Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF783 Gene 0 40.99 60.98 57.87 66.24 28.81 59.44 23.73 32.52 42.24 25.41 36.70 12.93 12.48 39.38 46.20 39.30 35.37 40.57 43.40 44.82 37.82 26.92 32.00 2 434415 Transcript 0 41.87 76.78 61.82 70.40 34.89 84.98 26.38 36.26 38.42 25.83 35.34 10.10 16.71 49.96 64.83 43.29 60.78 52.96 49.66 51.84 33.74 26.40 42.48 3 378052 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 476295 Transcript 0 0.00 0.00 1.83 1.78 2.16 2.33 0.00 1.27 4.07 0.00 6.95 0.00 0.00 2.35 4.45 2.18 1.96 0.00 0.00 0.00 0.00 7.35 2.09 5 481519 Transcript 0 0.90 0.15 1.44 0.86 0.34 0.43 0.00 1.58 1.37 0.97 1.70 0.89 0.00 0.98 0.52 0.99 0.00 1.52 1.15 1.53 1.48 0.52 0.77 6 489518 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 ER1a ExonRegion 0 3.20 1.27 0.76 0.06 0.00 14.26 2.88 0.00 3.90 2.47 13.32 0.00 0.00 6.89 5.87 6.47 5.65 7.56 14.79 6.52 14.69 6.90 18.93 8 E1_Ab KnownBoundary 0 6.82 3.35 4.97 4.96 3.82 41.00 10.86 1.81 23.52 7.76 27.85 0.00 0.00 14.07 19.04 19.48 8.04 37.81 30.87 18.66 32.68 14.76 44.64 9 ER1b ExonRegion 0 4.93 3.88 7.55 2.23 2.66 29.66 5.77 2.06 13.89 10.74 12.66 1.28 0.00 13.84 13.79 20.53 11.32 9.94 10.36 17.02 24.15 6.82 20.35 10 E1a_E2a KnownJunction 0 3.33 12.89 14.37 3.36 3.65 37.36 0.00 4.19 29.22 13.30 23.74 0.00 0.00 21.60 0.00 8.46 4.49 3.44 0.00 18.09 38.36 8.70 15.96 11 I1 Intron 0 10.60 20.64 22.16 30.24 16.48 26.42 12.20 10.69 15.28 12.13 11.23 16.81 10.28 13.36 8.85 10.11 9.81 14.33 19.53 22.62 9.73 17.08 12.35 12 I1_AR1 ActiveIntronRegion 0 7.51 16.74 17.41 28.52 12.72 22.52 11.06 9.87 12.38 13.75 12.27 13.13 10.73 15.01 7.43 9.71 8.77 10.07 17.11 18.59 9.75 18.31 12.19 13 I1_SR1 SilentIntronRegion 0 13.40 24.20 26.47 31.85 19.91 29.98 13.25 11.45 17.92 10.70 10.33 20.16 9.90 11.89 10.15 10.49 10.78 18.19 21.75 26.30 9.74 16.00 12.51 14 ER2a ExonRegion 0 19.17 26.32 59.29 48.13 17.99 61.29 18.71 34.15 78.97 35.59 52.35 20.44 15.83 62.78 45.63 43.49 44.25 55.01 49.03 64.55 83.32 33.36 43.13 15 E2a_E3a KnownJunction 0 13.19 30.85 87.52 73.45 37.27 64.74 24.55 36.47 124.25 51.23 73.23 17.11 5.84 128.26 58.84 95.70 72.65 90.33 49.88 86.16 74.50 36.13 27.83 16 ER3a ExonRegion 0 17.15 29.57 89.89 90.17 21.76 84.99 26.12 53.42 130.36 55.99 72.08 17.18 18.10 88.19 54.60 68.05 65.13 92.74 90.85 76.78 109.77 40.69 48.14 17 E3a_E4a KnownJunction 0 24.82 25.32 68.83 101.85 36.84 125.44 23.05 74.59 128.15 54.53 96.18 0.00 49.35 77.05 57.85 39.14 63.86 119.14 75.77 91.15 130.29 60.99 58.90 18 ER4a ExonRegion 0 16.76 23.10 55.65 83.77 23.55 98.72 15.48 47.78 106.20 42.06 68.54 17.56 32.20 88.30 54.13 51.73 70.29 101.96 80.01 80.88 114.65 46.88 60.69 19 E4_Da NovelBoundary 0 3.56 5.99 4.79 18.41 8.06 0.00 3.89 4.85 9.90 3.87 0.00 0.00 0.00 0.00 20.15 7.26 9.54 9.82 4.71 17.39 20.39 2.45 4.18 20 E4a_E5b NovelJunction 0 7.11 6.31 43.82 51.48 0.00 16.69 