Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ACTR3B Gene 0 13.29 33.34 45.62 26.89 25.95 37.10 26.05 29.09 41.40 25.30 14.19 10.08 13.90 18.63 21.33 15.05 16.80 24.49 37.17 31.17 9.97 9.31 11.47 2 377776 Transcript 0 3.78 0.00 5.91 1.43 7.47 2.90 8.57 6.00 7.09 5.67 0.00 0.00 0.00 2.47 10.26 4.36 14.21 4.31 11.48 0.00 3.15 5.57 0.00 3 256001 Transcript 0 1.21 6.39 3.68 2.92 5.73 2.36 6.43 11.11 8.12 4.59 0.83 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.60 0.00 4 397282 Transcript 0 0.00 0.00 2.66 6.66 8.15 9.88 0.00 5.30 8.33 9.24 2.68 0.00 0.00 0.00 0.00 0.00 11.78 4.48 7.44 2.56 5.68 0.00 0.00 5 488782 Transcript 0 3.22 0.00 2.32 1.00 4.16 0.00 2.12 0.00 3.46 0.00 4.76 9.30 0.00 13.10 2.23 7.26 0.00 0.00 0.00 2.49 10.22 13.66 3.50 6 468919 Transcript 0 0.00 0.00 0.00 0.35 0.98 0.00 0.24 0.47 0.68 0.31 0.00 0.00 0.71 1.05 0.00 0.00 1.21 0.00 0.00 2.34 0.81 0.00 0.54 7 479402 Transcript 0 5.13 5.72 4.07 5.70 4.97 3.94 5.84 5.68 5.29 3.44 3.12 3.73 6.57 2.19 5.27 4.87 3.85 4.27 4.08 5.66 3.01 2.43 4.16 8 ER1a ExonRegion 0 0.21 3.25 0.61 0.00 0.74 4.91 2.48 0.04 0.62 0.80 1.35 0.00 0.00 0.00 0.00 2.08 0.17 0.00 0.00 0.00 3.03 0.00 1.17 9 E1_Ab KnownBoundary 0 0.00 6.45 0.00 0.00 6.88 20.95 8.08 3.29 1.45 1.48 4.69 0.00 0.00 2.59 0.00 7.69 4.30 2.11 3.95 0.00 7.72 0.00 3.93 10 ER1b ExonRegion 0 12.36 43.88 16.31 7.99 27.98 95.77 28.23 8.42 20.22 18.40 15.67 1.76 3.53 11.22 11.67 4.70 22.15 5.93 32.20 26.13 10.68 3.08 11.70 11 E1a_E2a KnownJunction 0 0.00 8.62 8.81 3.06 0.00 7.55 1.72 3.86 10.91 5.48 16.53 12.60 6.82 11.89 5.69 3.42 21.04 7.79 12.61 8.37 5.44 0.00 0.00 12 E1a_E3a KnownJunction 0 0.00 0.00 2.66 6.66 8.15 9.88 0.00 5.30 8.33 9.24 2.68 0.00 0.00 0.00 0.00 0.00 11.78 4.48 7.44 2.56 5.68 0.00 0.00 13 I1_AR1 ActiveIntronRegion 0 5.37 13.04 11.44 15.45 20.35 9.02 12.83 6.53 6.87 2.55 2.02 1.71 0.00 2.54 4.96 5.76 2.95 2.87 19.48 6.98 1.97 0.62 1.75 14 E2_Aa NovelBoundary 0 3.41 2.63 16.06 11.22 0.00 8.35 11.66 20.33 32.58 4.24 0.00 6.15 30.03 0.00 0.00 7.86 0.00 1.95 18.35 8.56 0.00 0.00 3.93 15 ER2a ExonRegion 1 3.93 10.46 11.42 5.50 3.15 22.69 6.31 7.32 10.72 18.76 16.46 2.16 1.34 4.38 2.07 4.56 29.35 9.50 11.72 15.24 6.18 0.00 0.00 16 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E3_Aa NovelBoundary 0 3.78 2.96 1.83 4.66 0.00 10.73 10.25 8.34 18.03 2.77 0.00 0.00 0.00 0.00 0.00 4.10 4.21 0.00 4.24 2.68 2.90 0.00 0.00 18 ER3a ExonRegion 0 14.61 39.05 76.62 47.48 17.03 27.45 21.04 43.14 89.15 72.92 42.15 10.52 14.12 50.31 36.09 30.68 31.84 52.13 127.00 100.89 18.32 12.12 10.74 19 E3_Ab KnownBoundary 0 16.60 97.22 122.50 64.93 20.63 38.61 32.64 95.62 158.71 114.27 41.96 13.95 13.15 44.56 38.20 26.57 8.23 41.04 92.33 84.95 12.36 24.68 34.15 20 ER3b ExonRegion 0 15.74 84.46 96.73 49.06 32.69 69.05 30.74 59.31 109.69 81.82 41.44 9.88 15.98 45.98 25.66 20.80 7.01 27.08 92.38 75.27 10.33 16.08 27.16 21 E3_Da NovelBoundary 0 3.78 8.88 5.26 5.93 0.00 2.90 6.76 12.61 51.53 11.