Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RHEB Gene 0 125.74 143.05 253.61 144.14 198.11 227.92 220.08 171.53 229.42 134.45 109.20 80.78 45.04 67.11 69.93 65.26 52.38 125.16 177.38 110.81 53.21 206.80 75.07 2 496004 Transcript 0 5.11 10.14 5.48 1.30 10.03 3.90 14.97 2.22 14.73 0.00 6.45 0.00 0.00 1.27 2.23 0.00 1.78 2.63 9.67 8.47 3.41 5.83 4.56 3 262187 Transcript 1 63.45 64.96 166.39 67.77 75.05 102.00 95.46 109.79 150.79 113.31 121.66 13.45 12.45 31.35 37.92 20.68 59.08 113.61 93.58 95.17 99.10 66.41 52.87 4 478470 Transcript 0 2.16 2.87 7.69 3.62 6.79 8.88 17.21 5.86 11.79 3.42 4.62 7.09 7.10 4.82 3.95 3.58 1.75 12.22 8.37 4.90 4.80 7.57 6.53 5 472642 Transcript 0 0.36 1.02 0.31 0.34 0.90 0.62 0.67 0.00 0.31 0.86 0.65 0.00 0.00 0.42 0.83 0.50 0.01 0.93 0.53 0.36 7.60 1.05 1.48 6 470370 Transcript 0 9.04 5.79 8.83 2.34 4.96 1.57 13.66 9.77 11.21 4.13 0.83 0.51 0.55 1.14 4.25 5.08 4.23 8.29 8.62 7.88 1.57 0.89 7.54 7 482053 Transcript 0 37.27 22.31 41.91 31.06 60.25 24.85 48.27 21.37 48.26 21.19 27.14 12.73 12.26 16.55 21.29 27.46 13.43 34.23 27.21 23.00 11.83 22.45 11.55 8 470072 Transcript 0 20.37 13.83 23.21 12.00 25.38 18.95 29.48 15.76 23.05 10.89 9.43 10.13 8.81 7.01 6.90 5.09 6.01 7.15 7.22 8.84 2.23 18.54 4.66 9 ER1a ExonRegion 0 0.67 1.07 1.26 0.00 1.39 5.64 1.64 0.12 5.85 0.00 0.63 0.00 0.00 0.42 0.00 0.00 0.00 1.19 1.46 1.34 0.65 1.62 1.52 10 E1a_E5a KnownJunction 0 9.56 19.21 9.70 2.60 18.68 2.16 28.31 4.31 23.61 0.00 12.27 0.00 0.00 2.12 4.45 0.00 3.55 4.06 17.88 15.60 6.18 10.04 7.60 11 ER1b ExonRegion 0 4.97 11.26 6.50 1.62 9.98 4.94 14.67 2.59 22.37 1.81 7.66 0.00 0.36 2.81 2.34 0.00 1.65 10.30 21.19 15.63 6.36 5.37 5.76 12 ER1c ExonRegion 0 7.88 10.51 11.42 6.90 12.87 77.14 15.07 7.02 13.61 14.15 8.06 0.00 0.00 8.98 12.22 5.75 9.27 107.13 96.71 31.42 37.37 31.70 53.42 13 E1_Ac KnownBoundary 0 24.82 16.51 23.80 11.65 16.47 173.88 46.99 15.53 32.84 29.39 9.69 0.00 5.84 19.25 17.80 23.84 9.07 205.28 135.91 47.43 61.78 65.15 127.36 14 ER1d ExonRegion 1 36.61 50.25 75.31 33.68 50.98 148.47 83.86 51.31 83.91 60.67 81.46 5.36 6.23 46.27 45.42 36.04 44.29 119.88 132.19 86.21 86.96 75.66 68.66 15 E1b_E4a KnownJunction 0 0.00 0.00 4.79 1.60 3.74 0.00 2.21 2.55 3.04 4.49 5.26 12.60 0.00 4.71 0.00 3.67 0.00 8.54 8.56 2.36 5.75 6.25 0.00 16 E1b_E5a KnownJunction 1 97.13 101.50 352.00 125.96 86.59 139.58 167.82 217.61 329.11 258.22 328.45 6.30 19.15 58.51 73.92 35.89 149.04 190.81 115.67 195.14 239.45 41.15 80.58 17 ER2a ExonRegion 0 0.71 2.05 0.61 0.68 1.80 1.23 1.33 0.00 0.63 1.72 1.30 0.00 0.00 0.83 1.66 1.00 0.02 1.86 1.07 0.71 3.28 2.10 2.96 18 E2a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.92 0.00 0.00 19 ER3a ExonRegion 0 18.08 11.59 17.66 4.68 9.91 3.13 25.06 19.54 22.43 8.27 1.65 1.02 1.10 2.29 8.51 10.16 8.46 16.59 17.24 15.76 3.14 1.78 15.08 20 