Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC018642.1 Gene 0 6.88 3.29 7.92 6.22 5.03 13.92 3.56 5.95 16.07 3.08 2.83 6.67 15.87 7.57 17.55 9.05 11.04 2.49 7.84 5.63 5.38 12.84 13.57 2 447514 Transcript 0 0.23 0.00 0.60 0.22 2.31 0.20 0.43 0.00 1.63 0.37 2.00 0.39 0.42 0.96 3.49 0.96 1.45 0.30 1.74 1.40 0.47 0.68 0.64 3 416220 Transcript 0 0.00 0.00 0.00 0.00 0.67 1.83 0.66 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.74 1.65 0.00 0.00 0.00 0.00 2.08 2.94 4 429067 Transcript 0 5.10 1.98 5.37 4.54 3.74 7.85 1.93 3.55 10.84 1.96 1.67 6.12 13.60 4.14 11.50 4.46 5.09 0.76 2.71 2.77 1.73 11.16 5.57 5 444245 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 454515 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 447904 Transcript 0 0.24 0.81 0.01 0.50 0.01 0.98 0.62 1.09 5.58 1.33 0.52 0.25 4.57 1.75 4.07 0.42 2.69 0.00 2.05 3.37 2.04 1.94 5.65 8 ER1a ExonRegion 0 0.46 0.00 1.20 0.44 0.29 0.40 0.87 0.00 1.47 0.75 1.78 0.78 0.85 1.92 1.79 1.91 2.89 0.60 3.49 2.79 0.94 1.37 1.29 9 E1_Da NovelBoundary 0 5.93 5.20 1.18 2.66 0.00 11.30 8.52 1.64 8.01 2.10 27.11 22.96 6.33 6.59 4.82 13.67 25.53 3.32 4.80 7.22 4.63 12.19 36.88 10 E1a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 4.33 0.00 0.00 0.00 1.79 0.00 2.21 0.00 0.00 0.00 5.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.67 1.83 0.66 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.74 1.65 0.00 0.00 0.00 0.00 2.08 2.94 12 ER2b ExonRegion 0 1.52 0.53 0.61 0.00 2.68 11.20 1.38 0.00 4.94 1.02 1.43 0.00 0.00 7.20 9.27 4.39 7.89 1.25 4.15 2.64 3.21 6.75 7.15 13 E2_Ac KnownBoundary 0 3.78 0.00 0.00 0.00 4.33 8.12 0.00 0.00 3.53 1.67 2.68 0.00 0.00 16.66 25.22 4.27 8.13 0.00 0.00 3.26 3.15 3.12 3.59 14 E2_Ad KnownBoundary 0 3.26 3.16 5.74 2.96 0.00 14.37 5.70 0.00 8.97 0.00 2.68 0.00 0.00 4.65 8.90 10.85 8.04 4.85 4.71 6.52 3.09 8.51 15.28 15 ER2c ExonRegion 0 4.23 2.03 4.90 0.00 1.85 20.03 2.95 0.00 8.65 1.15 3.87 0.00 0.00 10.12 23.43 11.89 13.71 3.70 9.56 6.38 8.14 11.06 14.23 16 ER2d ExonRegion 0 5.56 0.52 6.36 1.59 1.21 11.60 4.11 1.80 10.56 0.25 2.22 0.51 5.10 5.06 16.72 21.21 13.20 5.85 19.14 3.32 9.87 20.96 54.82 17 E2_Da NovelBoundary 0 0.00 3.29 0.00 0.00 0.00 4.43 0.00 2.55 12.99 0.00 2.42 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 2.97 11.76 37.56 18 E2a_E3b KnownJunction 0 0.00 0.00 3.67 3.53 0.00 2.78 0.00 0.00 9.06 0.00 2.47 6.45 0.00 2.18 0.00 4.02 21.69 0.00 13.55 0.00 0.00 