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 0.00 0.00 3.67 22 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER4a ExonRegion 0 19.96 99.76 140.26 91.14 58.65 160.00 66.95 66.85 140.76 92.99 56.33 34.48 27.84 63.40 42.68 35.88 40.50 43.08 108.39 99.10 19.08 14.81 21.67 24 E4_Da NovelBoundary 0 6.74 9.21 11.15 9.72 12.39 27.88 19.21 11.54 51.10 15.02 5.11 0.00 0.00 4.94 5.93 0.00 0.00 4.35 4.52 15.85 2.84 3.06 0.00 25 E4a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 4.24 0.00 1.99 0.00 5.32 0.00 5.05 6.30 0.00 12.13 0.00 7.78 0.00 0.00 0.00 2.49 11.55 16.59 3.41 26 E4a_E6c KnownJunction 0 31.41 165.63 240.29 145.14 90.75 247.53 136.77 112.79 196.87 112.74 70.75 43.96 28.73 102.83 71.20 36.57 33.85 45.06 206.50 153.91 5.44 14.82 24.33 27 I4 Intron 0 2.93 3.13 4.86 3.79 12.71 8.63 6.55 9.74 18.13 5.56 0.98 3.55 5.42 1.93 2.04 1.63 1.67 1.47 2.73 5.38 1.79 0.92 1.68 28 I4_SR1 SilentIntronRegion 0 2.93 3.13 4.86 3.80 12.71 8.63 6.55 9.74 18.13 5.56 0.98 3.55 5.42 1.93 2.04 1.63 1.67 1.47 2.73 5.38 1.79 0.92 1.68 29 ER5a ExonRegion 0 0.00 0.00 0.00 0.71 1.96 0.00 0.49 0.95 1.35 0.63 0.00 0.00 1.42 2.10 0.00 0.00 2.42 0.00 0.00 4.68 1.62 0.00 1.08 30 E5a_E6c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 E6_Aa NovelBoundary 0 21.26 67.42 9.82 16.05 29.97 37.59 80.33 11.13 20.75 18.37 17.64 37.96 25.65 20.19 13.47 21.02 36.84 25.12 41.13 37.20 17.48 5.51 24.24 32 ER6a ExonRegion 0 4.47 6.79 4.80 8.04 6.23 0.88 6.26 4.85 5.93 3.03 3.34 3.92 8.28 2.19 6.28 4.24 2.19 1.49 5.26 4.58 2.05 2.75 3.74 33 E6_Ab KnownBoundary 0 3.78 2.96 1.74 9.66 4.33 0.00 12.01 10.72 1.62 0.00 2.63 0.00 6.82 2.47 0.00 4.02 4.77 2.07 0.00 2.88 2.97 3.12 4.18 34 ER6b ExonRegion 0 17.34 30.73 12.08 17.68 15.16 0.46 10.92 9.55 16.06 1.31 6.71 6.37 6.12 16.24 7.74 8.34 2.57 0.92 2.12 7.92 14.39 18.40 13.62 35 E6_Da KnownBoundary 0 38.08 74.07 12.95 20.11 25.81 2.27 9.36 4.72 18.43 1.50 2.68 0.00 6.82 0.00 4.45 7.60 0.00 0.00 4.80 6.33 6.24 0.00 22.37 36 E6a_E6c KnownJunction 0 6.45 0.00 4.64 2.00 4.07 0.00 2.25 0.00 1.59 0.00 4.47 12.30 0.00 14.07 4.45 6.75 0.00 0.00 0.00 2.49 8.90 10.72 3.59 37 ER6c ExonRegion 0 7.14 10.37 7.41 9.06 8.69 5.30 11.24 10.38 9.95 7.29 3.86 7.26 11.42 4.39 9.54 10.36 9.37 11.31 6.98 12.41 6.99 4.54 8.73 38 E6_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER6d ExonRegion 0 37.23 105.98 176.00 106.08 97.79 158.34 102.70 90.37 170.25 98.66 80.57 54.92 47.25 78.01 59.34 39.45 65.88 80.48 180.02 116.48 31.52 27.94 24.05 40 E6b_E7a KnownJunction 0 29.19 