4.28 36.80 56.91 17.68 10.06 7.35 0.00 2.88 0.00 4.19 4.58 39.46 18.35 49.60 23.97 17.82 0.00 21 E4a_E6a KnownJunction 0 9.04 5.92 32.97 41.92 11.88 60.08 15.72 20.04 54.28 26.89 25.43 25.21 6.49 31.84 63.91 59.30 42.64 56.67 60.90 35.73 52.76 42.01 39.27 22 E5_Aa NovelBoundary 0 6.82 2.43 8.43 3.40 0.00 14.14 1.77 9.65 9.90 5.43 2.53 6.00 0.00 2.41 4.45 4.10 26.55 18.41 12.05 14.64 6.18 17.21 18.35 23 E5_Ab NovelBoundary 0 0.00 3.03 6.06 12.72 0.00 26.86 5.52 3.70 2.63 2.85 0.00 0.00 0.00 0.00 0.00 3.93 0.00 7.46 12.89 9.20 3.15 0.00 10.67 24 ER5a ExonRegion 0 0.00 1.16 2.80 5.26 1.15 1.83 0.00 6.67 1.59 3.93 3.87 4.33 0.00 3.48 4.14 6.37 0.00 2.11 7.74 7.29 3.78 0.30 3.36 25 ER5b ExonRegion 0 7.22 13.51 40.49 54.34 27.75 36.38 9.28 26.23 68.07 24.39 45.44 6.89 8.61 44.60 35.55 30.29 22.03 58.57 62.46 54.02 55.09 30.17 45.41 26 E5_Da NovelBoundary 0 0.00 5.79 9.91 18.41 0.00 10.96 1.77 22.55 9.03 5.83 2.05 5.25 0.00 2.47 0.00 3.42 9.54 6.96 14.02 11.76 9.20 5.69 3.84 27 E5a_E6a KnownJunction 0 6.59 11.91 84.06 94.03 20.03 79.33 20.58 31.50 73.52 30.65 58.80 0.00 12.34 38.32 32.88 36.14 48.43 71.71 68.52 57.72 70.67 56.09 65.64 28 E6_Aa NovelBoundary 0 7.26 6.45 16.32 11.19 0.00 10.68 10.95 21.77 21.47 4.11 4.32 0.00 0.00 0.00 4.45 0.00 4.02 19.44 13.27 15.53 6.12 9.12 0.00 29 ER6a ExonRegion 0 17.64 29.87 89.60 78.10 37.23 109.80 24.99 53.10 110.79 47.92 57.63 19.10 14.94 71.84 66.57 67.16 69.86 110.13 88.13 82.17 116.81 44.30 64.92 30 E6_Da NovelBoundary 0 2.74 10.06 8.34 8.66 32.34 26.23 0.00 17.66 15.25 7.87 12.27 0.00 21.75 2.47 4.33 0.00 11.97 19.57 16.66 17.39 8.22 2.45 7.51 31 E6a_E7a KnownJunction 0 10.00 42.89 33.35 31.53 21.05 79.67 12.90 23.08 26.91 15.12 17.79 0.00 13.96 44.38 55.26 26.66 68.44 51.73 36.24 37.65 23.97 13.35 38.84 32 E6a_E8a KnownJunction 0 9.78 9.01 41.57 33.30 11.21 38.84 14.84 17.50 75.46 11.55 16.58 0.00 0.00 18.60 44.75 31.44 26.46 46.88 27.01 20.84 66.35 6.25 22.11 33 I6 Intron 0 2.82 8.03 13.04 16.39 4.92 10.25 4.55 9.60 14.21 6.14 5.19 1.84 2.64 4.07 10.80 8.70 9.74 15.24 14.21 13.12 9.04 4.02 11.72 34 I6_SR1 SilentIntronRegion 0 2.84 8.55 12.58 16.53 4.96 9.76 4.45 10.03 14.35 6.33 5.12 1.88 2.89 4.12 10.67 8.90 9.09 14.93 15.09 11.80 9.30 4.12 11.64 35 I6_AR1 ActiveIntronRegion 0 2.66 4.02 16.65 15.47 4.69 14.10 5.38 6.33 13.19 4.69 5.71 1.54 0.75 3.70 11.88 7.24 14.83 17.78 7.48 23.45 7.08 3.30 12.43 36 E7_Aa NovelBoundary 0 10.22 19.67 18.69 14.45 4.33 34.92 4.15 14.50 17.51 13.11 4.63 6.30 0.00 4.59 4.70 11.54 8.04 29.76 0.00 14.38 6.30 6.06 11.61 37 ER7a ExonRegion 0 73.73 110.66 90.30 109.26 48.74 90.29 39.87 49.44 49.93 36.54 52.90 20.20 19.45 55.55 74.40 59.91 53.12 54.18 63.08 66.03 43.51 39.44 46.12 38 ER8a ExonRegion 0 2.40 1.03 16.99 12.71 2.66 13.42 3.00 12.56 35.00 10.52 10.39 1.72 0.00 11.48 7.96 9.62 7.13 17.69 11.96 8.09 32.04 7.06 9.39 39 