Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF786 Gene 0 24.50 23.48 61.02 37.42 47.34 43.97 36.85 47.30 58.96 43.77 25.74 15.81 16.75 40.51 33.25 40.82 35.61 46.65 38.07 39.03 17.03 15.65 22.29 2 316286 Transcript 0 11.73 14.97 10.86 10.20 21.57 22.70 19.62 9.36 13.29 9.62 6.63 10.19 9.57 10.58 10.84 10.64 12.03 15.43 18.08 12.41 6.39 3.03 9.42 3 491431 Transcript 0 3.78 3.35 10.70 3.30 0.00 7.38 5.79 5.42 16.29 7.76 4.32 13.65 0.00 0.00 4.45 3.59 0.00 10.57 12.52 5.43 9.14 0.00 4.35 4 451334 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 ER1a ExonRegion 0 12.81 10.19 5.36 3.13 13.79 40.08 19.13 6.80 8.60 7.81 10.61 5.50 0.00 14.93 10.97 9.22 10.28 19.97 19.60 3.00 4.15 3.66 14.61 6 E1_Ab KnownBoundary 0 29.56 22.96 19.54 12.82 74.96 149.86 79.32 23.91 26.27 22.16 38.33 24.91 0.00 50.86 17.80 41.10 37.49 74.53 77.08 21.03 14.39 15.37 45.67 7 ER1b ExonRegion 0 20.70 24.43 18.13 13.20 47.97 94.17 52.80 22.34 26.30 17.80 14.43 5.17 6.06 20.10 7.36 37.44 20.01 33.03 40.01 19.25 11.15 15.80 34.56 8 E1a_E3a KnownJunction 0 3.78 3.35 10.70 3.30 0.00 7.38 5.79 5.42 16.29 7.76 4.32 13.65 0.00 0.00 4.45 3.59 0.00 10.57 12.52 5.43 9.14 0.00 4.35 9 E1a_E4a KnownJunction 0 3.48 5.85 6.24 6.06 7.89 0.00 1.68 4.03 6.68 4.54 2.47 6.30 7.95 2.47 0.00 3.67 4.77 6.09 9.13 3.26 5.00 0.00 0.00 10 I1_SR2 SilentIntronRegion 0 11.43 8.54 26.29 10.05 17.25 13.48 18.66 13.52 16.56 6.67 4.35 9.24 15.39 9.56 6.20 11.59 5.45 7.99 5.26 6.06 0.99 5.31 4.85 11 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 I2 Intron 0 19.42 6.38 22.69 12.03 30.46 14.06 28.91 23.34 22.23 10.92 4.72 12.19 13.59 10.49 9.91 16.92 19.17 6.62 9.25 8.65 3.07 8.47 6.48 13 I2_SR1 SilentIntronRegion 0 19.47 6.39 22.74 12.06 30.53 14.09 28.98 23.39 22.28 10.95 4.73 12.22 13.62 10.51 9.94 16.95 19.22 6.64 9.27 8.67 3.07 8.48 6.50 14 E3_Aa NovelBoundary 0 56.38 11.91 55.02 19.31 37.69 13.06 42.71 29.82 41.96 14.99 12.16 12.60 19.15 7.95 30.90 22.73 37.21 9.04 13.08 17.51 2.72 2.45 3.41 15 ER3a ExonRegion 0 16.92 16.51 41.53 24.35 46.86 35.61 30.62 28.93 45.36 30.64 16.56 29.79 19.54 25.53 23.53 30.35 42.47 30.51 37.42 26.75 13.88 11.16 11.01 16 E3_Da NovelBoundary 0 3.26 0.00 20.16 10.22 14.60 11.02 6.23 6.20 6.97 0.00 4.16 12.00 6.82 2.88 18.05 3.93 3.83 6.14 16.94 6.14 3.15 0.00 3.76 17 E3a_E4a KnownJunction 0 17.04 15.52 53.69 31.46 58.06 46.68 8.04 56.23 84.61 42.01 16.21 18.61 38.80 23.37 15.08 38.71 35.62 72.00 60.43 34.13 11.61 17.27 16.39 18 E4_Aa NovelBoundary 0 0.00 0.00 30.40 17.35 3.23 16.98 8.88 0.00 9.61 3.57 5.05 6.30 0.00 2.41 0.00 12.13 0.00 1.66 0.00 17.83 0.00 0.00 3.67 19 ER4a ExonRegion 0 24.91 19.63 81.74 47.59 44.88 57.33 46.75 66.33 98.44 58.28 44.34 36.67 40.95 47.87 35.12 71.06 68.11 62.36 75.35 62.65 15.99 27.26 38.23 20 E4_Da NovelBoundary 0 3.78 3.03 12.83 7.16 7.64 5.68 4.50 1.56 7.49 2.90 4.84 5.55 0.00 2.06 10.75 16.41 0.00 2.57 25.88 28.95 0.00 2.51 0.00 21 E4a_E5a KnownJunction 0 23.63 26.71 65.52 51.34 31.24 90.74 46.94 74.14 106.77 71.32 36.54 56.87 33.44 38.91 31.77 72.63 60.87 45.56 55.72 63.15 14.64 17.45 24.41 22 ER5a ExonRegion 0 26.23 23.98 69.20 41.52 49.09 44.36 36.47 53.11 64.51 49.14 28.49 14.28 15.70 45.93 36.93 43.67 36.71 51.48 38.21 41.33 18.88 16.95 23.03 23 E5_Da KnownBoundary 0 12.22 14.87 35.54 25.20 31.83 26.92 27.29 30.56 31.48 35.70 6.84 6.30 0.00 0.00 0.00 15.89 8.04 3.44 3.48 5.31 0.00 2.82 0.00 24 E5_Db KnownBoundary 0 13.71 9.01 23.51 16.02 127.76 21.41 94.33 20.82 26.01 18.53 0.00 0.00 0.00 0.00 4.45 0.00 8.60 7.13 22.12 13.93 3.15 2.76 0.00 25 ER5b ExonRegion 0 14.65 15.02 47.60 33.34 98.59 28.64 73.94 43.48 44.08 38.55 4.46 4.33 0.00 0.75 6.47 10.97 9.14 9.24 17.15 13.09 2.20 2.08 0.00 26 ER5c ExonRegion 0 18.91 28.86 20.98 21.41 43.02 28.01 38.05 17.26 24.58 16.50 6.81 18.78 20.75 14.34 21.56 19.01 21.04 20.23 25.49 30.97 10.02 5.44 13.66 27 IG30 Intergenic 0 4.35 11.28 13.51 10.75 18.16 7.03 11.62 17.84 17.67 9.91 1.61 5.03 1.81 4.00 3.13 4.11 2.33 6.32 8.56 8.19 0.66 1.15 1.57 28 IG30_SR1 SilentIntergenicRegion 0 4.36 11.29 13.53 10.77 18.18 7.04 11.64 17.87 17.69 9.92 1.61 5.04 1.81 4.00 3.14 4.11 2.34 6.33 8.57 8.20 0.66 1.15 1.57