Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF282 Gene 0 32.54 63.66 185.02 96.04 45.71 80.19 46.10 79.92 109.65 94.09 115.60 23.34 24.53 123.19 112.93 99.22 86.57 110.20 117.77 64.07 73.10 55.58 56.42 2 430197 Transcript 0 0.00 0.00 0.20 0.00 0.00 4.78 0.22 2.59 0.59 0.60 4.47 0.00 0.00 1.52 3.63 6.87 2.68 0.00 0.53 0.00 0.00 0.00 1.65 3 262085 Transcript 0 59.48 102.35 256.84 142.63 67.91 100.06 65.36 114.75 145.65 119.95 127.76 21.43 21.68 143.51 137.46 120.80 94.11 126.81 130.40 77.40 82.80 70.10 62.96 4 479907 Transcript 0 3.78 0.00 2.45 0.00 0.00 2.90 0.00 0.00 1.79 0.00 1.95 0.00 0.00 0.00 4.45 0.00 0.00 2.40 0.00 5.75 0.00 0.00 0.00 5 462740 Transcript 0 9.99 4.87 7.31 5.09 4.47 3.52 4.10 5.67 8.59 4.06 5.36 5.54 14.76 11.98 8.42 15.93 4.44 8.72 17.60 7.05 7.98 8.71 5.39 6 470381 Transcript 0 6.39 5.26 15.06 12.13 11.96 5.03 10.83 4.51 8.72 6.14 12.92 18.25 4.87 22.42 8.31 12.82 6.47 13.12 13.12 7.63 16.33 8.05 6.56 7 ER1a ExonRegion 0 0.00 0.00 0.41 0.00 0.00 9.55 0.44 5.19 1.18 1.19 8.94 0.00 0.00 3.05 7.25 13.75 5.36 0.00 1.06 0.00 0.00 0.00 3.30 8 ER1b ExonRegion 1 7.23 3.88 8.45 4.82 18.61 64.75 11.04 15.24 11.69 13.46 67.95 0.00 0.00 42.40 71.95 81.66 45.70 10.35 13.13 9.53 10.65 13.98 25.53 9 E1_Ac KnownBoundary 1 24.15 18.88 22.89 12.49 46.77 119.14 31.40 13.47 29.63 28.80 121.87 0.00 0.00 27.90 66.01 96.13 58.44 34.86 26.45 28.32 16.68 23.64 74.35 10 ER1c ExonRegion 1 9.88 26.05 71.39 34.89 24.11 62.23 30.50 40.30 42.45 59.90 96.23 4.94 4.94 56.23 67.10 80.57 75.61 106.55 140.00 48.94 61.76 33.96 59.55 11 E1a_E2a KnownJunction 0 0.00 8.35 146.74 65.23 24.28 7.84 4.50 84.16 90.13 111.69 143.72 16.81 40.42 69.93 60.94 144.32 115.38 106.66 51.95 103.74 132.88 37.23 69.74 12 ER2a ExonRegion 0 12.25 41.83 134.85 56.43 33.13 82.11 37.59 57.32 103.22 86.86 119.15 22.25 29.54 137.20 120.82 102.72 92.98 127.02 153.70 74.17 77.93 46.92 63.35 13 E2a_E3b KnownJunction 0 17.93 70.12 177.79 95.99 20.29 51.39 24.60 65.02 141.14 114.89 146.25 37.36 52.59 213.61 238.21 165.17 76.30 108.77 126.12 67.50 73.33 79.36 103.63 14 I2_SR1 SilentIntronRegion 0 3.62 4.71 4.46 9.42 7.84 4.70 3.72 9.74 11.68 7.72 9.43 7.71 11.88 6.83 6.54 14.51 17.72 18.04 15.93 16.87 12.64 3.05 8.96 15 I2_AR1 ActiveIntronRegion 0 5.47 12.45 13.66 13.53 10.92 4.99 12.42 9.82 14.02 3.95 5.52 14.96 10.43 5.20 5.76 11.32 11.22 12.00 15.16 8.39 12.28 5.67 9.19 16 E3_Aa NovelBoundary 0 3.48 20.19 11.41 7.89 15.03 7.95 6.05 18.48 16.64 5.78 2.53 5.70 13.15 7.30 0.00 4.36 26.55 7.92 8.85 20.07 30.15 0.00 12.21 17 ER3a ExonRegion 0 9.99 4.87 7.31 5.09 4.47 3.52 4.10 5.67 8.59 4.06 5.36 5.54 14.76 11.98 8.42 15.93 4.44 8.72 17.60 7.05 7.98 8.71 5.39 18 E3_Ab KnownBoundary 0 14.52 20.46 12.00 16.65 15.62 5.05 0.00 16.47 19.70 5.59 5.00 5.85 0.00 7.24 10.14 29.14 0.00 20.89 37.08 15.53 11.55 17.15 7.77 19 ER3b ExonRegion 0 34.79 105.31 239.39 111.73 87.98 132.40 76.66 113.75 158.57 139.61 216.53 