Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TMEM209 Gene 0 42.12 52.35 47.75 66.10 105.73 93.84 76.94 58.88 85.96 82.13 99.53 120.15 118.49 115.90 82.88 83.51 115.96 59.51 56.67 54.07 29.89 56.51 27.13 2 471985 Transcript 0 0.37 1.37 0.00 0.00 0.00 0.31 0.45 0.00 0.00 0.00 0.00 0.51 5.87 2.47 2.99 0.99 1.10 0.00 0.00 1.54 0.00 0.35 1.47 3 336804 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 397622 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 473456 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 471077 Transcript 0 0.47 1.26 1.07 0.83 3.24 8.75 7.35 1.00 3.76 0.67 3.50 2.51 1.32 4.23 2.59 0.40 4.25 6.23 2.56 5.41 0.54 0.31 0.00 7 462753 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.92 3.48 5.75 0.00 0.00 0.00 8 467599 Transcript 0 16.74 12.54 4.59 8.62 12.49 9.24 21.35 5.22 5.88 7.90 9.06 11.43 13.52 3.99 13.04 15.68 16.30 8.52 10.85 23.39 9.19 10.07 19.08 9 479804 Transcript 0 3.86 1.54 0.15 0.62 2.15 1.11 6.23 3.97 1.40 0.52 0.59 4.30 5.08 3.64 5.05 2.26 0.79 0.00 0.83 1.40 2.33 0.31 1.96 10 ER1a ExonRegion 0 0.07 0.06 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.15 0.20 0.27 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 11 ER2a ExonRegion 0 1.04 4.05 0.00 0.00 0.00 0.92 1.31 0.00 0.00 0.00 0.00 1.53 17.47 7.20 8.70 2.97 3.30 0.00 0.00 4.09 0.00 1.04 4.40 12 E2_Da NovelBoundary 1 181.37 196.74 86.63 127.82 93.97 64.39 147.02 122.85 101.56 128.48 69.39 25.21 28.73 13.19 52.91 138.34 129.97 172.40 117.09 107.13 59.86 20.02 110.63 13 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER3a ExonRegion 0 1.50 2.10 0.18 0.62 4.96 7.53 4.32 0.00 2.08 1.16 6.24 0.00 0.00 6.34 4.90 19.04 5.64 5.25 9.89 4.14 3.21 2.08 3.33 15 E3_Ab NovelBoundary 0 6.52 18.35 1.30 2.06 12.39 20.22 28.71 0.00 8.42 4.97 21.85 0.00 0.00 35.73 23.98 59.81 26.09 21.68 53.08 20.45 13.96 7.72 16.13 16 E3a_E4a KnownJunction 1 134.76 157.87 17.95 32.03 224.28 344.40 257.47 36.93 83.82 106.35 284.97 23.56 43.67 275.24 144.76 382.21 247.69 124.40 236.05 163.95 93.53 73.30 117.72 17 ER3b ExonRegion 1 39.91 49.29 5.25 13.17 70.08 112.65 80.32 7.65 27.88 39.16 100.88 0.00 1.79 141.92 55.12 181.30 67.28 56.14 102.08 58.16 46.70 24.31 53.28 18 ER3c ExonRegion 1 84.66 118.40 18.11 25.89 137.65 242.88 185.50 34.76 78.09 93.41 250.85 0.00 12.51 198.86 110.89 295.23 222.63 114.15 195.37 131.21 78.35 62.51 92.34 19 E3_Ad KnownBoundary 0 0.00 2.96 0.00 