Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CSGLCA-T Gene 0 63.25 20.50 86.43 36.72 42.96 62.17 35.27 48.73 85.93 62.51 90.62 54.24 42.54 151.10 236.47 173.27 111.67 47.90 73.80 38.00 368.39 255.05 244.34 2 482173 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 3.83 0.00 0.00 0.00 2.47 0.00 0.00 3 495645 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 377851 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 35307 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 463723 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 465601 Transcript 0 41.54 13.40 19.27 15.07 26.33 16.19 19.88 14.07 18.98 12.80 17.10 36.96 14.21 14.79 25.26 16.36 8.72 7.09 12.97 12.58 17.67 28.35 16.04 8 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 5.28 0.54 0.00 0.00 0.00 0.00 2.00 0.00 0.00 9 ER1b ExonRegion 0 3.43 0.80 7.65 1.36 2.66 8.61 4.32 8.80 19.63 11.19 31.57 9.32 15.78 50.09 75.16 54.86 29.88 17.76 20.14 9.38 132.78 64.54 56.74 10 E1_Da KnownBoundary 0 6.89 6.38 22.97 8.62 26.91 85.35 27.56 19.67 44.85 24.10 34.32 0.00 26.13 65.34 131.65 104.08 33.57 35.44 20.89 17.45 258.79 67.97 115.84 11 E1a_E1c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 3.83 0.00 0.00 0.00 2.47 0.00 0.00 13 ER1c ExonRegion 0 38.32 20.39 71.01 29.94 45.51 62.65 41.58 46.36 94.02 67.91 92.33 71.34 53.80 177.02 232.45 184.02 133.57 48.47 86.33 46.30 434.94 293.42 286.33 14 E1_Ac KnownBoundary 0 22.67 25.19 94.35 41.59 49.15 80.18 40.10 62.51 88.08 68.39 109.08 85.23 87.49 135.50 244.52 182.00 131.74 62.64 89.32 55.16 544.38 236.79 290.58 15 ER1d ExonRegion 0 51.01 20.40 102.31 40.68 41.69 82.14 49.17 57.77 107.80 82.17 138.20 78.00 75.19 193.56 265.74 234.75 158.85 70.51 93.68 46.92 496.44 315.54 349.54 16 E1b_E2a KnownJunction 0 55.71 12.63 83.65 46.11 29.80 67.57 56.48 60.99 99.04 71.91 99.92 45.16 73.37 194.19 245.87 214.64 140.35 91.49 94.03 54.46 519.73 326.25 314.99 17 ER2a ExonRegion 0 40.99 17.54 90.72 36.08 23.83 53.82 23.78 43.27 81.80 65.47 86.14 52.56 44.56 159.09 229.93 161.87 133.06 56.51 76.35 43.79 412.58 285.39 251.39 18 E2_Da KnownBoundary 0 54.08 14.73 88.26 61.43 33.45 116.58 47.56 47.32 81.63 65.36 56.49 18.01 26.78 195.48 234.63 170.81 97.05 80.30 112.10 37.07 377.83 287.00 285.20 19 ER2b ExonRegion 0 59.97 17.91 85.23 38.66 34.37 78.78 37.68 42.81 73.52 64.79 95.22 82.64 58.29 179.80 252.23 178.26 108.33 82.47 89.44 35.08 419.12 241.68 255.04 20 E2_Ab KnownBoundary 1 70.61 26.18 89.06 58.93 34.30 59.97 22.70 75.21 98.96 62.37 113.03 