59.75 67.30 205.03 149.97 156.65 139.63 175.67 178.18 84.45 133.55 79.01 95.58 20 E3a_E4a KnownJunction 0 44.60 127.74 293.81 93.49 87.10 141.00 107.27 115.50 125.92 130.41 185.73 71.57 54.38 201.90 139.69 138.60 121.65 172.32 153.51 77.60 114.47 91.05 73.07 21 ER4a ExonRegion 0 34.33 92.58 284.90 112.02 60.80 161.22 73.81 107.40 155.11 156.23 180.24 84.79 69.57 197.87 159.97 170.48 119.57 190.01 121.66 90.43 99.35 85.66 68.28 22 E4_Da KnownBoundary 0 34.75 74.79 188.34 67.69 52.46 166.38 46.64 68.51 130.96 122.54 123.87 79.08 61.20 151.69 137.34 153.21 89.57 144.01 105.79 68.39 57.02 80.15 62.66 23 E4_Db KnownBoundary 0 39.78 92.48 212.62 134.35 48.47 141.57 85.37 77.22 124.16 117.36 172.83 85.53 109.73 161.22 221.15 170.98 156.15 132.49 165.65 107.44 89.02 67.66 115.07 24 E4b_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER4b ExonRegion 0 35.98 84.01 285.66 140.29 48.67 187.28 72.57 108.68 170.91 177.56 198.36 103.64 92.04 228.70 254.58 200.06 164.01 190.90 166.04 108.91 104.81 91.67 104.25 26 ER4c ExonRegion 0 26.18 90.91 270.25 142.08 63.27 131.36 71.51 118.93 160.93 155.37 193.94 58.19 75.11 218.61 215.72 185.93 169.70 176.27 189.39 88.23 126.00 93.61 99.24 27 E4c_E5a KnownJunction 0 9.26 116.95 280.80 130.79 82.60 140.83 80.51 144.13 151.33 147.34 160.62 30.61 65.90 204.60 147.97 116.98 135.30 185.75 200.57 105.91 119.04 125.16 65.81 28 I4_AR2 ActiveIntronRegion 0 4.89 4.60 9.09 11.36 8.22 5.85 8.77 6.92 7.69 8.18 6.19 4.91 8.70 7.14 8.15 12.55 7.42 10.69 23.39 9.08 5.63 5.06 11.33 29 ER5a ExonRegion 0 10.60 51.64 258.66 126.18 53.60 113.62 58.93 109.05 141.19 140.86 154.04 57.44 54.33 184.39 159.25 123.57 122.52 151.24 169.75 92.41 99.31 104.28 77.23 30 E5_Da NovelBoundary 0 0.00 6.51 10.88 7.13 0.00 36.12 12.10 8.58 12.50 5.80 7.53 0.00 0.00 14.19 4.45 16.15 18.05 21.43 17.60 24.86 8.28 3.12 4.35 31 E5a_E6b KnownJunction 0 7.56 40.98 252.42 183.16 29.20 101.08 49.90 120.63 171.82 147.98 107.03 57.17 44.15 198.36 121.52 126.04 130.90 144.76 106.64 103.74 73.33 81.13 92.02 32 I5 Intron 0 7.63 15.92 11.35 13.20 22.09 11.57 13.38 16.62 19.29 12.73 13.65 19.22 18.32 13.02 9.51 13.54 12.06 11.60 22.98 14.94 9.83 9.29 7.38 33 I5_SR1 SilentIntronRegion 0 7.77 16.22 11.33 13.36 22.28 11.76 13.62 17.05 19.71 12.98 13.74 19.68 18.55 13.23 9.54 13.59 12.29 11.80 23.29 15.17 10.09 9.46 7.41 34 E6_Aa NovelBoundary 1 11.34 29.07 44.68 44.65 48.05 15.90 17.00 34.09 50.55 23.24 25.11 6.30 50.97 19.60 25.34 12.39 51.24 21.06 38.59 30.10 11.06 33.19 4.10 35 ER6a ExonRegion 0 6.39 5.26 15.06 12.13 11.96 5.03 10.83 4.51 8.72 6.14 12.92 18.25 4.87 22.42 8.31 12.82 6.47 13.12 13.12 7.63 16.33 8.05 6.56 36 E6_Ab KnownBoundary 0 13.34 18.15 31.64 22.61 11.88 4.71 19.34 14.29 18.63 13.19 23.43 36.16 5.68 47.62 0.00 18.88 4.68 30.80 12.42 14.76 16.06 15.25 11.18 37 ER6b ExonRegion 0 28.60 92.99 338.00 188.54 68.62 121.32 64.96 154.02 221.98 156.63 229.48 71.49 72.30 229.25 199.65 