12.74 0.00 19 E2a_E3c KnownJunction 0 6.82 0.00 0.00 0.00 0.00 2.27 1.81 6.08 2.92 0.00 2.05 0.00 12.01 4.77 4.57 0.00 12.53 0.00 0.00 0.00 5.87 0.00 0.00 20 E3_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 4.33 2.33 0.00 0.00 5.64 3.12 4.58 0.00 6.82 0.00 15.08 0.00 4.21 0.00 0.00 0.00 3.15 7.96 3.24 21 ER3a ExonRegion 0 0.24 0.81 0.01 0.50 0.01 0.98 0.62 1.09 5.58 1.33 0.52 0.25 4.57 1.75 4.07 0.42 2.69 0.00 2.05 3.37 2.04 1.94 5.65 22 E3_Ab KnownBoundary 0 2.89 2.70 0.00 1.43 0.00 0.00 2.25 0.00 8.01 4.41 0.00 6.30 6.82 2.65 4.94 0.00 3.93 0.00 8.47 0.00 0.00 2.27 16.39 23 ER3b ExonRegion 0 0.48 1.68 2.39 2.76 1.67 6.88 3.05 2.85 17.57 2.75 5.56 7.68 8.21 5.97 7.25 4.01 25.83 0.00 11.55 3.56 5.40 13.18 12.63 24 E3_Ac KnownBoundary 0 0.00 3.29 0.00 4.26 0.00 16.64 4.11 4.35 12.59 1.24 2.32 0.00 26.13 14.77 15.45 4.36 22.44 0.00 0.00 6.20 8.46 14.76 7.85 25 ER3c ExonRegion 0 0.81 1.58 7.37 5.53 2.86 17.33 2.42 6.29 19.41 3.14 5.52 8.42 29.93 13.76 30.32 9.82 20.58 4.75 11.70 8.94 11.27 18.07 23.72 26 E3a_E4a KnownJunction 0 0.00 0.00 9.02 10.26 3.74 24.08 0.00 5.01 40.19 6.58 5.05 6.30 27.27 7.95 29.92 31.19 21.97 15.21 11.39 8.76 5.56 38.88 53.69 27 ER4a ExonRegion 0 1.86 5.03 8.58 8.21 5.33 28.13 3.64 8.85 24.87 5.23 7.78 5.77 25.66 27.35 43.85 23.99 32.79 4.97 31.13 8.89 13.78 31.95 41.78 28 E4_Da KnownBoundary 0 2.96 3.35 6.95 3.60 4.07 13.40 2.16 0.00 11.37 1.32 0.00 0.00 0.00 17.48 22.50 0.00 8.79 0.00 14.97 5.37 5.31 8.02 4.35 29 E4a_E5a KnownJunction 0 0.00 3.35 3.08 0.00 0.00 8.52 8.21 9.94 13.66 0.00 7.63 0.00 33.11 4.59 32.51 15.12 23.00 0.00 0.00 6.07 11.18 8.45 16.90 30 ER4b ExonRegion 0 1.74 2.99 3.03 1.98 3.25 5.21 1.95 0.00 4.67 0.94 0.00 8.49 13.79 9.20 7.57 0.00 22.07 1.85 10.24 5.38 9.81 4.25 2.82 31 E4_Db NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.05 2.98 0.00 0.00 0.00 13.64 0.00 0.00 4.19 3.74 1.99 0.00 0.00 0.00 2.69 15.02 32 E4b_E5a KnownJunction 0 0.00 0.00 1.42 0.00 3.14 5.56 3.97 0.00 0.00 2.85 0.00 11.85 20.13 2.47 4.45 0.00 11.87 2.24 0.00 0.00 0.00 5.76 4.35 33 ER5a ExonRegion 0 8.95 6.81 9.56 2.95 2.94 16.09 7.12 8.59 18.86 1.03 5.04 11.67 20.34 17.42 38.25 14.41 31.97 7.55 13.26 10.22 22.30 28.67 19.12 34 E5_Da KnownBoundary 0 8.82 8.29 19.40 5.93 10.78 42.53 1.68 6.78 18.87 1.56 12.53 18.91 80.35 28.43 39.68 19.40 44.60 4.44 32.38 21.80 17.61 47.46 29.96 35 ER5b ExonRegion 0 10.41 6.26 12.49 7.82 6.42 27.59 3.11 7.94 14.96 0.64 6.70 