0.00 0.00 19.48 8.48 0.00 2.81 0.00 0.00 0.00 6.82 2.12 4.45 0.00 8.88 4.56 4.80 9.59 0.00 0.00 0.00 20 ER3d ExonRegion 0 0.00 0.00 0.34 0.00 1.50 11.74 5.88 0.00 0.59 0.32 1.62 0.00 2.25 1.23 2.90 0.00 6.73 4.73 4.08 6.98 0.00 0.00 0.00 21 ER3e ExonRegion 0 2.24 0.01 1.50 0.47 1.92 4.84 4.41 1.66 5.35 2.43 6.64 2.19 1.27 2.40 1.29 1.76 7.04 10.76 5.93 8.00 1.84 0.40 1.13 22 E3_Db KnownBoundary 0 6.37 0.00 7.10 1.56 0.00 0.00 5.70 2.34 4.02 2.63 5.26 5.85 0.00 2.47 0.00 0.00 9.26 6.63 7.91 6.20 2.90 0.00 0.00 23 E3b_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.92 3.48 5.75 0.00 0.00 0.00 24 ER3f ExonRegion 0 1.40 1.07 2.86 2.49 8.23 14.51 12.11 3.01 7.40 1.70 6.18 7.54 1.70 4.63 4.88 1.20 6.00 11.52 3.60 6.44 1.63 0.92 0.00 25 E3c_E4a KnownJunction 0 0.00 2.70 0.00 0.00 0.00 0.00 4.06 0.00 3.30 0.00 2.68 0.00 0.00 6.83 0.00 0.00 0.00 2.45 0.00 2.81 0.00 0.00 0.00 26 ER4a ExonRegion 0 32.50 58.93 23.86 32.17 61.60 98.10 82.11 46.30 85.88 97.85 185.28 62.41 61.31 67.49 33.25 120.36 194.73 85.05 78.73 81.15 49.51 46.69 35.82 27 E4a_E5a KnownJunction 1 14.08 2.83 32.55 59.60 29.12 33.50 34.93 60.05 134.32 166.79 364.57 114.79 76.46 91.06 19.04 157.14 317.91 91.45 87.81 107.51 86.67 38.45 29.11 28 ER5a ExonRegion 1 12.83 8.13 28.83 59.75 27.01 26.70 28.01 65.84 142.54 172.25 409.41 157.48 79.88 255.80 90.48 315.70 410.34 140.60 212.62 172.47 70.52 104.96 77.82 29 E5_Da NovelBoundary 0 13.04 20.72 31.02 69.79 33.19 22.60 45.27 78.86 159.81 182.47 339.30 167.90 106.81 324.45 170.72 421.60 383.73 156.32 297.04 226.46 48.00 164.41 108.07 30 E5b_E6a KnownJunction 1 12.82 3.35 32.20 61.83 27.50 44.24 11.17 69.87 124.04 160.61 173.68 77.43 125.64 232.50 132.64 414.76 174.38 207.10 205.18 167.91 44.97 140.90 99.62 31 ER5b ExonRegion 0 9.96 6.93 29.50 61.89 28.14 30.63 17.51 69.46 134.22 168.89 233.16 99.90 118.12 256.73 152.58 405.31 272.63 194.01 226.04 178.17 45.54 158.42 93.21 32 ER6a ExonRegion 0 11.59 34.96 33.44 48.79 111.29 160.93 115.80 60.86 104.69 116.71 206.25 185.12 159.28 171.92 74.97 164.12 216.41 140.58 84.99 95.73 68.26 67.76 42.76 33 E6a_E7a KnownJunction 0 19.86 148.26 19.63 59.97 85.31 224.87 180.27 59.80 143.81 151.26 223.00 230.78 168.33 225.85 127.45 249.93 284.15 149.36 101.56 93.19 105.45 98.03 47.63 34 ER7a ExonRegion 0 36.70 78.84 37.04 55.13 62.89 93.51 80.24 58.58 97.39 110.50 226.31 196.41 190.27 243.33 90.44 200.30 264.37 188.67 99.92 