Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 INSIG1 Gene 0 88.45 70.60 63.09 34.08 136.20 84.27 82.95 130.50 111.17 88.13 1027.04 243.98 494.37 423.94 757.58 853.42 1412.14 132.79 65.07 93.61 189.52 462.32 331.63 2 340368 Transcript 0 3.17 1.02 0.00 0.00 1.78 0.29 0.66 0.00 0.00 0.29 4.03 1.08 4.69 2.86 10.88 3.83 4.95 0.19 1.53 0.00 0.00 1.52 1.28 3 425172 Transcript 1 0.02 2.37 1.25 0.00 1.00 0.36 6.69 2.70 3.73 4.76 49.28 0.00 10.17 10.01 25.23 17.22 51.80 29.58 3.47 3.14 13.64 1.38 6.93 4 344756 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 342407 Transcript 1 2.96 3.35 1.24 1.80 0.00 0.00 0.00 3.61 4.69 1.13 45.91 17.11 0.00 19.84 15.95 31.79 40.58 2.57 0.00 2.88 3.15 5.76 7.94 6 476756 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 468307 Transcript 0 1.82 2.60 1.99 1.40 5.68 2.77 7.07 4.86 3.16 2.81 70.69 27.83 80.28 26.22 25.18 50.37 113.99 5.63 2.75 8.04 13.59 55.21 24.61 8 IG19_AR3 ActiveIntergenicRegion 0 4.98 4.19 10.62 9.56 15.12 16.55 11.22 21.22 18.06 16.36 48.88 8.91 12.27 23.11 26.37 26.80 26.02 15.33 19.83 5.83 5.82 22.26 3.09 9 IG19_SR4 SilentIntergenicRegion 0 3.23 4.52 9.89 6.78 10.70 48.05 14.70 19.14 18.80 17.00 50.74 12.12 3.87 17.30 21.32 22.22 14.61 22.87 14.02 7.66 5.18 15.47 5.43 10 IG19_AR4 ActiveIntergenicRegion 0 6.35 10.90 8.77 6.54 13.27 39.61 16.79 26.89 20.45 17.07 53.50 19.57 18.76 11.56 26.69 28.29 5.68 28.46 14.91 7.91 8.81 24.50 4.11 11 IG19_AR5 ActiveIntergenicRegion 0 5.82 12.20 9.29 7.84 9.14 33.01 10.92 23.19 21.31 9.65 52.67 16.96 15.63 12.18 25.39 28.73 0.00 31.26 16.72 8.51 4.77 21.36 5.87 12 IG19_AR6 ActiveIntergenicRegion 0 2.50 2.74 5.91 3.97 6.85 13.32 8.21 12.73 14.87 10.33 38.69 6.85 4.65 20.73 25.61 21.18 18.83 11.81 8.41 4.93 7.00 9.56 5.60 13 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.89 0.58 0.00 0.00 0.00 0.00 3.22 0.00 0.00 0.84 0.00 1.71 0.00 0.38 3.07 0.00 0.00 0.96 2.56 14 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 4.33 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 1.87 0.00 0.00 0.00 0.00 0.00 16 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 2.68 1.83 0.00 0.00 0.00 0.86 2.42 0.00 0.00 4.87 0.00 2.97 0.00 1.85 6.37 0.00 0.00 2.08 2.94 17 ER1c ExonRegion 0 2.99 0.00 0.48 1.05 3.20 5.47 1.21 0.19 3.26 1.19 17.81 0.00 0.00 13.98 17.30 26.38 24.52 3.07 2.62 2.28 5.59 6.10 17.41 18 E1_Ad KnownBoundary 0 7.26 0.00 1.54 2.00 3.99 8.29 4.15 0.00 8.22 1.21 14.27 0.00 6.33 4.94 0.00 12.13 17.86 2.11 0.00 3.26 12.05 8.51 12.63 19 ER1d ExonRegion 1 26.00 0.00 1.86 1.25 2.45 