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 E8a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 Ix Intron 0 8.87 7.31 14.58 22.09 9.35 16.47 7.14 10.54 61.54 14.67 11.19 3.91 4.49 22.25 5.60 11.85 7.25 24.11 26.39 23.78 43.76 18.92 15.83 42 Ix_SR1 SilentIntronRegion 0 8.91 7.34 14.64 22.18 9.38 16.54 7.16 10.58 61.78 14.72 11.23 3.93 4.51 22.33 5.63 11.90 7.28 24.21 26.49 23.88 43.93 18.99 15.89 43 E9_Aa NovelBoundary 0 6.89 6.12 25.90 32.26 16.38 57.98 12.63 21.52 111.78 19.77 35.96 0.00 6.82 12.36 10.01 14.78 21.88 42.90 31.72 20.33 44.60 18.25 14.60 44 ER9a ExonRegion 0 4.47 0.00 1.19 0.00 0.00 0.00 0.00 1.24 3.03 0.87 2.01 2.81 0.00 0.80 0.00 0.00 0.00 2.13 0.00 0.21 0.37 0.00 0.00 45 E9_Da NovelBoundary 0 14.08 28.48 41.07 48.75 27.25 49.91 10.55 35.86 120.22 24.23 8.95 6.30 0.00 18.89 4.45 21.87 12.81 38.47 41.41 22.12 41.64 19.96 23.73 46 E9a_E10a KnownJunction 0 2.74 0.00 1.12 0.00 0.00 0.00 0.00 2.30 4.31 2.82 4.58 0.00 0.00 2.77 0.00 0.00 0.00 7.01 0.00 2.43 2.66 0.00 0.00 47 Ix Intron 0 1.20 5.76 2.07 4.60 6.07 12.47 4.50 4.38 6.26 2.91 3.29 0.00 0.00 10.94 4.84 10.11 11.22 6.78 5.42 2.41 13.76 5.90 11.65 48 Ix_AR1 ActiveIntronRegion 0 1.23 5.89 2.12 4.71 6.20 12.75 4.60 4.46 6.39 2.97 3.36 0.00 0.00 11.17 4.95 10.30 11.48 6.93 5.54 2.47 14.07 6.01 11.88 49 Ix Intron 0 5.79 3.04 19.08 16.67 5.33 19.62 3.95 10.25 29.76 3.83 11.06 0.89 1.92 17.52 7.26 7.39 6.57 25.81 25.36 18.53 38.91 13.48 17.53 50 Ix_AR1 ActiveIntronRegion 0 5.82 3.05 19.14 16.76 5.35 19.71 3.97 10.30 29.90 3.85 11.11 0.89 1.93 17.60 7.30 7.43 6.60 25.94 25.48 18.62 39.11 13.54 17.62 51 ER10a ExonRegion 0 1.09 0.89 1.67 1.73 1.99 1.31 0.16 0.75 3.28 1.91 1.44 0.21 0.00 1.37 0.69 0.79 0.00 3.90 2.55 2.04 3.08 0.41 2.50 52 E10_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 E10a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 ER10b ExonRegion 0 0.00 0.00 2.64 1.61 1.61 1.59 0.00 0.00 0.58 0.15 0.47 0.00 0.00 0.79 0.00 1.59 0.00 0.90 1.49 2.32 5.00 1.44 2.81 56 E10b_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 ER11a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 ER12a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 1.74 0.53 0.00 2.60 2.40 0.00 0.00 0.00 0.00 0.59 0.00 0.00 1.43 0.00 0.00 0.16 0.45 0.00 60 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 Ix Intron 0 3.94 3.78 10.20 7.40 6.28 6.98 3.32 4.17 9.39 7.47 3.44 1.22 0.69 7.34 4.27 4.58 3.48 8.48 9.80 6.37 11.41 7.76 6.42 62 Ix_SR1 SilentIntronRegion 0 3.52 3.94 10.97 7.07 7.05 6.35 3.58 4.19 8.94 7.91 3.55 1.25 0.93 7.10 4.57 5.18 4.10 8.81 8.61 5.89 10.51 7.64 6.82 63 Ix_AR1 ActiveIntronRegion 0 5.23 3.36 8.07 8.46 4.09 8.94 2.61 4.16 10.84 6.28 3.17 1.14 0.00 8.16 3.45 2.86 1.70 7.62 13.42 7.88 14.23 8.22 5.32 64 ER13a ExonRegion 0 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.68 3.28 1.28 2.74 0.00 0.00 1.04 0.41 