Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC013434.2 Gene 0 27.01 24.95 17.53 26.09 19.56 5.71 26.25 11.20 11.70 6.36 3.41 17.86 16.30 5.78 9.88 10.08 10.17 5.56 12.22 10.44 3.63 8.23 9.96 2 502221 Transcript 0 9.36 10.66 4.33 6.01 7.41 2.92 12.69 3.48 3.41 3.02 2.68 8.79 6.54 4.20 8.89 9.36 4.54 2.90 4.86 7.85 3.41 3.74 4.64 3 ER1a ExonRegion 0 27.48 25.07 18.14 27.07 19.81 5.65 26.15 11.53 12.01 6.38 3.23 17.74 16.45 5.56 9.34 9.35 10.18 5.51 12.34 9.96 3.34 8.25 9.96 4 E1_Da NovelBoundary 0 13.48 28.42 109.81 111.37 16.81 21.86 30.60 129.59 139.15 155.05 9.84 6.00 0.00 3.00 6.06 25.98 25.43 115.61 13.74 57.08 11.43 0.00 11.78 5 Ix_AR2 ActiveIntronRegion 0 15.53 7.37 9.52 20.46 7.57 3.24 24.57 7.06 6.18 2.72 1.54 8.46 12.61 2.31 4.75 4.99 7.29 5.11 9.57 8.65 2.73 2.58 4.93 6 Ix Intron 0 11.58 10.71 13.03 23.18 10.09 3.38 23.58 7.17 10.22 5.49 3.44 16.97 14.44 4.07 5.23 6.78 9.01 2.38 6.60 8.21 2.00 8.54 9.25 7 Ix_AR5 ActiveIntronRegion 0 6.31 14.70 5.48 14.21 10.06 2.59 23.94 7.98 7.34 3.63 2.66 20.78 21.79 6.38 5.31 5.45 3.87 1.06 2.26 5.91 0.78 15.74 8.67 8 Ix_SR5 SilentIntronRegion 0 6.90 8.85 5.96 18.78 8.20 2.99 23.64 3.50 5.46 4.28 3.70 24.12 13.08 5.90 6.44 6.80 9.39 2.62 12.01 6.58 2.99 11.03 13.46 9 Ix_SR4 SilentIntronRegion 0 5.42 6.69 6.93 17.23 5.56 2.97 20.88 4.40 8.33 3.71 4.31 17.10 14.24 4.06 3.58 7.54 10.66 2.98 6.66 8.43 2.49 8.56 10.60 10 Ix_AR3 ActiveIntronRegion 0 12.80 20.64 25.01 32.10 14.67 4.20 28.06 7.81 15.67 6.63 4.01 6.75 19.01 3.99 9.09 8.40 14.29 1.83 7.28 9.02 2.86 3.45 4.26 11 Ix_SR3 SilentIntronRegion 0 19.62 14.79 18.91 30.24 12.86 2.32 22.73 8.14 12.12 6.22 2.01 12.70 13.27 3.58 7.32 7.28 6.90 1.66 6.82 6.74 0.87 4.78 5.31 12 Ix_AR2 ActiveIntronRegion 0 49.71 25.64 57.71 63.47 41.46 5.11 45.90 20.96 22.54 12.51 3.41 25.51 21.19 5.84 11.39 8.51 9.09 2.97 7.41 10.87 1.34 7.73 11.13 13 Ix_SR2 SilentIntronRegion 0 27.45 22.77 25.91 42.33 14.80 5.52 26.80 17.95 16.75 13.00 2.42 11.55 15.01 3.07 6.35 5.56 4.00 1.70 7.32 10.63 2.71 7.14 10.15 14 Ix_AR1 ActiveIntronRegion 0 17.67 14.85 19.62 27.33 10.85 6.04 29.32 12.60 13.57 9.80 1.46 16.22 11.56 2.67 6.59 6.05 8.56 1.99 5.15 9.81 1.61 8.82 6.41 15 Ix_SR1 SilentIntronRegion 0 9.24 7.46 