55.52 145.71 102.22 48.64 63.66 46.28 45.47 142.59 67.26 62.02 24.16 6.01 29.67 32.14 39.22 45.72 79.34 89.51 42.12 28.97 22.72 23.65 41 E6b_E7b KnownJunction 0 3.78 0.00 0.00 0.00 0.00 5.62 0.00 1.81 0.00 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 E6b_E8a NovelJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 19.20 2.88 0.00 0.00 0.00 43 ER7a ExonRegion 0 25.82 75.24 174.49 103.85 38.00 100.86 66.73 68.45 162.79 86.02 76.16 37.23 15.01 51.32 38.30 38.04 54.79 106.06 115.95 69.79 25.56 20.84 17.62 44 ER7b ExonRegion 0 28.26 90.36 164.96 95.18 49.25 95.16 62.01 64.42 164.10 84.03 57.62 48.79 31.31 62.81 34.89 57.35 44.96 125.90 125.78 81.89 12.21 19.31 22.54 45 E7_Da KnownBoundary 0 62.90 140.24 168.42 88.23 110.87 103.52 75.78 78.20 158.45 95.95 81.60 114.64 101.45 139.56 111.13 113.30 97.43 135.76 192.10 109.43 12.17 28.84 45.58 46 ER7c ExonRegion 0 26.36 107.56 141.42 83.59 55.62 104.94 49.73 74.32 130.66 78.20 54.15 43.10 55.07 70.40 58.11 49.18 56.12 109.05 183.30 88.62 25.58 23.04 24.92 47 E7b_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 ER8a ExonRegion 0 22.08 113.00 94.69 52.50 48.22 102.30 86.43 48.34 95.82 51.50 26.09 20.32 14.49 37.67 31.99 29.27 35.99 61.01 116.16 48.68 13.47 20.53 17.05 49 E8_Da NovelBoundary 0 0.00 0.00 7.63 11.45 4.33 2.27 8.79 4.23 8.56 1.02 0.00 0.00 8.28 0.00 0.00 0.00 4.02 0.00 13.65 6.52 0.00 0.00 0.00 50 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 I8_AR1 ActiveIntronRegion 0 2.69 5.92 13.05 13.16 2.31 4.82 5.04 3.96 7.28 6.44 2.88 1.06 1.87 2.12 4.98 3.12 1.79 6.29 11.21 9.09 1.93 1.01 3.63 52 ER9a ExonRegion 0 31.69 97.71 135.17 65.84 47.56 121.46 75.97 79.46 111.77 56.20 43.33 25.73 27.12 56.80 38.28 36.72 46.76 70.58 132.96 61.09 17.78 21.43 24.10 53 E9a_E10a KnownJunction 0 25.49 84.72 153.69 49.38 66.04 105.56 76.36 85.31 94.01 45.77 44.12 31.51 27.27 49.44 38.07 24.27 21.88 49.08 119.72 43.72 21.81 26.58 29.62 54 E10_Aa NovelBoundary 0 10.08 7.89 10.35 7.72 0.00 0.00 5.79 1.68 7.15 0.00 0.00 0.00 0.00 0.00 4.45 3.67 0.00 0.00 0.00 3.00 8.09 0.00 0.00 55 ER10a ExonRegion 0 41.06 77.63 162.91 77.92 52.59 117.34 66.68 89.60 116.65 69.50 53.48 19.60 29.05 83.48 50.76 44.42 68.96 66.82 162.59 83.41 29.26 21.51 25.26 56 E10_Da NovelBoundary 0 0.00 2.76 8.46 10.32 0.00 0.00 12.23 0.00 3.41 7.79 0.00 24.31 20.29 5.36 0.00 6.92 0.00 23.88 8.56 14.89 0.00 3.12 12.38 57 E10a_E11a KnownJunction 0 65.94 86.70 152.86 63.13 42.53 91.94 72.03 86.21 100.35 62.13 44.17 28.96 27.11 60.33 56.86 49.65 45.35 86.80 102.78 84.31 21.81 10.59 26.38 58 E10a_E13a KnownJunction 0 3.78 0.00 5.91 1.43 7.47 2.90 8.57 6.00 7.09 5.67 0.00 0.00 0.00 2.47 10.26 4.36 14.21 4.31 11.48 0.00 3.15 5.57 0.00 59 I10_AR2 ActiveIntronRegion 0 2.14 6.62 9.79 