9.40 40.13 26.61 52.42 18.04 33.27 3.95 29.32 12.43 16.50 32.08 20.22 36 E5_Db KnownBoundary 0 7.56 2.76 1.63 3.23 0.00 2.90 0.00 2.01 9.75 0.00 0.00 0.00 15.10 4.94 11.25 4.27 17.95 0.00 4.80 0.00 5.19 20.08 3.76 37 E5_Dc KnownBoundary 0 0.00 0.00 2.93 1.70 0.00 5.17 1.94 4.60 4.51 0.00 0.00 0.00 22.08 4.71 4.45 8.54 8.13 0.00 3.86 0.00 2.84 17.02 11.18 38 ER5c ExonRegion 0 4.23 2.03 14.70 6.81 0.00 21.39 1.32 8.64 20.59 0.00 3.87 8.66 45.34 14.62 54.16 14.86 23.11 1.85 11.68 0.71 11.02 40.28 14.68 39 ER5d ExonRegion 0 2.90 3.20 16.59 3.33 6.09 16.74 6.82 8.32 20.33 0.34 2.61 21.73 69.57 14.92 37.13 17.78 13.63 5.06 13.45 6.07 9.06 28.05 15.77 40 E5_Dd KnownBoundary 0 3.11 10.06 13.16 0.00 4.33 24.99 14.09 9.08 16.17 0.00 8.95 51.02 80.84 2.47 13.60 27.43 4.30 7.79 19.20 9.01 2.78 14.14 16.30 41 ER5e ExonRegion 0 0.72 9.42 14.87 5.77 4.86 25.77 13.48 8.64 17.84 1.15 8.39 53.78 55.42 13.63 24.20 13.37 4.86 6.56 12.74 7.95 6.15 19.46 13.52 42 E5_De KnownBoundary 0 0.00 9.47 9.25 10.89 3.06 41.68 16.65 4.85 14.96 1.42 2.47 61.37 46.26 24.55 34.98 3.42 9.54 2.57 7.81 8.63 5.25 29.09 11.10 43 ER5f ExonRegion 0 7.07 5.45 13.65 11.15 5.53 17.22 4.03 5.47 22.94 2.77 5.11 19.70 43.75 16.05 30.57 10.50 16.32 0.90 9.29 6.72 5.10 24.30 14.89 44 E5_Df NovelBoundary 0 3.78 2.89 17.21 10.92 3.48 26.23 13.69 10.60 26.33 12.25 0.00 25.96 39.77 22.43 18.05 0.00 17.48 1.87 14.31 6.52 11.18 6.18 15.71 45 E5f_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.19 0.00 46 Ix Intron 0 3.14 3.02 7.11 3.76 3.23 9.69 2.46 1.19 8.87 2.38 3.05 12.37 18.29 6.47 18.33 7.17 15.00 1.87 4.73 4.34 5.52 6.18 8.99 47 Ix_AR3 ActiveIntronRegion 0 4.53 4.35 11.42 5.68 4.84 12.37 4.14 1.69 14.53 4.22 5.09 21.95 28.50 11.03 29.21 10.76 24.44 2.57 8.38 6.30 9.06 9.94 14.98 48 E6_Aa NovelBoundary 0 3.78 0.00 3.55 5.53 20.80 23.05 0.00 2.22 16.38 2.85 0.00 0.00 15.10 2.47 5.19 6.75 0.00 0.00 0.00 0.00 0.00 0.00 4.01 49 ER6a ExonRegion 0 1.85 0.00 1.80 1.17 4.30 2.89 0.75 2.59 7.19 1.68 1.05 5.67 6.74 0.66 7.38 1.61 1.79 0.00 0.00 1.15 0.16 6.58 1.44 50 E6a_E7a KnownJunction 0 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 0.00 5.14 0.00 51 E7_Aa NovelBoundary 0 6.82 0.00 5.53 12.65 8.40 21.46 5.87 6.04 18.06 6.18 0.00 6.00 12.99 0.00 0.00 0.00 0.00 0.00 4.14 3.26 2.47 5.57 4.35 52 ER7a ExonRegion 0 13.25 4.43 11.41 10.36 8.89 19.16 4.85 9.71 22.50 5.35 2.20 5.23 11.37 3.98 15.09 10.16 7.36 2.91 4.26 6.00 3.39 10.57 11.51