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 I3_SR1 SilentIntronRegion 0 8.23 8.87 25.99 10.38 18.58 3.45 30.32 21.68 24.15 8.32 1.49 5.97 8.05 1.47 8.15 16.18 9.80 7.20 15.93 13.83 3.08 2.22 16.50 22 I3_AR3 ActiveIntronRegion 0 3.71 5.44 14.07 3.92 0.00 1.56 36.20 7.16 14.46 5.54 1.46 16.79 18.27 3.15 8.04 7.90 15.69 9.27 9.78 22.86 2.59 5.57 5.98 23 I3_AR4 ActiveIntronRegion 1 6.35 4.65 15.32 4.58 0.00 0.52 20.14 7.65 24.35 6.31 0.00 11.13 16.75 4.87 15.34 7.64 18.63 19.40 20.25 26.90 3.78 1.64 10.07 24 I3_AR5 ActiveIntronRegion 0 6.67 4.64 7.69 2.44 5.07 4.36 21.85 5.92 15.75 4.38 1.60 8.36 9.35 2.81 5.97 12.06 13.13 11.95 8.74 18.55 4.96 3.08 9.51 25 ER4a ExonRegion 0 2.99 5.26 11.79 5.94 9.34 8.25 34.22 9.32 17.90 3.08 6.22 8.66 13.66 9.74 11.86 7.07 5.24 19.42 16.55 9.32 6.13 8.06 15.42 26 E4a_E5a KnownJunction 0 3.48 3.35 6.50 3.33 7.30 18.40 15.19 5.71 14.44 2.69 2.37 0.00 7.63 0.00 0.00 0.00 0.00 8.71 0.00 3.00 2.53 8.39 4.18 27 E5_Aa NovelBoundary 1 27.41 9.21 17.44 5.49 10.78 0.00 22.57 7.93 9.23 8.57 0.00 0.00 28.41 7.06 4.45 8.72 12.44 7.42 3.76 11.57 0.00 16.78 7.77 28 ER5a ExonRegion 1 113.26 98.40 264.02 106.97 136.13 170.65 173.02 190.51 310.27 197.43 136.70 12.75 25.27 69.75 80.91 75.79 67.81 190.34 177.54 133.24 134.79 100.07 83.20 29 E5a_E6a KnownJunction 1 204.85 186.35 434.34 241.76 191.09 134.58 94.64 317.71 539.84 248.10 84.81 12.60 27.43 62.75 48.58 100.23 12.25 354.88 179.11 66.60 90.13 98.59 73.16 30 ER6a ExonRegion 0 322.86 353.01 647.28 387.34 657.60 995.81 724.89 486.56 720.22 397.74 395.31 207.56 295.54 208.99 184.40 116.35 201.26 489.76 442.81 408.85 210.58 533.01 172.05 31 E6a_E7a KnownJunction 1 332.06 313.04 684.36 453.02 632.94 919.87 999.05 490.55 647.77 452.01 268.80 242.78 374.00 252.05 181.22 73.83 101.54 325.20 358.88 357.42 90.94 482.95 159.12 32 I6 Intron 0 4.83 4.33 6.05 5.67 7.47 4.63 22.03 5.84 10.93 3.84 7.94 12.57 15.67 5.06 2.92 8.33 10.47 12.58 9.66 9.53 2.55 7.09 3.94 33 I6_SR1 SilentIntronRegion 0 3.52 3.16 3.19 1.62 4.29 4.72 11.71 3.85 3.98 0.82 4.50 13.34 22.00 4.10 1.80 7.75 5.79 3.36 5.21 6.11 2.41 1.15 3.26 34 I6_AR1 ActiveIntronRegion 0 0.00 3.30 6.59 3.58 8.03 3.67 20.52 8.64 13.12 1.15 3.87 17.32 23.45 14.62 11.61 7.80 3.30 1.85 1.99 4.26 0.83 0.00 0.00 35 I6_AR2 ActiveIntronRegion 0 4.02 9.78 9.55 6.92 10.22 3.19 18.27 10.82 20.30 6.32 11.38 16.07 20.03 4.50 4.46 9.99 15.79 15.21 13.88 11.31 1.27 11.23 3.23 36 E7_Aa NovelBoundary 0 3.63 11.91 5.74 8.76 0.00 0.00 24.55 2.55 24.59 9.72 5.16 12.60 20.45 14.83 6.30 8.63 4.77 2.11 0.00 15.40 0.00 3.12 3.24 37 ER7a ExonRegion 0 390.33 419.43 489.19 317.67 404.04 800.60 725.37 381.61 536.83 338.72 137.14 122.95 144.66 63.79 70.78 47.73 65.66 138.14 149.87 184.93 27.85 173.33 71.61 38 E7_Da NovelBoundary 0 7.04 6.51 1.21 9.79 14.69 10.05 30.69 15.77 15.80 7.66 22.80 18.76 20.13 