9.10 21.24 8.58 3.50 18.25 7.08 11.58 6.40 1.21 15.52 9.52 2.28 5.13 3.22 5.89 1.01 6.20 6.77 0.64 7.53 4.87 16 Ix Intron 0 3.14 3.02 7.11 3.76 3.23 9.69 2.46 1.19 8.87 2.38 3.05 12.37 18.29 6.47 18.33 7.17 15.00 1.87 4.73 4.34 5.52 6.18 8.99 17 Ix_AR3 ActiveIntronRegion 0 4.53 4.35 11.42 5.68 4.84 12.37 4.14 1.69 14.53 4.22 5.09 21.95 28.50 11.03 29.21 10.76 24.44 2.57 8.38 6.30 9.06 9.94 14.98 18 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.14 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER2a ExonRegion 0 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 1.17 1.29 1.98 0.00 0.00 0.00 0.47 0.00 0.00 0.98 20 E3_Aa NovelBoundary 0 16.45 5.46 11.80 17.21 12.82 0.00 15.37 12.77 9.49 6.37 0.00 5.55 6.66 0.00 4.45 13.07 3.46 9.62 7.44 7.73 9.76 5.08 11.52 21 ER3a ExonRegion 0 28.67 37.76 6.90 7.49 23.98 11.84 48.17 6.45 8.27 9.77 12.36 35.02 22.32 17.23 35.29 43.90 17.05 11.06 16.33 35.39 17.10 13.16 16.91 22 ER4a ExonRegion 0 0.00 1.12 0.67 1.50 0.67 0.00 1.85 0.78 0.00 0.57 0.48 0.00 0.47 1.22 7.40 0.89 0.00 0.83 0.48 1.28 0.00 1.04 0.00 23 Ix_AR3 ActiveIntronRegion 0 2.49 0.19 2.01 2.27 3.67 4.54 1.21 4.10 7.71 1.00 0.85 15.61 12.63 4.34 11.65 6.03 1.51 0.00 0.00 0.39 0.61 10.48 9.87 24 Ix_AR1 ActiveIntronRegion 0 1.23 0.00 0.86 2.83 1.53 5.44 0.21 3.47 9.11 1.87 3.54 9.19 9.45 9.10 8.10 9.92 2.35 0.47 7.47 0.00 4.12 20.80 23.94 25 Ix Intron 0 1.96 0.50 1.58 0.38 0.99 1.70 1.06 1.27 6.13 0.63 1.55 10.57 12.44 1.03 4.07 3.30 2.85 0.00 2.55 0.13 1.49 7.32 19.74 26 Ix_SR2 SilentIntronRegion 0 1.28 0.60 0.63 0.00 0.42 1.14 0.39 1.72 1.78 0.25 2.01 4.67 4.40 1.25 4.38 3.91 2.80 0.00 3.11 0.32 1.96 3.93 27.19 27 Ix_AR1 ActiveIntronRegion 0 2.89 0.56 2.18 0.28 1.08 2.26 1.27 1.23 9.34 1.17 1.55 13.47 16.24 0.83 4.12 3.32 2.93 0.00 2.36 0.00 1.13 8.87 14.90 28 Ix_SR1 SilentIntronRegion 0 0.97 0.00 2.52 1.87 2.46 1.57 2.43 0.00 8.92 0.00 0.16 19.27 24.72 1.04 2.98 1.37 2.74 0.00 1.46 0.00 1.29 12.71 12.94 29 Ix_AR1 ActiveIntronRegion 0 4.