190.40 149.39 219.42 304.36 103.67 137.53 138.93 119.28 38 E6a_E7a KnownJunction 0 28.15 78.01 276.81 137.08 87.44 80.69 56.35 105.68 185.88 142.48 265.07 88.53 78.08 120.25 129.80 125.78 122.58 125.27 156.80 90.25 168.90 89.52 57.36 39 ER7a ExonRegion 0 28.44 64.61 177.06 101.07 52.46 69.91 48.10 76.98 122.40 80.49 142.51 59.32 42.37 110.41 70.78 78.68 96.51 99.84 129.23 51.25 93.10 61.06 51.93 40 E7a_E8a KnownJunction 0 97.50 120.90 228.11 139.74 75.13 164.39 91.15 115.95 159.52 100.73 212.32 24.16 33.76 159.75 137.71 155.26 124.92 190.40 274.08 94.60 114.54 80.40 103.46 41 E8_Aa NovelBoundary 0 17.56 9.60 1.80 1.93 0.00 2.78 23.27 2.55 1.65 4.22 2.53 0.00 0.00 0.00 4.45 4.19 9.16 0.00 0.00 6.46 0.00 6.25 8.71 42 ER8a ExonRegion 0 11.78 18.20 37.24 17.65 9.07 23.45 10.75 16.87 25.22 18.65 38.19 8.61 11.95 35.00 37.38 27.70 31.55 25.19 38.74 16.77 32.05 21.70 19.21 43 E8_Da KnownBoundary 0 0.00 3.35 20.55 1.23 4.33 7.04 2.25 10.60 7.58 6.37 9.00 0.00 0.00 21.66 10.51 8.46 21.51 21.93 17.22 3.20 14.64 0.00 0.00 44 E8a_E8c KnownJunction 0 3.78 0.00 2.45 0.00 0.00 2.90 0.00 0.00 1.79 0.00 1.95 0.00 0.00 0.00 4.45 0.00 0.00 2.40 0.00 5.75 0.00 0.00 0.00 45 ER8b ExonRegion 0 1.44 2.41 15.89 3.41 1.32 5.59 2.23 4.03 3.67 4.52 12.41 1.35 4.03 21.24 21.06 12.60 10.90 9.33 8.86 6.96 12.36 2.46 5.48 46 E8_Ab KnownBoundary 1 10.08 12.63 103.28 39.26 4.24 32.03 11.53 34.05 25.78 34.36 39.64 0.00 13.31 90.06 18.54 89.98 60.59 67.07 52.99 55.86 49.67 17.33 30.90 47 ER8c ExonRegion 0 8.27 16.36 110.23 49.85 9.28 40.76 14.22 39.10 54.12 59.69 87.65 13.32 16.27 84.16 62.99 47.24 56.87 73.60 61.92 40.91 53.82 20.08 39.56 48 E8_Ac KnownBoundary 1 6.37 5.72 90.65 55.74 8.66 60.70 16.87 32.33 54.86 49.35 92.29 20.71 13.64 69.46 61.44 25.21 79.38 53.14 52.90 21.35 68.82 16.66 33.29 49 E8_Db KnownBoundary 0 7.48 9.08 83.65 32.00 4.33 26.06 16.87 43.66 52.78 63.47 84.23 18.91 15.26 78.58 60.33 21.96 45.07 46.88 62.97 39.56 62.09 21.19 16.99 50 ER8d ExonRegion 1 6.82 8.13 111.44 50.28 7.14 46.97 16.92 48.59 60.38 74.99 108.78 19.00 11.99 91.58 79.62 27.74 71.34 67.44 63.53 41.25 78.48 24.42 36.38 51 ER8e ExonRegion 0 9.47 16.12 157.90 67.69 16.01 49.65 22.28 45.82 84.49 83.39 101.47 8.98 11.10 110.66 96.16 66.07 89.83 91.24 66.52 60.59 54.28 31.85 43.66 52 E8_Dc KnownBoundary 1 14.89 5.39 58.45 20.44 28.44 46.62 10.42 16.47 41.17 33.79 40.64 0.00 5.84 88.53 31.15 41.44 35.34 36.60 12.99 25.18 41.89 20.94 17.24 53 E8_Dd KnownBoundary 1 11.34 22.63 76.19 21.11 8.66 58.60 21.55 23.37 51.27 41.05 94.29 0.00 0.00 78.29 78.87 55.88 30.67 105.00 40.47 37.97 31.69 12.12 48.40 54 ER8f ExonRegion 1 16.01 15.89 82.87 24.02 25.25 63.61 18.29 15.56 51.41 48.60 89.76 0.00 7.04 115.41 73.80 62.97 45.80 88.46 32.25 38.43 48.76 23.70 36.52 55 ER8g ExonRegion 0 59.48 102.35 256.84 142.63 67.91 100.06 65.36 114.75 145.65 119.95 127.76 21.43 21.68 143.51 137.46 120.80 94.11 126.81 130.40 77.40 82.80 70.10 62.96