12.89 0.00 11.36 25.34 12.10 28.61 6.07 2.84 16.47 8.02 39 E7a_E8c KnownJunction 1 605.81 732.50 583.95 382.47 448.30 833.95 810.25 454.85 639.55 346.38 211.05 390.13 281.15 70.58 137.09 83.65 79.94 94.80 124.99 208.88 29.65 222.89 91.34 40 I7 Intron 0 7.31 13.55 11.62 13.33 20.46 12.77 33.80 12.87 28.63 10.08 14.90 32.55 28.58 13.54 3.77 13.60 13.32 14.76 10.61 15.29 4.95 20.07 9.49 41 I7_SR1 SilentIntronRegion 0 4.81 10.96 8.60 13.07 17.25 13.52 33.88 12.20 30.27 10.53 16.28 31.82 29.15 14.50 2.54 14.01 13.68 16.91 11.17 17.58 5.71 19.52 10.46 42 I7_AR1 ActiveIntronRegion 0 13.88 22.39 21.02 21.00 33.46 13.53 43.40 17.76 35.24 13.30 14.13 46.23 37.83 11.91 7.10 11.95 15.07 14.44 10.33 13.82 2.56 28.13 6.49 43 E8_Aa NovelBoundary 0 17.04 14.41 43.82 19.58 42.87 7.15 29.01 13.47 42.13 20.66 32.01 6.30 12.66 11.83 14.96 48.79 25.99 55.17 66.45 16.23 17.42 20.39 23.47 44 ER8a ExonRegion 0 37.27 22.31 41.91 31.06 60.25 24.85 48.27 21.37 48.26 21.19 27.14 12.73 12.26 16.55 21.29 27.46 13.43 34.23 27.21 23.00 11.83 22.45 11.55 45 E8_Ab KnownBoundary 0 69.79 16.44 52.57 48.25 76.40 20.22 79.27 41.69 67.36 33.82 39.12 18.61 19.97 17.72 9.64 42.21 12.72 36.11 27.58 22.12 8.53 29.94 7.26 46 ER8b ExonRegion 0 67.65 38.46 51.19 37.86 101.96 42.93 68.74 41.81 56.00 30.57 28.62 25.45 20.23 12.56 19.50 19.47 11.45 19.97 17.07 25.66 6.69 27.81 9.52 47 E8_Ac KnownBoundary 0 72.24 48.94 48.46 34.46 107.89 68.03 97.42 55.57 44.18 26.41 18.00 18.16 33.76 12.18 22.87 12.82 9.54 10.86 8.38 19.56 5.56 27.80 12.72 48 ER8c ExonRegion 1 549.08 689.89 835.20 531.06 470.98 835.69 897.46 605.14 805.96 456.53 232.71 450.57 225.29 211.74 207.65 126.16 121.60 198.24 356.53 327.32 54.07 619.70 144.58 49 E8_Da KnownBoundary 0 6.15 13.09 21.50 9.46 18.34 30.72 28.22 13.47 11.00 3.17 7.16 6.30 6.82 14.60 0.00 0.00 12.62 0.00 4.05 6.52 0.00 29.70 0.00 50 E8a_E8d KnownJunction 0 679.23 864.91 901.54 592.43 756.11 1009.36 1102.26 618.12 841.63 493.24 380.36 329.21 156.81 271.29 288.03 244.38 165.22 222.27 674.28 506.29 85.31 947.28 232.27 51 ER8d ExonRegion 0 21.54 21.31 35.60 17.04 32.83 26.20 37.81 16.80 24.47 12.65 9.49 11.95 5.04 9.10 6.74 4.79 6.30 9.24 7.87 6.76 2.82 24.15 4.92 52 E8_Ad KnownBoundary 0 12.67 15.39 15.58 7.03 17.32 20.10 23.10 10.56 14.58 8.00 0.00 26.26 12.99 2.30 0.00 0.00 0.00 3.90 4.52 0.00 0.00 0.00 6.91 53 ER8e ExonRegion 0 506.31 723.90 1110.15 667.45 928.12 1056.71 1063.07 722.40 1006.95 562.60 501.51 477.65 342.25 298.00 291.38 228.61 219.55 430.98 690.10 519.26 121.08 794.55 280.09 54 E8_Db NovelBoundary 0 141.88 272.52 559.89 333.09 493.46 476.09 626.32 312.94 425.52 244.66 224.21 166.70 149.18 129.26 74.91 51.35 135.20 190.40 291.87 248.25 63.14 326.25 104.40 55 E8d_E9a KnownJunction 0 729.17 766.31 1010.20 571.56 1009.59 1142.07 1031.29 653.20 903.49 461.86 411.95 444.14 458.25 189.30 279.25 