26 8.88 4.68 4.05 0.00 8.03 2.39 8.02 27 ER5a ExonRegion 0 14.73 11.52 2.63 3.55 4.07 14.98 5.74 9.51 23.65 3.63 16.47 22.19 25.60 33.80 11.24 18.33 23.11 3.58 3.05 2.75 22.04 13.11 5.87 28 E5_Ab KnownBoundary 0 21.49 11.84 3.61 8.62 8.23 27.77 11.53 13.35 41.75 7.74 27.53 31.51 28.08 34.79 9.64 28.80 21.22 9.78 0.00 2.81 35.58 19.23 0.00 29 ER5b ExonRegion 0 7.39 5.97 5.15 4.13 9.57 10.80 7.89 15.29 33.95 3.96 18.77 18.01 19.75 26.28 11.95 23.78 23.48 6.77 2.15 2.18 34.79 10.94 8.30 30 E5_Da KnownBoundary 1 128.32 107.09 89.74 86.30 111.38 98.13 106.39 55.12 87.59 41.88 198.31 123.64 47.40 161.46 156.99 177.82 180.93 64.42 84.61 30.23 59.80 63.19 60.69 31 E5a_E6a KnownJunction 0 3.33 0.00 0.00 0.00 0.00 0.00 3.93 2.18 15.83 1.18 9.90 0.00 6.82 15.30 0.00 7.35 12.72 0.00 0.00 0.00 15.01 0.00 4.10 32 ER5c ExonRegion 0 10.02 3.62 2.97 2.09 15.70 2.81 6.65 9.30 9.25 1.15 5.11 20.30 2.61 18.41 11.93 10.70 4.62 1.36 0.00 3.78 16.60 13.29 3.46 33 E5_Db NovelBoundary 1 25.41 6.31 21.32 25.70 39.73 22.37 41.69 11.87 32.90 14.13 0.00 24.16 20.13 15.36 9.52 15.12 0.00 2.24 8.28 5.82 2.97 10.78 4.01 34 Ix Intron 0 17.69 15.53 9.99 18.69 23.49 9.93 20.78 14.25 29.22 10.07 9.30 28.32 36.96 16.77 9.20 7.69 9.13 1.94 2.87 3.71 4.77 12.15 4.24 35 Ix_AR1 ActiveIntronRegion 0 18.38 23.84 6.72 10.37 10.95 6.69 21.55 11.84 16.54 6.80 7.66 8.18 25.45 14.53 9.51 9.58 6.79 0.00 0.00 1.10 2.00 9.88 5.87 36 Ix_SR1 SilentIntronRegion 0 17.69 15.00 10.24 19.30 24.41 10.17 20.78 14.45 30.16 10.32 9.44 29.76 37.84 16.96 9.20 7.58 9.32 2.07 3.08 3.90 4.97 12.34 4.14 37 E6_Aa NovelBoundary 1 46.38 9.08 7.78 18.61 26.57 29.76 17.71 9.32 28.62 10.91 14.90 0.00 46.26 33.73 8.90 15.12 12.81 4.44 12.89 10.55 8.22 5.63 8.54 38 ER6a ExonRegion 0 8.49 5.12 2.18 1.93 5.55 12.32 14.14 3.39 24.17 5.42 11.22 19.14 21.31 33.61 15.47 27.48 36.39 7.37 6.02 5.04 23.81 4.06 8.70 39 E6_Da NovelBoundary 0 11.63 5.20 6.62 8.12 12.48 13.29 17.00 18.20 25.67 3.17 14.27 11.70 26.95 11.77 0.00 51.70 34.88 13.72 0.00 0.00 10.87 11.02 0.00 40 E6a_E7a KnownJunction 0 12.45 0.00 0.00 2.03 12.65 4.20 3.62 2.30 22.42 1.67 5.11 13.95 13.64 21.19 4.45 18.46 13.46 2.32 0.00 0.00 11.06 0.00 12.21 41 E7_Aa NovelBoundary 0 13.78 0.00 7.84 5.19 24.45 0.00 20.93 0.00 24.02 13.00 7.05 17.71 13.31 21.43 0.00 15.47 25.15 4.31 3.67 6.52 8.40 0.00 7.77 42 ER7a ExonRegion 0 19.90 8.37 9.17 2.90 9.19 13.18 2.76 10.39 51.34 3.14 17.11 27.41 37.18 31.79 18.85 34.42 36.26 12.72 4.21 5.19 12.19 3.01 16.39 43 E7_Da NovelBoundary 0 28.23 21.11 6.24 9.09 12.48 5.11 14.22 16.51 32.78 7.52 14.85 12.45 13.64 19.25 5.56 11.96 30.48 5.18 0.00 5.82 11.43 6.25 8.11 44 E7a_E8a KnownJunction 0 28.75 5.39 1.21 2.73 14.60 5.00 5.43 5.67 48.03 6.07 10.95 24.76 19.48 36.02 12.61 23.07 16.36 12.81 0.00 0.00 10.01 3.12 8.19 45 Ix Intron 0 23.80 7.43 3.79 7.13 16.10 7.10 12.81 7.38 17.53 5.39 8.17 34.22 29.00 14.78 5.07 10.22 13.95 1.52 2.28 3.35 5.05 9.70 4.21 46 Ix_AR1 ActiveIntronRegion 0 13.73 12.58 7.00 6.58 14.99 7.57 10.54 3.80 14.64 2.52 7.40 25.90 21.63 21.03 6.64 15.77 23.34 2.99 0.94 3.14 5.20 3.69 5.19 47 Ix_AR3 ActiveIntronRegion 0 24.07 5.56 3.25 5.29 14.61 5.97 11.71 9.93 16.88 6.79 7.01 31.39 25.11 13.50 3.59 8.01 5.91 0.88 2.76 2.45 4.00 12.30 3.24 48 Ix_SR3 SilentIntronRegion 0 44.42 9.31 3.28 12.34 23.55 6.72 11.51 8.89 28.04 6.48 15.93 52.44 48.16 10.41 7.89 11.47 16.18 1.80 0.00 7.28 8.60 13.23 7.36 49 Ix_AR4 ActiveIntronRegion 0 27.04 4.54 1.02 11.04 18.88 10.71 21.74 4.29 18.52 5.04 8.61 47.02 42.77 12.75 5.88 8.39 24.60 1.16 4.51 4.28 6.22 9.14 4.00 50 E8_Aa NovelBoundary 1 25.63 17.43 2.84 3.56 27.59 7.72 20.93 2.34 28.67 2.28 6.74 36.91 40.42 30.90 9.64 29.56 37.96 6.92 9.60 8.95 14.27 7.72 12.98 51 ER8a ExonRegion 0 36.96 14.67 10.06 9.16 32.53 18.98 25.16 14.50 35.13 9.79 20.68 37.43 38.46 29.23 31.08 42.31 31.97 13.63 14.89 19.15 24.09 10.51 26.10