19.49 15.04 5.98 5.33 3.39 359.80 0.00 5.09 191.21 351.34 526.19 618.26 32.26 11.01 26.57 91.23 138.94 286.28 20 E1_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 7.95 1.77 0.00 1.79 1.02 9.32 0.00 0.00 0.00 8.90 3.85 0.00 12.93 0.00 0.00 5.19 0.00 3.76 21 E1a_E2a KnownJunction 1 37.27 3.29 4.79 3.36 0.00 19.36 5.92 20.41 11.05 11.23 90.18 0.00 12.34 35.43 22.25 50.67 154.18 45.18 4.71 19.62 33.24 19.90 15.96 22 ER1e ExonRegion 0 0.03 1.53 1.03 0.00 2.01 0.73 9.05 1.09 2.34 2.70 40.22 0.00 7.04 11.01 28.20 26.40 40.58 26.49 6.93 6.29 9.85 2.76 13.86 23 E1b_E2a KnownJunction 1 0.00 3.22 1.48 0.00 0.00 0.00 4.33 4.31 5.12 6.82 58.33 0.00 13.31 9.01 22.25 8.03 63.02 32.67 0.00 0.00 17.42 0.00 0.00 24 ER2a ExonRegion 1 6.31 5.68 17.26 6.99 14.57 16.25 13.53 39.78 43.66 37.60 580.21 41.12 111.07 307.64 457.58 658.72 817.58 171.69 41.71 64.08 171.13 196.98 243.30 25 E2_Ab KnownBoundary 1 29.78 15.39 53.22 18.95 62.73 45.54 47.92 122.77 128.88 106.37 1383.61 72.62 107.62 746.07 991.53 1382.29 2312.29 286.11 147.96 128.09 396.24 573.88 450.12 26 ER2b ExonRegion 1 20.06 31.61 55.01 24.02 35.61 48.15 31.93 107.62 117.41 101.40 1697.27 77.79 209.80 585.34 718.31 960.09 2583.97 288.62 82.11 129.61 452.04 333.96 367.39 27 E2_Da KnownBoundary 1 16.89 65.32 46.66 35.29 61.12 61.90 37.49 103.34 104.19 100.28 1566.08 145.40 382.77 642.54 798.44 1115.43 2240.95 283.62 85.56 167.53 389.32 351.42 387.12 28 ER2c ExonRegion 1 22.37 53.45 59.14 32.19 37.97 56.28 32.50 131.86 135.33 114.69 1303.69 110.71 292.35 590.21 745.83 893.05 1939.43 314.29 58.93 149.44 374.79 339.27 289.19 29 E2b_E3a KnownJunction 1 42.01 52.49 87.87 40.32 40.15 39.41 41.38 178.22 166.09 146.16 1251.11 102.63 410.04 612.52 947.65 981.62 1977.56 478.08 52.24 166.82 392.10 429.43 348.37 30 E2b_E4b KnownJunction 0 2.96 3.35 1.24 1.80 0.00 0.00 0.00 3.61 4.69 1.13 45.91 17.11 0.00 19.84 15.95 31.79 40.58 2.57 0.00 2.88 3.15 5.76 7.94 31 ER3a ExonRegion 0 54.32 43.96 89.04 29.33 79.95 70.21 64.24 148.15 154.74 134.49 2223.66 272.86 934.21 889.67 1537.32 2462.55 3648.51 420.63 136.82 176.19 586.55 741.68 784.85 32 E3_Ab KnownBoundary 0 69.72 42.69 103.04 33.76 129.71 111.70 92.65 149.18 158.13 133.61 2441.88 379.02 1204.47 1046.33 2006.68 2860.28 3872.65 408.61 156.24 165.48 631.24 808.16 946.85 33 ER3b ExonRegion 0 42.02 46.40 80.89 47.04 73.21 74.41 60.47 115.31 136.34 105.17 1789.40 193.94 528.56 796.15 1063.05 1692.14 2581.94 391.19 122.50 153.29 442.18 572.21 657.56 34 E3a_E4a KnownJunction 0 30.45 56.31 69.07 62.66 103.23 