Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NOM1 Gene 0 35.23 47.42 57.26 49.62 60.98 52.05 56.53 31.00 42.40 42.31 66.17 61.52 56.25 98.13 66.70 70.45 77.56 46.97 51.56 38.73 32.84 36.27 62.75 2 275820 Transcript 0 37.74 44.83 65.73 54.65 69.16 52.77 53.33 34.08 50.31 52.07 110.91 111.21 78.22 163.07 83.98 111.96 133.27 64.74 67.76 49.63 56.12 40.94 90.72 3 460332 Transcript 0 4.37 2.49 2.72 0.83 4.35 1.00 6.24 4.22 3.52 0.69 8.20 9.93 6.93 20.37 7.70 22.79 13.25 5.51 3.02 3.09 7.04 5.99 11.54 4 475176 Transcript 0 4.76 16.87 28.63 18.59 36.95 19.49 32.51 13.89 17.80 11.27 26.07 5.67 17.96 37.40 20.70 19.86 24.27 28.01 32.32 24.79 17.52 11.31 26.44 5 472491 Transcript 0 5.73 12.37 7.39 8.36 6.69 10.07 25.02 5.74 13.95 5.46 20.79 15.94 10.91 27.67 14.85 5.86 21.37 14.46 7.50 23.19 10.76 14.91 20.24 6 489850 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 469271 Transcript 1 9.69 15.61 15.94 23.88 12.06 32.56 34.36 11.04 29.39 15.65 25.55 17.16 23.79 45.16 13.20 26.15 33.03 43.24 33.45 27.88 33.06 19.94 53.21 8 485661 Transcript 0 16.10 5.34 8.45 15.60 17.99 20.38 24.02 10.37 16.42 8.37 23.16 11.36 15.83 24.01 11.42 14.17 25.73 27.29 18.54 11.36 21.31 14.60 44.84 9 486131 Transcript 0 5.80 15.82 5.35 10.76 8.36 6.04 16.71 5.43 5.47 6.78 5.00 2.96 8.13 9.42 6.41 8.97 9.76 3.95 2.64 9.80 0.77 8.28 7.63 10 ER1a ExonRegion 0 19.23 16.40 53.89 27.50 32.57 28.37 33.50 22.05 28.66 30.01 66.06 34.16 59.59 120.39 56.37 59.82 96.33 43.55 51.90 33.02 49.65 21.03 60.03 11 E1a_E2a KnownJunction 0 23.19 38.87 106.26 98.39 96.10 48.49 81.17 44.57 60.36 64.71 153.09 105.18 153.07 212.67 99.51 99.63 173.45 92.57 105.13 55.16 66.10 70.79 87.07 12 ER2a ExonRegion 0 34.51 38.48 94.15 71.18 110.82 57.90 64.24 38.01 53.80 63.33 136.45 135.67 112.60 178.73 98.02 156.79 165.34 93.64 100.10 77.09 67.12 60.66 115.35 13 E2a_E3a KnownJunction 0 47.79 47.03 63.27 61.56 94.23 63.71 61.43 40.99 60.04 62.72 125.61 194.46 86.03 199.01 113.36 177.13 194.02 80.92 80.66 64.56 87.97 49.54 141.70 14 E3_Ab NovelBoundary 0 20.45 13.62 40.12 28.04 24.36 21.86 35.95 27.89 40.13 36.80 66.86 63.02 18.99 84.70 30.04 73.06 82.37 48.58 54.21 32.09 49.24 18.98 45.58 15 ER3a ExonRegion 0 34.29 38.64 56.49 55.74 66.89 50.43 48.59 34.91 61.51 55.97 145.16 167.98 79.73 190.18 85.01 162.28 170.66 85.55 101.93 64.68 86.83 49.59 125.10 16 ER3b ExonRegion 0 25.51 41.85 51.94 41.69 45.73 43.53 46.22 38.98 55.28 58.63 121.22 125.39 71.21 156.94 92.17 114.73 140.13 79.06 70.30 64.01 67.28 41.00 102.94 17 E3a_E4a KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 7.51 5.01 3.04 0.00 4.79 11.85 6.82 31.67 4.45 21.53 