105.52 94.48 92.04 53.08 35 E7_Da KnownBoundary 0 55.27 50.71 38.38 45.48 60.27 35.43 56.17 79.60 93.84 104.33 199.42 240.83 252.74 231.39 111.63 266.08 243.48 246.07 152.00 139.47 108.60 48.68 59.16 36 ER7b ExonRegion 1 21.50 33.04 31.89 52.09 48.79 64.51 46.38 49.05 98.87 93.09 204.77 185.32 177.16 250.98 71.27 187.67 264.07 196.60 105.36 100.38 98.17 67.71 56.90 37 E7b_E8a KnownJunction 1 37.49 25.46 36.90 38.89 76.83 81.09 77.77 37.62 73.06 77.17 214.90 98.43 140.09 242.86 65.02 182.26 300.89 179.04 114.07 83.92 105.02 97.06 56.34 38 Ix Intron 0 7.13 6.50 6.34 10.92 11.65 5.80 16.40 13.15 12.71 9.60 9.14 31.61 24.97 14.97 14.20 12.03 9.10 2.32 7.59 4.85 1.27 5.81 1.40 39 Ix_AR4 ActiveIntronRegion 0 7.11 5.06 7.07 11.12 10.65 8.90 13.34 15.38 16.72 9.57 15.39 30.79 33.46 16.11 18.74 10.72 10.68 2.97 7.53 5.82 1.37 2.33 1.83 40 Ix_AR3 ActiveIntronRegion 0 7.43 2.48 5.97 10.89 24.21 7.41 16.55 12.68 6.08 4.76 12.18 28.37 15.88 13.41 18.81 16.52 19.85 1.52 12.53 6.84 1.89 5.38 1.41 41 Ix_SR1 SilentIntronRegion 0 8.90 5.15 5.48 10.05 14.39 3.98 14.17 10.35 8.82 7.37 8.18 32.97 11.71 15.38 11.95 24.63 15.05 1.23 15.26 4.34 3.33 4.27 0.49 42 Ix_AR2 ActiveIntronRegion 0 5.91 5.68 6.70 12.24 8.64 4.16 18.04 13.72 13.98 11.20 6.08 32.55 27.08 16.45 11.79 10.12 5.19 2.65 5.29 3.72 0.58 8.37 1.03 43 Ix_AR1 ActiveIntronRegion 0 9.36 16.40 4.75 7.41 10.44 4.29 19.61 9.38 9.11 10.67 3.52 32.74 18.52 9.42 9.90 7.73 4.29 1.44 4.97 4.98 1.15 7.05 2.29 44 Ix_AR2 ActiveIntronRegion 0 9.89 23.15 3.76 9.97 20.29 4.12 6.10 6.39 5.51 2.08 3.15 13.37 28.25 5.60 9.75 5.25 4.54 3.02 5.20 3.47 0.90 1.70 0.00 45 E8_Aa NovelBoundary 0 41.12 12.23 9.17 20.71 19.10 13.80 26.72 11.87 26.59 15.07 2.68 10.80 8.12 5.06 0.00 15.55 11.78 8.71 12.61 2.75 2.47 0.00 0.00 46 ER8a ExonRegion 0 21.28 43.13 33.90 54.25 76.35 112.99 84.34 55.46 114.40 79.17 140.36 112.22 147.85 197.81 69.90 166.85 215.54 149.60 78.61 86.70 72.04 54.44 46.03 47 E8a_E9a KnownJunction 0 16.82 52.82 27.97 52.64 77.16 88.53 80.95 67.32 112.47 76.77 185.15 99.78 149.50 236.15 95.43 227.89 251.61 119.30 129.89 83.35 56.16 68.83 61.72 48 ER9a ExonRegion 0 33.86 41.98 43.40 56.80 88.42 113.94 79.09 55.67 95.09 90.81 159.02 115.25 120.58 202.11 78.61 150.06 219.64 106.16 77.55 80.27 65.28 67.55 46.07 49 E9a_E10a KnownJunction 0 24.45 43.22 37.88 49.68 112.14 121.41 85.54 61.90 71.32 85.77 131.98 120.64 147.88 189.65 82.58 165.94 