Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 COPG2 Gene 0 46.75 75.13 125.38 122.30 237.25 228.45 167.79 156.99 302.98 108.28 75.69 31.32 36.60 86.43 35.02 43.88 52.50 87.47 218.40 72.03 82.95 29.54 41.71 2 330992 Transcript 1 41.80 128.04 32.58 34.75 69.76 200.24 73.22 67.50 100.79 68.92 77.52 3.25 8.46 77.64 25.49 87.68 93.49 73.75 174.68 106.34 88.46 31.03 94.13 3 445977 Transcript 0 0.00 1.53 0.00 0.00 6.02 1.38 0.00 1.30 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 3.30 0.00 2.39 0.00 0.00 0.00 0.00 4 354969 Transcript 0 2.12 0.00 5.21 7.16 8.70 6.88 3.97 6.05 9.88 6.31 5.80 1.08 5.86 6.50 2.90 7.43 4.95 5.08 18.32 2.66 1.10 0.52 5.87 5 425248 Transcript 0 98.32 10.73 7.45 12.40 71.23 111.23 144.19 48.31 38.98 10.10 0.00 0.22 0.00 0.43 1.54 0.00 0.00 8.33 133.91 2.88 7.25 0.00 0.00 6 490070 Transcript 0 29.44 18.66 109.63 109.58 189.60 212.24 173.95 177.76 380.23 66.33 7.50 4.21 7.57 11.17 4.54 3.41 6.27 26.39 153.71 5.79 13.73 6.67 2.32 7 ER1a ExonRegion 1 41.80 128.04 32.58 34.75 69.76 200.24 73.22 67.50 100.79 68.92 77.52 3.25 8.46 77.64 25.49 87.68 93.49 73.75 174.68 106.34 88.46 31.03 94.13 8 E1_Ab KnownBoundary 1 86.61 277.12 74.95 86.20 194.65 435.43 174.05 150.70 241.64 156.66 179.62 18.01 56.17 109.95 26.58 155.86 151.85 165.73 420.34 195.14 201.27 44.15 178.66 9 ER1b ExonRegion 1 23.46 95.80 47.28 58.15 81.54 176.81 64.43 95.26 167.70 101.60 69.75 5.05 17.33 28.83 6.45 53.00 51.26 107.63 162.90 68.20 88.21 17.42 61.59 10 E1a_E2a KnownJunction 1 6.45 14.93 30.16 34.96 41.94 25.38 17.44 44.15 112.27 63.05 4.69 12.45 39.61 9.89 4.45 0.00 0.00 65.50 20.71 5.43 19.58 2.69 0.00 11 ER2a ExonRegion 0 3.35 7.83 19.33 18.62 29.58 24.81 11.49 26.25 68.07 35.88 32.75 4.41 24.07 15.35 3.61 9.20 29.02 27.02 24.46 24.05 47.82 12.66 1.88 12 E2a_E3a KnownJunction 1 7.48 3.35 22.53 19.08 19.69 65.87 5.74 44.73 87.67 56.36 104.29 6.30 26.30 24.96 8.90 12.39 77.98 18.41 37.84 64.36 102.49 32.15 8.02 13 ER3a ExonRegion 1 12.99 23.00 59.97 53.24 21.87 32.94 32.00 125.73 182.49 112.54 165.08 26.14 33.76 114.03 36.64 62.01 113.33 91.32 212.99 154.64 146.86 52.60 87.95 14 E3a_E4a KnownJunction 1 10.45 44.01 80.96 96.39 20.12 24.08 24.95 138.79 256.57 125.66 92.13 38.86 32.79 152.22 89.99 157.39 28.99 177.67 461.94 195.33 68.39 70.85 167.48 15 ER4a ExonRegion 0 8.64 47.65 66.53 72.86 97.52 102.31 35.88 111.97 203.19 95.03 102.09 