14.68 6.51 4.05 0.00 4.76 2.69 11.01 18 E3a_E5a KnownJunction 0 51.49 68.94 38.97 32.36 57.56 72.06 46.06 28.59 55.18 67.05 125.82 132.94 74.18 170.17 105.20 143.72 152.88 61.81 51.01 54.65 55.04 27.49 92.70 19 I3_SR3 SilentIntronRegion 0 3.74 3.08 17.48 4.51 4.72 1.44 4.88 5.20 4.72 5.34 3.71 6.24 6.35 2.86 4.43 10.11 8.97 6.13 13.45 4.28 2.40 1.71 6.68 20 E4_Aa NovelBoundary 0 0.00 0.00 22.94 5.23 11.71 0.00 12.23 6.94 9.84 2.93 0.00 6.15 6.82 0.00 5.56 6.49 3.83 10.36 4.24 2.88 0.00 5.69 4.35 21 ER4a ExonRegion 0 5.55 4.38 8.16 2.49 8.90 3.00 7.52 3.73 6.01 2.08 12.50 10.44 7.16 17.09 9.76 30.50 20.86 8.44 5.03 3.76 7.58 9.21 11.91 22 E4a_E5a KnownJunction 0 3.78 3.09 0.00 0.00 4.16 0.00 3.71 3.90 1.50 0.00 7.32 7.50 6.82 12.36 8.90 16.32 4.21 1.58 0.00 5.50 8.77 6.06 11.69 23 ER5a ExonRegion 0 29.96 58.65 48.34 36.79 65.02 46.03 51.05 31.75 39.49 51.05 109.71 113.63 62.58 141.00 96.16 90.22 120.10 58.34 51.90 53.89 43.05 44.47 98.82 24 E5_Ab KnownBoundary 0 70.16 76.04 108.33 76.38 136.16 83.30 96.58 31.30 49.71 68.74 104.87 144.20 59.09 149.69 105.69 115.27 124.64 66.62 47.25 71.20 51.65 25.72 140.59 25 ER5b ExonRegion 0 30.39 39.34 105.67 69.84 98.87 66.12 75.96 44.93 44.40 55.07 129.20 119.84 74.93 182.54 97.07 117.76 136.85 77.82 76.34 54.74 59.12 58.82 129.38 26 E5_Da KnownBoundary 0 40.97 46.64 121.88 65.99 77.93 54.80 63.46 30.27 49.54 58.26 90.71 153.05 117.85 204.78 96.67 129.54 117.16 87.96 79.81 30.55 47.88 60.56 79.05 27 ER5c ExonRegion 0 28.12 56.25 85.82 59.63 60.87 41.52 44.09 27.44 51.12 48.07 102.62 94.09 69.43 164.99 101.85 90.33 121.01 81.14 54.89 38.79 51.98 36.05 89.52 28 E5_Db KnownBoundary 1 5.78 5.92 33.62 17.01 23.85 7.55 26.90 14.09 21.18 15.42 12.42 6.30 40.58 28.08 38.07 15.89 25.62 23.30 20.52 15.60 10.63 14.14 31.33 29 E5b_E6a KnownJunction 0 16.89 53.81 44.85 46.08 56.62 28.05 18.68 12.49 40.45 24.12 89.02 55.37 13.64 159.34 53.77 55.88 96.40 54.97 26.26 20.71 52.20 25.29 52.50 30 ER5d ExonRegion 0 9.51 11.12 27.61 14.16 21.27 13.42 28.49 13.28 20.76 11.61 24.44 11.34 16.44 30.12 18.66 20.58 22.65 27.46 23.51 22.92 20.39 10.31 21.04 31 E5c_E6a KnownJunction 0 0.00 22.63 29.66 23.01 52.63 25.55 36.52 14.50 14.84 10.93 27.69 0.00 19.48 44.68 22.75 19.14 25.90 28.56 41.13 26.65 14.64 12.31 31.84 32 E6_Ac NovelBoundary 0 18.37 48.61 47.49 21.71 40.41 28.11 36.79 10.31 34.49 24.15 45.17 31.36 27.60 45.32 26.45 67.25 51.05 46.43 35.01 26.65 10.44 12.00 29.19 33 ER6a ExonRegion 0 25.87 79.08 71.82 53.23 87.26 67.04 57.52 26.41 50.23 36.06 108.78 81.78 64.36 183.16 79.14 95.27 129.65 77.19 67.25 53.19 63.54 38.20 96.26 34 ER6b ExonRegion 0 30.34 