1.35 0.00 2.95 0.00 0.97 1.87 2.33 0.00 65 E13_Da NovelBoundary 0 13.26 3.35 9.25 13.55 7.98 20.33 4.50 17.50 35.71 3.63 14.95 0.00 0.00 7.18 5.32 15.38 0.00 24.42 12.24 6.26 27.31 8.33 4.27 66 E13b_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67 ER13b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.73 4.94 1.15 1.93 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 2.08 0.00 68 ER14a ExonRegion 0 0.00 0.00 0.99 2.15 0.61 2.83 0.00 0.53 7.97 1.55 3.95 0.00 0.00 2.90 1.29 0.81 1.36 1.97 0.00 1.18 0.00 3.56 2.55 69 E14_Da KnownBoundary 0 21.78 27.76 23.03 24.04 7.39 64.62 8.44 18.11 33.85 12.52 7.42 0.00 0.00 24.19 17.80 4.36 19.07 35.48 23.44 14.19 34.90 14.94 11.69 70 E14a_E15a KnownJunction 0 0.00 0.00 3.67 3.56 4.33 4.66 0.00 2.55 8.13 0.00 13.90 0.00 0.00 4.71 8.90 4.36 3.93 0.00 0.00 0.00 0.00 14.70 4.18 71 ER14b ExonRegion 0 0.62 0.00 0.71 0.78 0.00 0.33 0.02 0.06 1.51 0.01 1.13 0.00 0.00 1.20 0.00 1.74 0.00 1.69 0.07 0.02 0.85 0.67 0.12 72 E14b_E15a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73 ER15a ExonRegion 0 3.98 0.00 17.34 13.71 4.30 33.51 3.17 8.38 23.02 2.75 16.28 0.00 0.00 21.41 6.68 8.92 5.60 12.60 18.44 16.31 24.31 13.89 13.35 74 E15_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 75 E15a_E15b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 76 ER15b ExonRegion 0 9.29 6.29 44.30 15.81 12.04 53.29 8.26 29.29 64.18 14.76 20.73 0.00 0.77 15.91 10.04 22.57 14.88 45.53 32.15 15.62 37.05 26.30 14.73 77 E15_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 78 ER15c ExonRegion 0 0.23 0.29 12.25 3.41 0.47 8.11 2.09 7.53 17.35 4.17 6.64 0.00 0.84 4.28 3.53 5.25 2.72 10.04 8.03 4.38 7.58 7.28 4.05 79 E15_Db KnownBoundary 0 3.04 5.92 12.09 9.39 4.33 7.55 4.06 16.43 31.19 1.16 0.00 0.00 0.00 3.00 4.94 7.35 0.00 21.27 0.00 0.00 0.00 2.88 3.93 80 E15b_E16a KnownJunction 0 0.00 0.00 3.73 0.00 0.00 0.00 0.00 2.42 1.42 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.39 0.00 81 ER15d ExonRegion 0 0.77 0.07 0.00 0.36 0.00 0.20 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 82 E15c_E16a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 83 E15_Dd NovelBoundary 0 0.00 2.63 17.59 20.61 0.00 38.50 1.81 19.88 34.72 10.34 13.16 7.80 0.00 2.06 0.00 8.46 8.13 12.15 3.67 11.12 11.61 6.00 7.68 84 ER15e ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 85 Ix Intron 0 33.45 24.36 72.86 77.09 32.56 114.44 19.22 50.79 127.54 32.62 30.44 5.87 3.73 33.09 23.90 26.98 19.59 55.01 41.11 33.11 59.41 29.97 29.39 86 Ix_AR1 ActiveIntronRegion 0 33.49 24.38 72.93 77.17 32.60 114.56 19.24 50.84 127.67 32.66 30.48 5.88 3.73 33.13 23.92 27.01 19.61 55.07 41.16 33.14 59.47 30.00 29.42 87 ER16a ExonRegion 0 0.43 0.00 1.56 0.00 0.00 0.00 0.00 0.83 0.09 0.00 0.16 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 88 ER16b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00