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 1.69 2.11 0.00 0.00 2.26 0.00 1.53 1.48 10.40 30 Ix_SR1 SilentIntronRegion 0 1.96 0.00 3.68 0.84 1.42 0.00 0.79 1.17 6.39 0.91 0.00 0.00 0.00 0.27 4.50 1.58 0.00 0.00 0.00 1.13 3.01 1.11 11.69 31 Ix_AR1 ActiveIntronRegion 0 1.36 1.40 2.36 0.00 9.66 6.98 1.01 1.68 4.85 0.00 1.15 2.13 0.00 1.02 4.20 2.26 0.00 0.00 2.42 0.00 4.24 2.71 16.39 32 Ix Intron 0 22.21 2.14 8.81 9.56 14.85 6.63 11.37 9.70 29.51 1.53 1.15 10.37 17.65 0.83 6.85 7.11 6.55 0.59 2.68 2.70 5.34 3.78 30.17 33 Ix_SR7 SilentIntronRegion 0 4.07 0.60 2.91 1.92 3.23 3.29 2.45 4.05 11.92 1.15 1.04 2.72 3.17 0.47 3.30 4.52 3.45 0.33 1.15 0.96 5.13 1.59 17.30 34 Ix_AR8 ActiveIntronRegion 0 14.87 1.77 7.35 5.21 13.48 4.94 10.16 12.06 27.98 1.00 1.35 14.77 12.75 1.33 4.95 11.50 8.01 0.32 1.47 1.49 6.46 3.66 34.57 35 Ix_SR6 SilentIntronRegion 0 21.67 2.36 7.67 10.80 17.22 7.06 13.14 10.55 38.14 2.05 1.52 10.90 20.31 0.92 10.05 6.90 7.18 0.46 3.96 4.06 5.93 3.65 33.38 36 Ix_AR7 ActiveIntronRegion 0 20.67 0.62 7.64 13.22 17.17 7.83 11.64 5.91 29.29 1.84 1.76 6.16 7.17 0.90 4.49 5.54 4.70 0.00 1.97 3.31 4.47 1.43 27.55 37 Ix_AR6 ActiveIntronRegion 0 11.35 2.66 7.99 10.10 15.04 5.25 10.15 6.98 30.17 3.32 1.01 8.02 9.14 0.35 5.25 7.64 5.01 0.00 1.62 4.31 4.77 1.88 34.19 38 Ix_AR4 ActiveIntronRegion 0 12.49 0.92 14.36 13.52 18.63 6.66 11.20 10.52 33.98 1.81 0.00 8.32 20.08 0.81 8.88 1.78 7.49 0.28 2.89 1.93 2.00 6.31 24.00 39 Ix_SR4 SilentIntronRegion 0 61.34 1.94 9.35 24.40 22.11 14.20 18.51 14.32 47.79 1.21 3.73 29.05 32.68 0.47 9.08 8.17 8.45 0.49 3.93 1.72 6.59 6.05 28.93 40 Ix_AR3 ActiveIntronRegion 0 52.12 2.02 15.25 14.02 32.17 13.18 21.91 18.64 48.71 2.90 1.28 18.09 27.64 0.87 13.55 13.75 9.68 1.80 3.32 3.44 6.05 7.76 46.80 41 Ix_SR3 SilentIntronRegion 0 64.30 0.21 1.10 2.62 4.43 8.07 6.82 5.90 16.88 0.74 1.07 4.18 7.49 0.00 4.24 3.72 6.41 0.00 0.00 0.00 3.04 4.26 21.77 42 Ix_AR2 ActiveIntronRegion 0 21.36 3.80 4.86 4.28 11.13 7.08 14.22 9.69 19.51 1.18 1.84 3.40 14.71 0.15 5.37 4.74 5.87 0.41 0.43 0.57 1.67 3.66 18.70 43 Ix_SR2 SilentIntronRegion 0 25.81 3.54 11.63 11.96 18.66 6.01 12.82 10.37 28.99 1.29 0.52 12.70 27.64 1.11 5.95 6.78 5.65 0.73 3.37 3.32 4.62 3.32 34.95 44 Ix_AR1 ActiveIntronRegion 0 21.24 2.23 15.16 10.80 10.76 6.65 11.72 9.85 33.18 0.78 0.58 10.08 15.41 1.29 6.45 11.38 11.02 1.39 3.73 4.63 10.15 5.92 37.60 45 ER5a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00