82.70 78.02 53.15 87.41 65.41 67.08 25.35 50.64 35.94 99.87 124.11 67.22 168.37 92.84 99.07 144.14 80.07 64.77 55.32 58.77 38.89 91.04 35 ER6c ExonRegion 0 36.45 63.49 65.19 28.12 59.04 48.88 67.21 25.52 47.02 35.52 97.50 80.62 49.30 156.26 83.49 109.80 129.36 82.88 48.84 38.01 59.23 31.65 82.49 36 E6_Da NovelBoundary 0 6.59 0.00 3.43 0.00 4.24 2.84 6.27 4.39 6.08 1.32 4.79 6.15 0.00 7.06 0.00 3.50 16.83 31.79 17.88 11.82 0.00 2.57 3.41 37 E6a_E7a KnownJunction 0 23.41 47.10 41.01 18.35 43.97 48.44 35.42 23.99 41.96 39.70 112.77 52.82 25.97 157.75 82.33 97.24 117.53 79.67 38.78 35.86 46.95 31.72 81.27 38 E7_Aa NovelBoundary 0 0.00 6.38 5.53 3.40 10.70 23.79 20.84 7.76 5.32 4.03 7.95 0.00 0.00 14.66 14.09 10.08 4.77 21.35 8.28 11.82 8.59 2.94 7.00 39 ER7a ExonRegion 0 17.98 25.50 41.05 25.99 31.41 33.75 38.52 21.21 32.43 41.75 81.65 21.31 52.43 151.44 73.39 84.92 110.17 67.93 46.43 40.17 60.22 32.15 58.17 40 E7_Da KnownBoundary 0 7.56 6.71 21.26 12.29 11.88 0.00 9.63 8.54 15.42 23.99 19.00 0.00 0.00 21.66 22.50 43.32 16.64 29.22 32.66 15.60 22.43 29.33 24.76 41 E7a_E7b KnownJunction 0 12.82 12.17 32.41 15.25 14.26 38.05 51.85 23.91 27.20 34.28 43.70 11.40 59.25 104.60 68.61 61.35 66.29 30.97 38.97 22.75 14.39 20.82 65.30 42 ER7b ExonRegion 0 12.32 6.96 11.10 12.71 13.68 28.28 22.52 7.76 21.46 22.95 18.73 7.88 6.97 36.60 14.11 24.20 30.17 37.88 28.33 14.42 18.23 24.07 33.38 43 E7_Db KnownBoundary 0 9.78 9.01 14.87 21.68 12.39 41.68 40.50 12.82 25.95 27.29 29.11 30.61 0.00 33.96 20.40 46.40 43.01 30.80 54.78 9.08 14.64 50.64 69.49 44 ER7c ExonRegion 0 12.61 12.30 10.54 12.96 8.57 24.99 22.50 7.53 32.19 16.21 20.05 7.22 8.92 37.17 13.56 25.61 28.18 42.75 29.24 17.21 16.88 26.83 40.23 45 E7_Dc KnownBoundary 0 13.85 8.75 13.45 12.52 8.32 7.55 19.08 6.61 36.81 23.07 10.06 12.15 12.66 26.72 5.32 27.34 22.25 26.45 12.89 8.56 16.37 26.64 50.11 46 ER7d ExonRegion 0 9.69 15.61 15.94 23.88 12.06 32.56 34.36 11.04 29.39 15.65 25.55 17.16 23.79 45.16 13.20 26.15 33.03 43.24 33.45 27.88 33.06 19.94 53.21 47 E7_Ab KnownBoundary 1 5.85 33.02 18.63 18.75 32.34 46.62 27.16 25.67 26.16 12.14 24.90 24.01 39.77 65.40 17.80 21.45 48.81 39.34 34.64 18.22 31.26 16.47 51.13 48 ER7e ExonRegion 0 44.87 47.04 61.27 42.52 77.07 93.02 83.35 36.30 52.10 52.18 115.57 77.61 124.54 179.91 78.53 96.63 110.65 68.60 73.90 64.44 55.51 45.23 115.16 49 E7_Dd KnownBoundary 0 19.41 23.29 15.11 30.00 30.31 29.30 27.38 9.28 26.91 15.45 40.75 20.56 58.76 46.97 24.60 30.76 26.27 39.09 26.26 36.62 28.85 24.06 28.94 50 E7d_E8b KnownJunction 0 56.90 20.85 50.91 21.18 19.52 58.03 51.49 40.01 36.08 41.69 87.71 93.93 60.22 