Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ADCK2 Gene 0 27.20 42.80 126.51 72.04 44.97 115.65 41.28 70.17 124.52 86.69 72.42 15.22 10.37 73.25 58.80 51.93 39.64 66.87 51.59 46.75 42.20 15.47 17.89 2 72869 Transcript 0 12.91 12.10 17.49 15.84 23.01 17.38 7.02 15.99 27.82 12.82 7.06 4.98 1.99 10.60 23.14 5.87 7.76 2.82 10.27 10.74 3.64 7.29 2.13 3 476491 Transcript 0 1.37 0.04 6.66 0.08 0.04 0.29 0.01 1.22 1.19 0.07 0.01 0.00 0.00 0.07 0.06 0.01 0.00 0.42 0.00 0.00 0.00 1.61 0.00 4 483369 Transcript 0 0.00 0.00 0.94 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 498423 Transcript 0 0.23 0.92 5.19 3.52 2.59 1.15 2.74 3.04 3.29 1.74 0.62 0.03 1.39 0.88 1.70 0.67 0.41 0.88 0.75 1.15 0.50 0.20 1.31 6 473512 Transcript 0 0.00 0.00 2.57 0.00 0.00 2.90 0.00 2.26 0.00 1.05 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 2.75 0.00 0.00 0.00 7 ER1a ExonRegion 0 6.68 17.26 75.57 28.01 11.07 67.45 19.04 37.95 83.35 80.87 56.82 8.00 10.72 71.23 43.48 48.96 37.93 64.41 44.68 32.65 35.92 13.02 17.27 8 E1_Ab KnownBoundary 0 20.45 57.49 189.11 59.63 48.64 129.07 61.83 71.35 179.74 112.95 95.29 19.36 13.15 108.60 71.45 92.88 91.63 94.31 90.54 62.06 66.78 27.19 8.45 9 ER1b ExonRegion 0 30.27 83.85 171.87 96.03 57.27 176.39 66.24 84.81 174.81 121.09 94.75 22.79 15.71 104.59 57.52 75.03 51.64 79.62 65.30 64.10 54.65 19.07 20.84 10 E1a_E2b KnownJunction 1 24.89 133.07 177.70 157.42 61.55 163.37 88.37 107.57 225.23 146.13 82.13 13.05 6.33 107.01 69.47 98.44 32.26 111.22 78.59 54.20 58.63 28.23 15.96 11 ER2a ExonRegion 0 0.23 0.92 5.19 3.52 2.59 1.15 2.74 3.04 3.29 1.74 0.62 0.03 1.39 0.88 1.70 0.67 0.41 0.88 0.75 1.15 0.50 0.20 1.31 12 E2_Ab KnownBoundary 0 0.00 0.00 8.40 0.00 16.55 0.00 0.00 6.61 2.84 0.00 0.00 0.00 6.33 0.00 0.00 0.00 0.00 2.03 0.00 2.62 0.00 0.00 0.00 13 ER2b ExonRegion 0 40.82 91.48 213.14 133.27 85.79 189.72 75.04 121.76 217.05 144.46 133.36 18.83 12.56 115.25 76.80 79.53 59.48 117.10 87.73 71.48 69.70 22.36 35.34 14 E2a_E3a KnownJunction 0 87.87 101.17 225.69 166.81 96.18 273.71 96.85 147.87 245.45 162.14 153.78 31.06 6.66 144.45 85.79 118.00 52.45 124.24 78.21 86.42 108.91 40.23 50.96 15 ER3a ExonRegion 0 61.33 67.69 268.84 178.69 89.69 247.99 81.26 155.71 253.61 163.79 169.41 30.44 22.10 128.51 85.89 99.92 75.82 181.12 121.41 84.68 88.22 31.75 37.72 16 E3a_E4a KnownJunction 0 48.01 67.09 268.83 201.14 55.09 191.03 57.32 151.85 252.83 126.28 149.99 38.56 18.83 106.72 105.94 92.28 49.46 150.06 94.78 89.42 73.64 22.47 50.96 17 E3a_E5a NovelJunction 0 0.00 0.00 14.46 0.00 12.39 13.51 6.18 5.91 10.71 1.67 7.05 0.00 0.00 9.54 5.81 0.00 0.00 9.37 0.00 3.26 2.59 0.00 0.00 18 ER4a ExonRegion 0 53.82 73.93 244.47 161.50 102.43 238.20 74.00 141.73 240.47 152.91 160.43 39.96 14.02 118.39 106.41 88.02 74.51 124.63 105.05 86.37 79.54 27.78 36.92 19 E4_Da NovelBoundary 0 0.00 0.00 1.66 3.43 0.00 0.00 4.42 0.00 4.20 0.00 0.00 0.00 0.00 0.00 0.00 3.67 0.00 0.00 3.95 0.00 0.00 2.82 11.61 20 E4a_E5a KnownJunction 0 85.87 88.34 239.67 146.77 151.27 312.04 