Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC009264.1 Gene 0 1.36 3.01 0.21 0.39 0.78 0.18 0.70 0.00 5.41 2.06 0.00 0.07 0.45 0.07 0.20 0.06 0.32 0.47 0.00 1.28 0.13 0.20 0.17 2 439694 Transcript 0 0.47 0.50 0.47 0.56 0.16 0.12 0.29 0.00 1.39 0.67 0.00 0.02 0.09 0.07 0.01 0.15 0.54 0.48 0.00 0.48 0.13 0.24 0.32 3 425981 Transcript 0 0.12 3.45 0.18 0.11 0.00 0.10 0.83 0.00 1.18 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 2.56 0.00 0.12 0.00 4 IG10_SR4 SilentIntergenicRegion 0 1.38 0.85 2.18 0.00 5.43 7.56 4.83 1.52 7.97 2.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.89 0.00 10.67 5.99 5 IG10_AR6 ActiveIntergenicRegion 0 1.15 2.15 1.82 0.00 7.89 7.28 5.64 4.61 8.31 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 4.04 1.01 14.28 2.37 6 IG10_SR3 SilentIntergenicRegion 0 0.40 4.19 0.79 0.38 7.43 9.14 3.32 1.43 8.37 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 1.15 2.57 1.43 9.36 4.24 7 IG10_AR5 ActiveIntergenicRegion 0 1.54 2.91 3.37 0.37 10.74 9.63 5.35 5.52 7.61 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 1.20 3.69 0.62 12.24 4.28 8 ER1a ExonRegion 0 1.32 0.00 2.82 3.15 0.00 0.57 1.24 0.00 1.14 1.59 0.00 0.00 0.00 0.42 0.00 0.92 3.08 2.57 0.00 0.65 0.69 1.30 1.83 9 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E2_Aa NovelBoundary 0 53.05 908.79 7631.99 3579.43 2049.07 2203.62 1296.13 1711.68 1018.59 2234.19 2211.30 27.01 15.91 142.68 626.25 1153.46 1222.72 1839.78 1620.09 859.17 1461.78 617.42 644.15 11 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 12 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER3a ExonRegion 0 4.50 0.00 0.00 0.00 2.27 0.00 0.55 0.00 0.00 0.00 0.00 0.00 1.64 1.06 3.48 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 14 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.73 0.00 0.00 0.00 17 E4a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 Ix_AR4 ActiveIntronRegion 0 20.28 71.66 6.23 2.05 0.88 5.41 3.54 0.00 34.75 10.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.09 0.00 6.95 0.00 0.00 0.00 19 Ix_SR2 SilentIntronRegion 0 9.78 42.05 5.42 2.57 1.52 2.16 3.23 0.22 14.45 9.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 0.00 11.51 0.10 0.00 0.00 20 Ix_AR1 ActiveIntronRegion 0 16.87 29.71 0.49 1.08 1.42 1.95 1.76 0.00 8.80 7.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.85 0.00 4.52 0.00 0.00 0.00 21 Ix Intron 0 6.22 39.96 3.34 1.86 1.46 3.01 2.95 0.03 14.18 7.81 0.00 0.02 0.00 0.00 0.00 0.00 0.00 2.48 0.01 14.71 0.01 0.03 0.01 22 Ix_SR3 SilentIntronRegion 0 9.71 98.97 1.86 3.04 1.25 4.09 3.34 0.21 15.38 12.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.30 0.00 18.89 0.00 0.07 0.00 23 Ix_AR2 ActiveIntronRegion 0 7.68 62.44 3.81 2.98 2.59 7.94 5.64 0.00 17.76 10.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 16.05 0.00 0.00 0.00 24 Ix_SR2 SilentIntronRegion 0 7.12 39.07 4.18 2.09 1.76 3.20 3.24 0.01 17.95 8.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.77 0.02 16.06 0.02 0.03 0.01 25 E5_Aa NovelBoundary 0 0.00 10.98 0.00 0.00 0.00 2.33 4.15 0.00 5.24 17.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.23 0.00 15.53 0.00 0.00 0.00 26 ER5a ExonRegion 0 0.71 8.83 0.00 0.68 0.00 0.62 2.66 0.00 4.91 3.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 12.77 0.00 0.70 0.00 27 E5_Da NovelBoundary 0 0.00 13.68 0.00 0.00 0.00 7.78 1.81 0.00 4.69 13.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.39 0.00 0.00 0.00 28 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 ER6a ExonRegion 0 0.00 11.85 1.06 0.00 0.00 0.00 2.32 0.00 2.19 2.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.07 0.00 2.54 0.00 0.00 0.00 30 E6_Da NovelBoundary 0 3.11 37.43 1.33 0.00 4.33 2.90 2.25 0.00 15.57 9.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.94 0.00 2.63 0.00 31 Ix Intron 0 8.46 30.64 6.52 2.10 2.11 8.91 6.44 0.04 27.79 22.19 0.00 0.04 0.00 0.01 0.00 0.01 0.00 6.28 0.05 18.71 0.00 0.05 0.03 32 Ix_SR4 SilentIntronRegion 0 13.07 42.27 14.27 4.80 4.39 22.50 9.87 0.00 29.70 59.08 0.00 0.20 0.00 0.03 0.00 0.00 0.00 8.18 0.22 18.86 0.00 0.14 0.00 33 Ix_AR4 ActiveIntronRegion 0 9.35 18.67 3.12 2.12 0.58 6.01 11.01 0.00 26.35 13.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.60 0.00 14.34 0.00 0.00 0.00 34 Ix_SR3 SilentIntronRegion 0 14.43 64.50 11.81 3.76 2.79 10.04 5.70 0.00 51.50 24.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.11 0.06 17.69 0.00 0.00 0.10 35 Ix_AR2 ActiveIntronRegion 0 20.32 56.30 11.47 5.30 5.09 8.28 9.40 0.00 48.24 29.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.48 0.00 24.74 0.00 0.00 0.00 36 Ix_SR2 SilentIntronRegion 0 10.28 43.38 4.10 5.00 3.29 11.09 7.88 0.00 39.33 17.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.80 0.00 25.55 0.00 0.00 0.00 37 Ix_AR1 ActiveIntronRegion 0 7.64 35.34 5.97 1.65 2.54 8.40 8.18 0.62 47.88 23.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.59 0.00 25.57 0.00 0.00 0.00 38 Ix_SR1 SilentIntronRegion 0 5.35 17.28 3.13 0.63 1.17 4.96 5.17 0.04 20.08 11.24 0.00 0.02 0.00 0.00 0.00 0.03 0.00 4.09 0.00 19.00 0.00 0.04 0.03 39 ER7a ExonRegion 0 1.49 3.03 0.00 0.23 0.98 0.16 0.52 0.00 7.18 2.40 0.00 0.10 0.54 0.00 0.06 0.00 0.19 0.28 0.00 0.48 0.12 0.12 0.08