26.10 36.28 93.43 40.58 82.93 59.83 166.84 236.78 134.43 100.33 41.44 79.09 16 E4a_E5a KnownJunction 1 9.19 61.44 46.39 62.23 285.31 286.71 87.49 96.93 154.40 97.70 91.08 25.06 53.89 90.35 36.96 21.28 69.00 122.87 148.05 136.34 104.53 37.78 32.52 17 ER5a ExonRegion 0 17.33 95.81 49.77 65.49 184.29 269.16 114.19 102.45 156.63 100.02 130.66 64.89 45.20 96.53 19.95 37.30 75.51 101.35 147.52 115.03 116.00 46.20 33.33 18 E5a_E6a KnownJunction 1 34.38 191.02 66.32 72.85 101.95 253.38 108.24 153.21 242.21 122.52 145.25 86.58 50.65 128.20 13.35 36.74 95.65 140.90 264.01 148.48 116.14 49.60 30.56 19 ER6a ExonRegion 0 42.53 167.37 61.49 69.79 114.04 163.79 67.37 115.31 202.49 119.50 141.03 83.63 58.69 150.21 46.80 48.49 86.00 162.60 226.58 115.90 187.17 55.32 56.53 20 E6a_E7a KnownJunction 0 26.60 137.21 51.39 92.16 111.29 93.92 76.58 95.33 200.20 104.30 127.72 50.72 33.28 150.98 45.74 41.61 103.32 167.60 148.99 116.01 184.22 46.84 44.39 21 ER7a ExonRegion 0 24.24 97.96 59.19 81.57 106.60 105.57 83.44 118.37 216.64 120.98 149.02 64.71 70.30 143.62 29.89 59.54 94.80 156.92 252.50 146.85 170.51 57.67 65.36 22 E7a_E8a KnownJunction 0 19.41 124.65 74.89 94.06 146.60 142.70 158.28 121.25 227.23 149.38 132.93 124.39 91.39 155.51 31.89 72.89 86.86 132.03 315.68 133.78 198.43 50.40 66.24 23 ER8a ExonRegion 0 25.08 110.23 81.97 108.55 152.06 127.54 107.74 117.36 222.62 137.46 158.39 90.37 84.04 159.59 34.98 78.68 100.39 163.35 266.00 128.17 187.34 52.26 75.41 24 E8a_E9a KnownJunction 0 34.90 151.55 117.44 133.15 177.84 186.71 128.87 137.11 266.61 157.81 178.89 73.07 108.92 162.11 40.67 77.67 128.56 140.82 257.80 136.46 147.52 47.27 89.38 25 ER9a ExonRegion 0 22.18 92.31 68.32 102.91 145.64 171.44 85.21 108.90 180.85 110.11 140.10 100.76 80.95 130.89 29.07 75.39 89.15 94.93 245.66 123.26 99.92 56.26 70.98 26 ER9b ExonRegion 0 0.00 1.53 0.00 0.00 6.02 1.38 0.00 1.30 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 3.30 0.00 2.39 0.00 0.00 0.00 0.00 27 I9 Intron 0 16.83 9.54 115.03 79.89 100.10 115.41 116.63 102.85 250.94 40.08 2.31 2.82 6.68 2.14 1.47 3.99 2.86 9.45 64.95 6.67 5.49 2.97 3.92 28 I9_AR1 ActiveIntronRegion 0 27.66 10.55 213.74 146.12 158.92 218.74 197.22 186.61 485.78 80.18 3.16 3.95 17.15 2.46 2.17 6.45 7.69 14.23 102.27 10.53 8.05 4.36 4.94 29 I9_SR2 SilentIntronRegion 0 27.60 19.24 252.79 161.58 147.73 147.67 172.02 179.70 433.57 70.17 