170.08 99.61 94.40 79.77 84.88 95.10 26.89 50 ER10a ExonRegion 0 22.02 53.18 48.23 50.77 108.96 164.94 99.06 55.57 98.35 103.79 165.40 143.53 151.58 191.94 76.52 152.36 228.95 71.73 92.15 80.44 71.47 80.13 42.09 51 E10a_E11b KnownJunction 0 52.82 72.75 67.80 76.51 154.84 198.41 130.10 72.74 116.41 119.75 203.68 162.05 148.85 211.84 123.74 128.17 227.86 97.46 104.94 90.95 67.34 90.07 44.82 52 E11_Aa NovelBoundary 0 1644.96 1088.56 274.47 396.19 930.65 680.57 1268.66 452.02 364.93 341.07 330.66 425.09 390.72 398.85 406.95 1046.90 711.83 561.82 1067.51 916.44 493.29 373.52 1114.24 53 ER11a ExonRegion 0 16.74 12.54 4.59 8.62 12.49 9.24 21.35 5.22 5.88 7.90 9.06 11.43 13.52 3.99 13.04 15.68 16.30 8.52 10.85 23.39 9.19 10.07 19.08 54 E11_Ab KnownBoundary 0 3.70 3.09 0.00 5.23 0.00 2.78 5.92 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 3.59 4.77 2.03 0.00 3.26 0.00 2.88 0.00 55 ER11b ExonRegion 0 31.20 72.23 67.29 73.58 113.69 121.64 103.56 66.08 113.84 109.70 179.20 131.33 150.37 199.82 87.61 139.07 222.12 110.46 87.66 76.73 81.58 76.35 52.40 56 E11a_E12a KnownJunction 0 34.75 88.80 60.23 79.11 111.63 111.30 90.36 71.22 105.76 100.65 162.09 212.02 194.95 150.75 86.28 149.19 185.04 137.58 105.41 75.23 45.16 72.62 77.00 57 E11a_E13a KnownJunction 0 0.00 11.18 16.50 4.30 8.66 14.03 7.33 2.30 7.61 9.19 19.74 7.50 18.83 21.72 14.09 16.06 36.00 16.21 14.40 12.14 5.99 2.39 0.00 58 ER12a ExonRegion 0 25.27 63.89 57.06 81.96 108.63 91.44 85.33 65.47 106.75 112.81 147.22 223.78 201.95 205.08 98.12 162.85 210.86 120.52 123.33 84.47 59.07 88.38 64.21 59 E12_Ab KnownBoundary 0 16.15 41.05 38.53 52.57 50.17 51.67 59.40 23.66 49.36 65.84 79.18 79.23 99.83 62.39 22.75 92.11 84.99 50.78 78.97 46.08 36.26 48.68 42.25 60 E12_Da KnownBoundary 0 20.60 28.55 36.52 19.38 59.00 47.13 53.97 23.41 51.19 39.65 59.86 58.22 48.05 56.04 36.84 37.00 65.83 43.44 33.04 37.58 27.24 42.31 22.19 61 ER12b ExonRegion 0 21.17 73.21 74.13 75.64 132.45 117.36 128.42 61.36 122.28 114.69 167.20 205.65 218.09 203.83 113.15 160.49 229.41 117.33 127.41 79.79 74.93 100.01 67.54 62 ER12c ExonRegion 0 15.19 69.61 66.73 70.18 162.61 141.75 121.39 62.38 126.59 98.21 173.35 191.86 219.36 251.91 122.46 145.16 209.40 111.42 125.96 92.76 80.38 92.00 56.57 63 E12b_E13a KnownJunction 0 23.56 71.43 61.59 77.58 197.11 169.90 88.10 91.60 140.31 89.83 193.00 196.26 218.01 315.97 119.29 112.88 196.26 116.28 119.82 