139.80 55.50 73.48 74.24 18.36 30.31 29.15 11.80 15.25 75.38 51 ER7f ExonRegion 0 17.25 28.47 19.20 23.32 24.73 17.93 34.30 15.42 26.77 14.02 39.81 26.33 36.00 39.06 14.92 23.69 25.01 35.54 27.16 28.99 18.32 26.94 32.48 52 E7_De KnownBoundary 1 13.78 29.40 22.18 22.81 12.56 11.02 36.52 17.66 25.61 6.02 26.95 62.27 68.99 46.38 34.74 15.81 24.68 16.33 12.14 33.36 9.02 16.90 36.02 53 ER7g ExonRegion 0 5.73 12.37 7.39 8.36 6.69 10.07 25.02 5.74 13.95 5.46 20.79 15.94 10.91 27.67 14.85 5.86 21.37 14.46 7.50 23.19 10.76 14.91 20.24 54 E7_Df NovelBoundary 1 2.74 21.44 4.91 26.00 36.16 20.90 50.74 11.79 22.40 5.91 28.43 6.30 67.20 24.25 16.44 12.13 28.33 21.35 13.08 25.89 11.12 26.58 35.77 55 I7 Intron 0 9.44 15.14 8.14 18.81 17.57 17.16 23.87 10.73 14.25 10.05 17.05 26.42 19.71 23.86 16.35 21.84 18.92 19.05 20.44 15.84 11.44 18.58 31.22 56 I7_AR1 ActiveIntronRegion 0 10.60 19.69 10.11 23.54 21.34 16.93 28.91 12.81 17.33 12.36 16.74 36.08 24.74 25.72 19.45 23.44 21.47 17.64 24.54 18.84 10.40 23.60 33.75 57 I7_SR1 SilentIntronRegion 1 3.91 7.03 3.66 7.39 9.85 16.05 10.89 5.07 5.98 6.34 21.08 15.66 8.58 16.99 7.36 11.83 9.45 13.85 14.57 10.28 7.96 6.56 15.64 58 I7_AR3 ActiveIntronRegion 0 12.45 10.69 7.35 17.45 15.77 20.66 22.92 11.02 14.35 7.77 16.99 10.64 17.53 27.27 16.61 29.10 21.75 31.13 16.41 13.91 19.45 16.50 39.41 59 I7_AR4 ActiveIntronRegion 0 2.86 3.74 2.32 5.30 3.62 9.66 11.31 3.60 4.64 2.32 3.13 1.40 4.06 11.24 9.25 9.80 10.44 8.09 3.27 4.54 6.08 6.64 26.99 60 E8_Aa NovelBoundary 0 3.70 15.59 19.34 29.10 14.43 20.44 25.00 13.64 16.67 13.97 9.21 19.21 6.33 32.43 10.51 40.93 16.83 47.13 31.44 23.07 26.44 9.00 40.21 61 ER8a ExonRegion 0 16.10 5.34 8.45 15.60 17.99 20.38 24.02 10.37 16.42 8.37 23.16 11.36 15.83 24.01 11.42 14.17 25.73 27.29 18.54 11.36 21.31 14.60 44.84 62 E8_Ab KnownBoundary 1 31.34 21.51 24.78 21.54 42.19 21.81 56.53 34.95 26.79 14.05 12.00 23.71 39.45 18.42 8.90 22.99 25.25 43.90 41.22 17.19 27.00 44.88 76.14 63 ER8b ExonRegion 0 46.84 36.64 72.22 61.25 67.42 70.84 78.17 54.45 66.60 58.25 142.60 103.25 98.31 144.83 83.28 103.21 140.86 61.86 68.56 45.60 46.34 42.78 99.93 64 E8_Da NovelBoundary 0 13.34 17.56 10.76 13.12 12.56 26.52 35.82 7.19 10.76 4.30 10.42 0.00 0.00 19.25 16.44 35.03 30.57 14.51 9.60 14.70 8.59 20.27 33.55 65 E8a_E9a KnownJunction 0 68.83 53.54 82.32 55.04 88.62 68.82 128.12 50.60 62.73 35.51 116.50 95.43 145.45 147.74 95.80 76.13 123.33 45.52 62.87 44.17 26.13 49.66 95.86 66 I8 Intron 0 6.58 8.92 9.84 10.95 15.16 11.56 12.34 3.53 4.88 5.31 8.13 2.89 4.03 14.26 9.72 13.58 12.07 8.57 9.32 12.25 6.04 8.76 18.25 67 I8_AR1 ActiveIntronRegion 