97.22 70.17 125.69 156.74 96.17 1620.31 240.38 709.04 856.85 1174.98 1866.09 2532.21 401.06 109.65 215.21 390.74 679.57 716.37 35 ER4a ExonRegion 0 39.42 62.97 65.61 53.40 130.50 113.88 88.32 147.06 171.63 119.42 1830.57 210.04 584.40 750.92 995.58 1513.19 2627.89 323.48 81.16 180.18 397.09 540.26 563.27 36 E4_Da KnownBoundary 0 0.00 11.77 5.85 0.00 8.66 0.00 14.79 3.98 8.22 3.06 82.02 13.95 51.78 26.66 32.63 46.40 93.03 8.33 0.00 6.01 15.20 30.07 16.73 37 E4a_E4b KnownJunction 1 37.71 95.44 65.67 70.95 107.13 157.24 109.08 179.66 219.18 147.88 2090.53 196.86 870.07 906.12 1269.80 1920.69 2783.26 352.31 101.46 182.99 356.70 780.36 727.89 38 ER4b ExonRegion 0 1.76 2.51 3.17 1.09 7.73 2.49 5.86 8.19 3.91 2.89 87.68 30.44 71.86 22.53 28.27 58.51 139.79 6.11 2.67 7.52 19.67 51.83 17.74 39 E4_Ab KnownBoundary 0 0.00 5.13 5.50 1.63 4.33 2.61 9.98 9.78 1.24 1.67 110.45 47.27 92.69 15.07 14.09 74.25 188.59 7.38 4.24 6.26 37.31 82.24 20.32 40 ER4c ExonRegion 0 74.57 92.93 65.58 54.80 169.60 96.91 86.27 167.14 168.21 117.97 1948.89 357.25 938.53 885.52 1103.03 1660.82 2787.22 269.98 99.49 161.19 320.32 690.59 577.57 41 E4_Db KnownBoundary 0 0.00 6.05 1.83 1.43 7.98 2.90 8.52 0.00 1.79 3.84 85.86 5.40 34.09 51.62 19.28 63.57 149.04 5.60 0.00 8.82 14.02 102.14 31.84 42 E4b_E5a KnownJunction 0 10.96 5.79 7.92 1.73 41.09 0.00 7.46 20.09 18.81 16.41 292.97 76.22 230.02 113.49 170.84 272.58 377.19 16.66 13.08 14.38 16.37 129.88 60.35 43 E4b_E6a KnownJunction 0 120.10 93.86 59.19 42.19 106.20 66.95 82.76 135.34 130.47 79.30 1364.13 299.65 595.09 373.54 759.01 921.89 1792.42 161.79 107.39 96.07 212.88 486.44 369.28 44 ER4d ExonRegion 0 1.88 2.68 0.82 1.71 3.62 3.05 8.28 1.54 2.41 2.73 53.71 25.22 88.70 29.91 22.10 42.23 88.18 5.16 2.83 8.55 7.51 58.59 31.48 45 I4 Intron 0 2.05 2.37 2.60 1.58 4.50 2.73 5.82 3.83 3.81 3.31 80.46 17.78 53.03 27.49 33.72 71.47 136.99 18.34 3.91 11.97 59.42 54.69 52.01 46 I4_AR1 ActiveIntronRegion 0 0.86 4.49 2.31 2.00 5.26 2.56 5.93 3.61 4.42 4.35 95.29 30.01 73.70 28.01 27.43 69.18 131.32 18.28 3.91 15.45 48.47 67.72 52.66 47 I4_SR1 SilentIntronRegion 0 0.55 2.81 2.95 1.16 4.58 2.57 5.70 2.36 5.77 2.59 80.34 13.39 44.90 29.35 40.29 79.85 161.62 20.93 1.25 12.96 81.91 48.25 53.30 48 I4_AR2 ActiveIntronRegion 0 3.46 0.93 3.46 1.79 4.67 3.29 5.04 6.13 1.82 4.03 87.44 11.57 42.78 32.36 42.43 83.59 149.72 23.85 9.27 11.40 66.40 58.52 62.14 49 ER5a ExonRegion 0 4.68 9.48 6.16 1.71 31.73 10.51 8.06 20.67 17.10 13.63 342.07 73.97 195.33 111.63 140.89 320.99 512.80 18.14 21.85 8.09 