91.08 13.31 227.91 268.25 262.41 116.97 73.08 135.44 34.20 460.55 282.35 296.55 21 ER2c ExonRegion 0 32.81 17.42 83.18 33.44 22.70 68.53 30.40 46.11 87.31 72.76 117.68 51.60 48.44 166.86 244.21 179.14 122.58 57.13 90.89 39.00 464.87 255.92 239.38 22 E2_Db NovelBoundary 1 13.19 5.85 38.11 14.78 7.89 38.78 12.23 29.57 20.37 29.68 38.64 26.41 33.11 41.50 58.72 104.67 25.99 60.56 44.52 23.84 59.62 19.53 50.96 23 E2b_E3a KnownJunction 0 41.93 5.92 77.53 17.38 37.10 60.25 20.89 43.50 95.72 52.60 90.44 74.57 63.96 129.26 304.59 215.67 118.37 19.28 96.57 18.60 454.80 323.25 282.89 24 E2b_E5a NovelJunction 0 3.26 0.00 23.54 19.81 0.00 10.85 17.53 4.27 9.23 5.16 16.69 6.30 0.00 9.89 4.45 16.66 4.30 20.10 14.40 5.69 17.42 36.31 11.87 25 I2 Intron 0 22.11 16.53 21.32 11.51 22.47 29.30 23.86 17.76 21.86 24.74 27.72 32.24 13.96 50.00 42.99 58.64 25.92 26.72 57.41 21.21 39.27 62.02 51.72 26 I2_AR1 ActiveIntronRegion 1 22.17 16.57 21.38 11.54 22.53 29.37 23.92 17.81 21.92 24.80 27.79 32.32 13.99 50.12 43.11 58.80 25.99 26.79 57.56 21.27 39.37 62.19 51.86 27 E3_Aa NovelBoundary 0 78.46 53.81 57.09 34.89 83.96 159.62 74.33 43.70 46.59 39.76 56.59 30.31 66.72 59.80 73.31 108.69 33.29 42.78 93.56 43.72 76.17 69.32 93.22 28 ER3a ExonRegion 0 70.86 15.67 84.28 33.25 46.64 69.98 38.16 62.72 114.63 73.11 120.63 72.91 52.46 173.74 295.79 252.00 121.97 49.03 83.52 40.36 469.33 278.04 318.57 29 E3_Da NovelBoundary 0 87.27 32.03 27.53 29.30 31.32 27.09 27.03 47.19 33.82 26.57 48.96 19.81 19.80 48.62 53.03 24.69 43.10 45.52 34.82 29.59 75.92 31.05 83.40 30 E3a_E4a KnownJunction 0 3.78 2.57 0.00 0.00 0.00 2.44 0.00 0.00 3.27 0.00 2.42 7.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.31 0.00 0.00 31 E3a_E5a KnownJunction 0 88.24 5.13 73.24 12.35 32.68 43.55 14.53 37.71 82.12 44.40 114.71 62.27 27.27 142.92 228.44 246.09 119.68 17.95 69.65 11.63 515.90 253.08 280.59 32 I3 Intron 0 94.34 36.09 29.35 21.85 37.38 31.26 39.03 33.47 29.06 32.24 24.58 26.55 18.97 48.04 41.73 49.42 28.60 28.23 48.51 26.16 56.95 55.90 54.99 33 I3_AR1 ActiveIntronRegion 0 94.85 36.28 29.51 21.97 37.58 31.43 39.25 33.65 29.22 32.42 24.71 26.69 19.07 48.31 41.95 49.69 28.75 28.38 48.78 26.30 57.25 56.19 55.28 34 E4_Aa NovelBoundary 0 132.47 57.36 47.63 48.71 91.00 85.35 76.14 53.31 41.55 56.44 48.12 76.37 61.36 54.80 47.59 54.34 33.10 26.53 31.15 35.28 55.72 85.97 64.19 35 ER4a ExonRegion 1 94.18 37.64 54.88 45.21 75.77 46.12 52.17 37.48 46.99 38.41 43.98 71.87 29.00 41.91 61.45 45.76 26.16 21.28 38.91 35.26 