3.11 6.46 10.76 4.25 2.37 6.28 4.40 14.32 99.76 9.81 10.10 4.23 5.35 30 I9_AR3 ActiveIntronRegion 0 28.53 15.57 177.67 128.01 184.49 210.16 207.47 173.01 418.63 65.70 4.32 4.18 10.22 3.33 2.00 6.59 4.05 16.48 111.77 10.56 8.19 5.84 7.31 31 I9_AR4 ActiveIntronRegion 0 17.70 9.35 64.38 48.39 76.06 117.80 113.82 82.55 217.24 30.25 2.69 0.00 2.81 4.59 2.57 5.80 2.30 13.58 97.63 5.63 11.66 0.87 3.27 32 E10_Aa NovelBoundary 0 0.00 11.97 42.25 31.30 29.63 74.28 55.12 62.23 157.09 20.28 2.21 0.00 0.00 0.00 0.00 0.00 0.00 20.10 40.19 0.00 0.00 0.00 0.00 33 E10_Ab NovelBoundary 0 10.67 0.00 61.74 51.54 50.17 72.06 64.74 76.19 140.25 13.54 0.00 0.00 0.00 2.47 6.30 0.00 0.00 10.20 52.90 0.00 3.15 0.00 0.00 34 ER10a ExonRegion 0 2.12 0.00 5.21 7.16 8.70 6.88 3.97 6.05 9.88 6.31 5.80 1.08 5.86 6.50 2.90 7.43 4.95 5.08 18.32 2.66 1.10 0.52 5.87 35 ER10b ExonRegion 0 36.88 74.70 132.43 125.50 205.26 217.71 157.17 127.80 204.25 97.36 74.09 32.58 52.75 119.97 68.28 48.47 45.97 99.00 225.11 66.99 86.88 29.26 39.57 36 E10_Da NovelBoundary 0 38.45 21.71 114.60 119.63 146.69 238.50 259.50 177.69 470.92 76.77 0.00 0.00 7.63 4.59 0.00 0.00 8.70 34.66 135.72 12.66 5.99 3.12 7.85 37 E10a_E11b KnownJunction 0 60.46 98.27 192.69 148.20 197.03 232.65 86.69 129.67 161.31 120.15 101.13 25.21 46.91 145.51 70.46 48.02 70.03 184.18 269.09 66.99 90.50 25.47 30.65 38 I10 Intron 0 15.95 11.09 55.64 55.67 115.00 117.67 127.43 89.23 223.49 40.30 2.79 2.86 4.96 6.01 2.90 0.95 2.12 15.01 76.99 5.46 5.65 3.34 2.83 39 I10_AR1 ActiveIntronRegion 0 16.00 11.12 55.82 55.83 115.35 118.03 127.83 89.50 224.18 40.43 2.80 2.87 4.97 6.03 2.91 0.96 2.12 15.06 77.22 5.48 5.67 3.35 2.83 40 E11_Aa NovelBoundary 0 16.08 6.38 15.37 9.42 94.91 49.86 103.65 23.62 39.64 10.93 0.00 0.00 6.82 0.00 0.00 0.00 0.00 3.69 16.57 2.49 0.00 2.45 0.00 41 ER11a ExonRegion 0 29.44 18.66 109.63 109.58 189.60 212.24 173.95 177.76 380.23 66.33 7.50 4.21 7.57 11.17 4.54 3.41 6.27 26.39 153.71 5.79 13.73 6.67 2.32 42 E11_Ab KnownBoundary 0 45.93 21.77 112.41 120.70 199.75 235.38 172.68 207.96 429.19 62.99 7.53 6.00 0.00 9.77 5.07 12.56 17.39 30.39 211.86 16.04 18.22 5.69 0.00 43 ER11b ExonRegion 0 91.87 113.08 276.29 244.30 347.60 379.76 247.20 252.65 487.88 177.99 96.88 41.88 37.86 147.54 100.16 68.83 73.84 145.03 359.35 98.15 130.07 31.89 55.03 44 E11_Da NovelBoundary 0 34.60 25.59 57.51 102.82 137.27 189.15 