39.51 117.50 85.45 50 E5a_E6a KnownJunction 0 9.26 10.85 12.03 1.96 19.52 19.14 8.66 16.84 14.55 8.62 244.17 118.09 272.71 86.06 90.49 230.03 425.90 13.22 17.88 0.00 19.95 92.59 73.33 51 I5 Intron 0 9.45 2.44 4.88 1.29 8.24 3.11 8.02 10.05 5.42 4.39 110.62 24.39 70.87 36.74 42.56 110.29 171.24 19.75 6.00 11.22 45.63 89.32 68.51 52 I5_SR2 SilentIntronRegion 0 23.56 4.15 9.41 1.24 9.43 6.13 9.19 8.10 8.74 5.65 128.50 33.48 129.33 42.12 46.21 245.77 224.71 33.83 16.18 13.34 50.99 118.48 131.74 53 I5_AR2 ActiveIntronRegion 0 10.21 1.41 5.59 0.00 8.59 4.72 14.61 8.72 5.28 3.54 114.51 32.59 53.65 39.05 25.06 77.70 179.45 21.89 4.48 10.29 71.68 65.64 58.70 54 I5_SR3 SilentIntronRegion 0 3.45 7.08 3.97 0.63 7.48 5.26 6.69 11.91 3.25 5.01 113.22 30.87 43.60 43.49 63.02 149.65 180.33 32.23 8.61 18.75 75.86 105.84 99.68 55 I5_AR3 ActiveIntronRegion 0 6.45 3.72 4.91 2.60 9.07 3.32 5.65 11.99 8.07 4.97 147.62 21.51 74.76 53.88 46.44 161.28 274.39 40.62 4.92 18.05 75.95 125.13 127.44 56 I5_SR4 SilentIntronRegion 0 10.77 2.57 5.56 1.70 7.21 2.31 6.35 9.37 4.95 4.28 114.91 18.06 72.10 38.05 40.40 117.60 203.94 21.98 4.91 10.35 48.91 96.62 78.93 57 I5_AR4 ActiveIntronRegion 0 7.88 1.78 5.07 0.74 10.75 3.08 7.77 8.68 7.02 5.01 132.52 19.82 59.83 46.43 43.49 116.36 191.06 24.98 7.44 12.73 67.73 81.18 65.28 58 E6_Aa NovelBoundary 0 45.34 6.45 14.64 3.36 15.45 5.79 23.19 19.18 4.34 11.79 97.18 17.71 38.96 41.91 84.68 117.66 139.13 15.30 4.71 8.25 23.48 98.77 64.71 59 ER6a ExonRegion 0 84.98 82.02 70.23 50.35 185.09 146.38 129.21 177.36 139.37 125.86 1625.05 336.63 771.23 725.38 870.40 1372.12 2207.21 201.38 108.12 122.13 291.39 613.41 557.73 60 E6_Da KnownBoundary 0 160.32 105.24 72.06 38.46 240.49 161.78 171.35 143.02 87.41 117.44 1209.20 232.13 604.83 806.82 1179.93 1335.21 2177.74 173.61 133.84 145.41 337.24 664.87 540.01 61 ER6b ExonRegion 0 87.78 88.74 74.83 36.00 163.52 124.07 111.34 152.66 141.48 103.13 1219.99 328.14 531.31 603.48 1027.03 1159.95 1928.16 186.90 105.84 141.62 367.53 577.40 498.26 62 E6_Db KnownBoundary 0 265.68 100.71 155.08 67.69 385.65 177.68 185.04 223.44 203.93 141.62 1623.57 439.04 863.90 747.61 1906.80 1743.90 2253.67 262.03 200.57 242.82 315.37 1027.87 792.43 63 ER6c ExonRegion 0 183.33 127.92 106.95 51.00 239.51 120.44 132.14 207.47 163.61 126.50 1130.14 398.91 710.84 412.26 1092.14 857.96 1431.43 87.14 73.41 109.04 140.69 679.29 331.75 64 ER6d ExonRegion 0 6.35 2.03 0.00 0.00 2.68 0.00 1.32 0.00 0.00 0.57 4.83 2.16 9.38 4.87 21.76 5.94 9.90 0.00 0.00 0.00 0.00 2.08 0.00