0 6.95 10.61 10.73 11.18 16.17 13.31 14.52 4.05 5.28 5.99 8.69 3.04 3.95 15.91 11.47 15.62 13.84 9.94 9.03 14.56 7.27 10.00 19.88 68 E9_Aa NovelBoundary 0 3.04 13.42 7.98 18.51 30.90 27.26 40.85 6.61 8.36 1.64 2.53 5.70 6.82 19.13 5.19 8.46 3.65 2.11 12.80 23.65 0.00 8.76 23.05 69 ER9a ExonRegion 0 36.72 47.74 69.93 55.08 111.63 96.11 83.45 48.71 58.06 47.47 107.86 156.42 162.23 162.79 102.93 124.99 117.01 41.55 62.40 39.23 29.67 53.86 90.06 70 E9_Da NovelBoundary 0 5.93 5.53 29.30 6.46 15.62 5.11 15.59 11.83 7.18 7.55 10.58 24.91 0.00 9.12 8.90 0.00 12.25 9.62 0.00 22.12 0.00 11.08 8.71 71 E9a_E10b KnownJunction 1 27.93 30.59 58.34 60.13 91.26 45.49 73.31 50.11 50.43 49.72 64.60 91.53 140.58 220.85 131.78 180.47 85.83 33.04 53.27 37.26 33.67 46.29 59.24 72 I9 Intron 0 4.53 7.54 10.12 8.84 6.95 6.66 8.85 4.82 5.13 3.72 9.30 4.62 5.05 11.62 8.12 13.40 10.34 9.23 9.25 10.24 5.81 10.67 14.14 73 I9_SR1 SilentIntronRegion 0 4.54 7.55 10.14 8.86 6.97 6.67 8.87 4.83 5.14 3.73 9.32 4.63 5.06 11.64 8.14 13.43 10.36 9.25 9.27 10.26 5.82 10.69 14.17 74 ER10a ExonRegion 0 5.80 15.82 5.35 10.76 8.36 6.04 16.71 5.43 5.47 6.78 5.00 2.96 8.13 9.42 6.41 8.97 9.76 3.95 2.64 9.80 0.77 8.28 7.63 75 E10_Ab KnownBoundary 0 31.71 11.31 10.97 16.55 8.66 0.00 17.58 4.31 8.77 11.93 9.63 5.70 6.82 17.01 13.35 16.49 4.02 2.57 13.27 15.15 0.00 11.14 4.35 76 ER10b ExonRegion 0 49.40 43.94 68.62 54.52 97.46 88.64 90.56 45.35 52.94 59.78 91.77 100.29 94.45 155.20 92.55 124.94 120.62 21.21 57.34 47.65 31.38 45.65 99.79 77 E10_Da NovelBoundary 0 21.63 21.58 20.79 14.78 15.11 0.00 26.45 0.00 6.92 8.81 7.74 6.30 12.99 0.00 9.02 0.00 20.94 4.02 3.48 0.00 0.00 5.69 7.09 78 E10a_E11a KnownJunction 0 76.75 50.25 42.75 48.88 91.26 113.68 103.21 31.05 42.04 35.81 92.92 90.93 99.02 96.12 101.12 93.39 67.98 37.31 45.65 21.22 11.24 40.97 82.03 79 ER11a ExonRegion 0 35.24 35.01 37.95 43.93 80.12 86.69 78.35 21.86 42.20 41.49 75.04 49.93 49.64 115.01 70.51 93.67 85.83 44.03 54.89 30.61 25.50 33.27 56.98 80 E11_Da KnownBoundary 0 103.65 76.76 78.38 70.62 96.86 103.35 215.12 58.98 76.62 76.07 52.17 36.01 62.82 95.77 136.23 176.36 151.00 111.97 137.98 101.95 79.38 39.74 133.17 81 ER11b ExonRegion 0 55.40 80.41 82.73 77.82 88.17 67.88 74.79 45.07 56.72 59.05 69.30 81.20 64.95 97.37 89.05 78.88 76.13 51.26 62.56 47.69 28.41 48.82 66.60 82 IG38 Intergenic 0 0.79 0.35 6.85 4.12 1.16 0.13 0.76 0.51 0.69 1.02 0.22 0.27 10.33 6.11 7.98 0.52 15.28 6.02 0.87 7.30 0.18 0.09 0.49 83 IG38_SR3 SilentIntergenicRegion 0 0.79 0.35 6.88 4.14 1.17 0.13 0.76 0.51 0.69 1.02 0.22 0.27 10.37 6.13 8.01 0.52 15.34 6.04 0.87 7.33 0.18 0.09 0.49