190.87 166.92 402.25 64.68 2.21 0.00 0.00 0.00 0.00 14.87 4.11 20.69 134.69 0.00 3.15 0.00 0.00 45 E11a_E12a KnownJunction 0 99.05 132.48 194.26 249.15 225.30 161.78 118.71 155.71 186.43 126.14 75.44 11.70 20.13 128.26 62.55 69.98 86.49 106.66 170.64 109.30 123.25 43.05 61.29 46 I11 Intron 0 13.72 10.06 27.72 30.83 85.35 110.74 115.17 59.76 156.98 23.33 1.32 0.61 1.98 1.14 1.05 2.53 0.00 6.59 80.41 3.27 2.26 0.00 3.52 47 I11_AR1 ActiveIntronRegion 0 14.84 10.16 28.23 30.54 97.32 117.63 113.20 54.71 144.82 18.73 1.55 1.01 1.54 1.10 1.35 3.24 0.00 6.75 82.61 2.17 2.58 0.00 3.92 48 I11_SR1 SilentIntronRegion 0 12.23 10.08 27.41 31.79 68.36 101.97 120.14 68.55 178.27 30.81 0.99 0.00 2.69 1.22 0.60 1.50 0.00 6.44 78.41 5.00 1.79 0.00 2.96 49 E12_Aa NovelBoundary 0 19.93 9.08 84.77 100.55 159.00 174.79 222.05 105.52 303.76 36.18 0.00 0.00 0.00 0.00 6.30 0.00 0.00 7.75 64.85 2.43 9.08 2.82 8.37 50 ER12a ExonRegion 0 100.78 141.34 190.38 201.46 345.20 279.33 221.60 188.73 301.65 159.74 86.22 21.95 51.97 128.35 69.51 75.74 79.12 153.23 225.84 82.53 121.18 31.88 49.83 51 E12_Da NovelBoundary 0 9.93 3.35 104.55 97.59 169.35 156.44 218.96 141.71 347.07 42.55 0.00 12.60 6.82 2.47 0.00 0.00 3.83 15.84 97.60 12.14 8.83 0.00 0.00 52 E12a_E13a KnownJunction 0 135.43 189.44 160.20 135.01 488.03 323.45 246.16 135.13 162.18 137.29 90.71 32.11 40.58 158.40 104.95 65.28 109.58 118.56 197.75 97.15 152.34 31.05 46.52 53 I12 Intron 0 14.28 9.30 53.87 61.77 109.84 124.76 129.74 96.61 225.41 26.19 0.00 0.41 2.65 1.53 0.80 0.68 0.38 4.10 59.37 1.46 2.02 0.00 0.00 54 I12_AR1 ActiveIntronRegion 0 14.35 9.34 54.11 62.05 110.34 125.31 130.30 97.04 226.42 26.31 0.00 0.41 2.66 1.54 0.80 0.68 0.38 4.12 59.61 1.47 2.02 0.00 0.00 55 E13_Aa NovelBoundary 0 63.20 32.30 114.60 151.46 298.90 364.17 410.49 135.30 412.70 46.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.05 117.56 2.94 0.00 0.00 3.41 56 ER13a ExonRegion 0 71.94 88.17 212.34 181.12 471.70 359.18 295.47 219.52 460.22 138.63 54.82 14.39 32.80 89.05 43.40 40.92 39.03 71.21 261.96 54.32 58.77 24.76 39.42 57 E13_Da KnownBoundary 0 10.22 0.00 4.52 5.03 20.97 55.82 49.20 10.68 116.38 29.09 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 13.65 0.00 0.00 0.00 0.00 58 ER13b ExonRegion 0 98.32 10.73 7.45 12.40 71.23 111.23 144.19 48.31 38.98 10.10 0.00 0.22 0.00 0.43 1.54 0.00 0.00 8.33 133.91 2.88 7.25 0.00 0.00