117.10 93.35 77.58 56.17 64 ER13a ExonRegion 0 39.95 72.67 81.05 104.71 132.29 164.12 107.43 99.37 164.79 128.29 200.69 206.71 227.56 295.72 116.64 219.39 280.58 225.50 177.86 117.15 66.25 112.34 86.93 65 E13_Da KnownBoundary 0 0.00 0.00 1.83 0.00 3.90 0.00 15.10 6.16 0.00 0.00 0.00 0.00 6.82 2.47 4.45 0.00 4.77 0.00 3.95 3.07 0.00 0.00 6.91 66 E13a_E14a KnownJunction 0 33.41 62.75 103.43 122.20 112.73 141.51 106.34 124.58 169.41 170.82 220.32 282.84 187.65 270.35 116.45 115.95 300.51 178.46 129.51 69.93 57.33 100.91 48.57 67 ER13b ExonRegion 0 3.86 1.54 0.15 0.62 2.15 1.11 6.23 3.97 1.40 0.52 0.59 4.30 5.08 3.64 5.05 2.26 0.79 0.00 0.83 1.40 2.33 0.31 1.96 68 ER14a ExonRegion 0 31.86 63.04 84.40 106.79 121.71 140.44 121.79 114.95 163.44 140.99 201.58 208.12 257.91 252.97 102.70 122.48 268.41 124.76 133.18 97.74 66.65 87.13 38.46 69 E14a_E15a KnownJunction 1 30.97 73.54 122.64 150.83 147.88 130.27 127.54 167.42 209.78 168.24 177.73 256.43 305.17 199.66 96.17 97.50 315.75 179.00 122.54 58.93 49.42 84.81 30.39 70 ER15a ExonRegion 0 77.25 83.52 92.80 114.87 194.26 154.97 114.97 122.39 170.84 131.55 225.30 261.58 306.38 268.74 108.12 172.66 256.63 135.39 157.12 100.41 43.44 135.36 51.00 71 E15a_E16a KnownJunction 0 53.05 53.02 76.22 92.33 166.89 104.60 88.15 104.29 146.90 126.76 214.21 273.39 180.83 201.96 125.35 124.16 177.93 66.37 86.59 82.71 19.46 105.20 19.12 72 ER16a ExonRegion 0 75.02 87.99 60.69 100.21 100.67 104.28 83.05 85.54 150.70 124.80 199.04 275.86 285.71 167.48 115.58 96.19 222.23 42.85 51.87 83.93 20.01 85.90 23.37 73 E16a_E17a KnownJunction 0 51.19 112.74 59.31 100.02 106.88 105.28 82.58 84.74 171.24 127.30 161.99 319.60 297.55 150.51 116.82 88.95 208.88 25.99 46.02 68.20 19.15 84.20 27.74 74 I16_AR2 ActiveIntronRegion 0 5.95 4.72 7.04 16.05 15.21 5.97 15.14 8.71 11.32 16.65 3.89 13.53 10.32 5.09 6.93 7.71 7.00 1.70 1.69 3.95 0.00 2.94 1.59 75 ER17a ExonRegion 0 76.60 142.34 82.17 123.90 228.75 193.20 166.98 102.68 158.32 151.20 147.77 318.10 287.26 163.92 134.98 103.54 138.17 33.34 75.41 69.98 17.51 134.54 33.09 76 E17_Da KnownBoundary 1 145.51 174.64 39.41 54.14 300.68 169.85 162.47 32.12 60.27 52.76 105.08 288.99 238.78 126.38 119.79 71.43 136.23 20.06 37.93 51.65 29.90 64.72 28.34 77 ER17b ExonRegion 0 78.09 66.14 79.47 108.25 174.24 117.83 97.61 87.98 104.36 104.97 66.45 116.97 107.57 95.89 137.32 50.10 68.78 29.46 39.93 43.33 13.17 55.93 16.94