3.88 4.92 2.47 8.58 5.33 5.71 7.14 1.74 1.54 4.17 3.50 2.22 3.79 6.19 18.70 6.79 11.81 6.83 2.11 4.36 60 E11_Aa NovelBoundary 0 0.00 9.01 20.79 0.00 4.16 17.72 1.72 2.55 7.55 11.52 0.00 6.30 0.00 4.94 4.45 8.12 4.77 35.94 19.20 17.13 9.33 8.02 0.00 61 ER11a ExonRegion 0 33.11 73.64 135.76 40.08 44.49 98.05 52.45 51.11 79.52 53.76 30.94 14.60 23.49 57.54 66.11 29.63 45.35 87.80 108.10 83.47 29.12 19.46 40.32 62 E11a_E12a KnownJunction 1 19.41 67.09 133.64 40.35 45.67 72.91 34.23 36.84 65.31 45.05 41.48 6.30 25.65 45.09 35.48 11.19 53.02 33.87 94.21 71.52 38.24 5.08 3.50 63 E12_Aa NovelBoundary 0 0.00 6.12 16.32 3.16 0.00 0.00 8.39 9.28 8.65 4.19 2.37 0.00 0.00 4.89 0.00 0.00 3.65 13.31 14.31 8.37 0.00 0.00 4.35 64 ER12a ExonRegion 0 24.94 63.65 125.19 48.45 53.13 94.96 39.39 55.87 86.83 56.70 41.60 11.08 20.32 57.00 76.19 24.10 51.99 75.10 105.42 104.53 32.08 11.06 18.77 65 E12_Da NovelBoundary 0 10.67 2.63 12.71 0.00 0.00 2.90 2.21 1.68 9.35 1.67 5.26 0.00 0.00 2.41 6.30 4.36 3.65 6.96 4.42 8.82 5.50 11.08 3.33 66 E12a_E13a KnownJunction 0 37.27 110.44 162.62 53.11 128.10 149.80 59.62 68.43 76.30 72.12 38.38 12.75 27.11 42.62 86.90 39.82 38.62 103.30 88.38 58.87 30.33 25.53 20.57 67 I12 Intron 0 11.87 28.59 22.26 6.87 16.91 12.73 15.44 11.00 9.83 4.11 3.10 2.36 10.39 5.00 6.24 5.29 1.47 6.14 7.65 10.79 5.88 5.56 4.18 68 I12_AR1 ActiveIntronRegion 0 3.34 11.01 15.70 1.16 5.88 5.57 4.87 5.51 6.26 2.13 3.37 0.00 9.10 5.99 9.24 10.43 1.20 7.63 6.09 11.89 5.10 4.58 7.14 69 I12_SR1 SilentIntronRegion 0 13.89 32.80 23.99 8.21 19.54 14.46 17.95 12.35 10.73 4.60 3.08 2.90 10.80 4.85 5.65 4.23 1.55 5.89 8.10 10.61 6.13 5.85 3.58 70 E13_Aa NovelBoundary 0 3.78 9.67 14.67 8.82 18.85 5.11 15.41 7.93 7.47 4.00 0.00 12.60 6.82 2.12 0.00 3.85 0.00 13.64 0.00 12.08 5.99 2.45 8.71 71 ER13a ExonRegion 0 34.07 81.25 114.57 56.03 74.36 110.39 56.94 65.22 104.78 59.49 30.42 11.06 21.31 56.09 68.27 32.76 36.07 76.79 96.64 78.44 24.51 18.89 27.05 72 E13_Da KnownBoundary 0 24.30 89.98 61.88 46.65 42.36 53.72 56.79 37.46 70.63 36.61 12.74 6.30 14.45 33.32 22.13 8.46 12.06 13.85 63.25 33.62 8.83 17.15 11.18 73 E13_Db KnownBoundary 0 9.85 49.79 73.12 48.18 60.10 56.67 67.57 73.73 75.98 48.84 9.37 13.35 0.00 15.48 18.54 0.00 20.10 2.11 31.62 38.03 11.55 11.21 11.78 74 ER13b ExonRegion 0 20.20 94.84 118.19 71.74 61.06 83.52 80.64 107.95 128.12 75.28 15.64 14.56 7.67 37.80 23.47 11.35 23.41 17.81 67.76 53.38 18.43 20.65 22.69 75 ER13c ExonRegion 0 21.50 67.09 135.44 74.62 80.22 67.61 52.03 97.04 106.34 62.31 14.88 11.16 13.76 17.35 30.46 11.97 6.87 9.38 31.42 50.35 3.73 26.56 5.22 76 ER13d ExonRegion 0 1.21 6.39 3.68 2.92 5.73 2.36 6.43 11.11 8.12 4.59 0.83 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.60 0.00