266.25 161.76 525.46 631.08 403.76 134.30 626.23 285.97 56 ER8f ExonRegion 0 510.61 627.36 1033.29 594.22 952.57 1082.86 988.34 678.85 947.64 519.26 475.98 479.49 425.62 244.84 239.35 241.49 212.91 517.37 636.28 445.21 132.22 661.00 295.13 57 ER8g ExonRegion 0 557.35 651.76 970.09 582.41 888.79 1066.05 965.83 651.05 916.66 502.34 423.30 452.43 402.56 237.39 221.95 239.26 195.85 533.69 632.83 402.13 134.79 617.76 295.13 58 ER9a ExonRegion 0 468.60 549.24 973.89 544.37 703.79 922.13 936.07 628.23 937.35 492.71 399.76 329.04 174.96 264.20 249.51 310.33 168.47 602.79 745.18 333.50 200.99 636.46 357.02 59 E9_Da KnownBoundary 0 28.38 3.16 17.03 4.73 18.68 0.00 26.01 16.68 25.75 12.33 5.37 0.00 0.00 2.47 0.00 3.76 8.98 1.70 0.00 24.80 0.00 13.29 0.00 60 E9a_E10a KnownJunction 0 347.77 635.61 1656.12 976.57 1292.87 1358.08 1558.81 927.04 1324.73 681.14 799.41 753.10 373.03 378.54 407.69 501.15 338.48 798.14 1002.48 507.76 329.77 1016.23 508.17 61 ER9b ExonRegion 0 19.21 6.35 10.82 6.96 17.92 11.70 21.16 14.72 21.63 9.13 9.38 8.31 12.59 4.92 7.05 5.40 5.73 5.07 6.57 10.93 1.65 12.93 4.40 62 E9_Db NovelBoundary 0 13.48 11.58 12.30 3.36 43.80 17.60 49.68 11.87 27.05 14.32 9.74 6.30 21.10 2.35 8.90 3.33 0.00 4.39 8.85 10.16 5.62 11.27 3.76 63 I9 Intron 0 16.75 5.66 12.84 5.37 16.08 11.82 18.24 13.59 19.95 8.52 10.48 11.64 22.16 7.85 13.36 9.15 7.74 12.11 9.34 9.66 3.23 9.16 4.73 64 I9_AR1 ActiveIntronRegion 0 21.62 7.21 17.55 6.84 18.32 15.05 23.52 18.11 25.23 11.17 13.54 13.40 24.54 9.84 16.13 11.57 11.03 16.94 12.24 11.49 3.93 12.45 6.18 65 ER10a ExonRegion 0 375.48 497.31 1532.52 823.58 929.28 977.41 934.31 865.97 1185.40 644.67 716.22 578.74 214.14 394.97 387.30 430.10 336.87 714.65 1212.71 563.81 339.29 1286.21 435.63 66 E10_Da KnownBoundary 0 544.10 564.83 975.75 531.60 957.30 1097.55 1011.64 710.70 994.46 589.03 584.57 298.00 149.99 385.25 428.58 342.73 284.62 576.82 1005.77 595.45 360.04 1006.31 460.36 67 ER10b ExonRegion 0 522.64 755.32 1316.11 758.97 990.91 1054.22 1043.33 831.22 1083.81 663.11 606.42 395.53 119.25 361.15 362.23 435.90 268.26 675.56 1069.66 485.75 225.42 1217.75 437.98 68 E10_Db KnownBoundary 0 404.89 622.59 723.90 466.87 901.53 628.96 688.41 674.35 844.75 511.26 323.45 307.75 89.60 267.70 365.41 134.58 140.53 234.58 440.86 407.98 97.98 753.36 201.46 69 ER10c ExonRegion 0 591.61 549.48 893.12 572.57 734.04 759.42 687.71 697.33 844.80 558.30 319.54 236.20 118.20 206.08 303.82 127.46 115.57 165.57 403.05 380.72 61.68 862.34 197.65 70 E10_Dc KnownBoundary 0 911.57 567.86 990.77 641.71 705.18 672.34 708.28 741.51 819.93 525.69 222.42 147.80 122.07 223.03 324.87 128.94 105.84 85.10 471.45 367.84 59.55 1424.47 176.36 71 ER10d ExonRegion 0 85.33 82.88 135.75 70.46 125.69 89.28 103.49 104.75 109.65 67.57 28.48 34.04 18.19 26.56 27.62 20.39 18.91 42.89 68.34 58.96 20.47 126.37 24.60