42.44 85.04 48.12 36 E4_Da NovelBoundary 1 112.98 44.93 101.77 60.40 88.20 99.54 67.79 53.56 62.93 56.54 32.01 113.14 60.06 49.21 58.97 57.76 54.60 32.33 49.70 46.92 17.36 86.46 63.60 37 E4a_E5a KnownJunction 0 26.67 0.00 2.93 0.00 3.23 0.00 7.46 4.72 6.68 0.00 4.90 31.96 13.64 2.47 14.34 3.33 0.00 0.00 0.00 2.49 5.25 0.00 0.00 38 I4 Intron 0 17.13 8.23 0.00 0.00 6.50 22.27 11.79 0.00 0.00 0.00 17.21 20.41 10.05 21.17 30.16 19.25 10.69 1.50 5.16 6.89 12.52 13.53 26.24 39 I4_AR1 ActiveIntronRegion 0 17.41 8.36 0.00 0.00 6.56 22.63 11.98 0.00 0.00 0.00 17.49 20.74 10.21 21.51 30.65 19.56 10.86 1.52 5.24 7.00 12.72 13.74 26.67 40 E5_Aa NovelBoundary 1 94.98 16.44 61.68 20.01 42.53 63.03 21.68 22.76 42.45 29.28 23.85 61.07 19.32 28.31 66.51 58.28 37.87 18.86 26.92 35.35 56.09 59.70 40.12 41 ER5a ExonRegion 0 114.80 23.18 101.35 52.55 39.20 78.86 44.32 60.42 100.80 67.28 92.98 61.60 41.70 175.37 299.91 240.49 131.09 61.10 78.23 41.14 430.83 310.83 326.93 42 E5_Da KnownBoundary 0 155.51 10.98 96.71 48.41 47.28 71.61 66.02 44.03 74.25 51.79 109.45 29.71 27.11 148.04 241.92 285.74 126.88 72.71 57.04 47.23 367.58 346.03 299.97 43 ER5b ExonRegion 0 120.90 25.42 153.92 59.90 59.12 82.76 41.16 66.75 94.62 76.96 114.03 48.38 41.20 178.82 340.53 229.50 137.96 54.28 87.11 38.83 440.89 327.30 307.38 44 E5_Db KnownBoundary 1 292.27 52.36 121.43 49.51 87.86 124.13 50.35 69.54 96.82 72.45 94.55 30.91 40.42 210.25 331.91 382.46 105.00 59.03 183.44 24.29 361.27 474.62 466.34 45 E5b_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 ER5c ExonRegion 1 80.42 24.35 98.23 35.74 48.65 59.39 23.46 55.27 86.44 56.41 81.06 18.40 16.97 122.48 249.55 130.87 82.55 29.15 49.57 29.54 268.95 223.85 176.12 47 E5_Ab KnownBoundary 1 26.45 9.54 55.53 24.97 11.80 37.42 11.26 68.18 167.45 102.56 138.14 6.30 6.01 91.65 178.01 102.45 131.09 24.50 33.22 35.41 249.58 227.36 88.27 48 ER5d ExonRegion 1 45.23 20.03 56.13 36.61 29.96 30.52 11.53 52.17 146.28 64.84 74.31 11.34 25.08 80.04 156.70 126.54 50.88 64.11 66.13 35.45 112.82 134.91 102.94 49 E5_Dc KnownBoundary 1 150.32 40.32 77.73 69.22 176.40 124.08 46.68 93.53 169.47 93.00 93.08 13.05 21.59 133.85 111.26 211.23 58.16 112.67 89.41 29.98 182.00 185.90 285.03 50 ER5e ExonRegion 1 61.05 17.54 33.93 30.71 48.92 50.83 19.07 25.44 51.45 16.16 36.91 7.98 8.65 69.43 87.49 96.87 20.63 55.78 35.74 10.77 78.58 81.78 129.49 51 ER5f ExonRegion 0 4.23 1.36 3.27 3.18 0.89 4.28 0.44 5.76 7.00 3.06 1.93 0.00 0.00 8.12 4.84 6.93 3.30 3.70 2.12 0.00 11.02 6.95 11.75