86.78 143.96 227.57 159.16 153.41 25.81 36.36 123.14 110.64 90.66 66.76 112.71 106.26 87.69 91.99 30.43 36.71 21 E4a_E6a NovelJunction 0 3.78 6.25 9.64 5.36 3.23 8.01 1.85 1.93 8.56 1.07 2.58 0.00 0.00 2.47 0.00 0.00 8.32 2.57 17.98 2.62 0.00 3.12 0.00 22 ER5a ExonRegion 0 52.24 64.13 212.98 121.06 81.37 201.68 71.57 121.09 198.48 113.45 120.78 33.69 20.53 93.72 85.87 70.26 60.76 95.34 84.00 84.72 74.85 24.18 28.56 23 E5_Da KnownBoundary 0 33.86 62.88 205.05 98.86 105.60 259.11 117.16 91.14 165.77 82.44 107.87 32.41 14.12 91.24 78.37 53.15 44.23 100.23 94.78 107.96 83.89 19.04 22.45 24 ER5b ExonRegion 0 37.40 47.10 175.46 88.05 80.21 162.37 62.23 92.77 142.68 88.25 80.92 22.98 1.33 85.10 87.20 46.91 32.30 68.47 79.16 86.80 69.97 11.67 16.12 25 E5b_E6a KnownJunction 0 40.75 54.20 230.15 124.76 86.50 116.75 54.01 126.51 159.17 93.67 82.49 6.30 0.00 63.22 59.46 61.18 28.05 75.57 44.80 54.14 49.98 8.94 7.51 26 E5b_E7a KnownJunction 0 0.00 0.00 2.57 0.00 0.00 2.90 0.00 2.26 0.00 1.05 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 2.75 0.00 0.00 0.00 27 ER6a ExonRegion 0 58.97 69.03 195.80 106.27 68.74 197.30 67.28 110.74 164.50 103.27 108.06 16.18 14.65 97.67 114.39 82.46 63.54 106.64 61.56 73.05 54.43 16.38 21.54 28 E6_Da NovelBoundary 0 3.33 0.00 8.60 6.79 4.33 10.45 10.42 2.55 8.10 3.57 0.00 0.00 0.00 2.47 15.33 0.00 0.00 11.48 0.00 3.00 0.00 0.00 11.27 29 E6a_E7a KnownJunction 0 62.97 92.62 190.89 121.70 89.73 224.64 105.59 94.63 171.32 120.80 111.82 5.55 12.34 104.83 86.04 75.45 63.96 94.26 97.70 113.90 35.83 19.53 28.68 30 ER7a ExonRegion 0 51.23 79.84 153.81 117.59 86.91 177.47 69.09 107.39 158.99 126.31 105.34 14.75 5.38 104.15 101.60 65.83 58.80 90.68 62.65 78.92 53.13 22.76 19.52 31 E7a_E8a KnownJunction 0 80.83 85.45 141.69 110.41 116.89 155.02 61.08 121.70 156.07 132.54 79.13 30.46 19.15 129.50 142.16 74.94 48.25 80.01 99.39 59.06 39.54 23.15 26.89 32 E7a_E9a KnownJunction 0 2.74 0.00 7.60 0.00 0.00 0.00 0.00 2.18 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.00 0.00 33 E7a_E10a KnownJunction 0 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 Ix Intron 0 16.78 13.80 17.31 23.05 21.84 28.38 18.67 21.40 48.72 12.85 9.62 6.10 4.79 7.64 6.72 9.56 7.82 13.27 9.97 8.71 9.02 4.94 4.81 35 Ix_SR1 SilentIntronRegion 0 7.44 7.97 13.01 13.05 17.06 21.67 11.33 18.88 44.15 8.25 9.04 8.33 2.53 7.64 6.91 9.15 5.26 9.08 6.66 6.09 5.86 4.34 3.74 36 Ix_AR1 ActiveIntronRegion 0 10.53 9.82 15.48 19.59 17.22 30.26 15.87 20.61 48.09 12.85 11.82 3.62 4.10 7.22 8.44 10.51 8.38 15.48 8.15 9.31 13.37 3.70 4.91 37 Ix_AR2 ActiveIntronRegion 0 25.27 19.44 21.45 30.34 28.09 30.60 24.49 24.31 52.91 15.17 8.82 7.62 6.26 8.37 5.61 9.66 8.25 13.49 11.75 9.18 7.02 5.99 5.14 38 E8_Aa NovelBoundary 0 40.45 24.54 28.80 45.32 30.98 26.29 25.26 24.93 60.59 24.34 17.79 0.00 6.49 19.37 8.90 7.86 8.32 10.03 19.20 17.32 20.45 12.12 3.50 39 ER8a ExonRegion 0 46.58 43.54 157.92 99.63 69.30 113.78 46.17 97.35 156.00 97.00 65.27 18.45 9.85 78.81 98.05 52.96 40.81 55.77 48.56 48.93 40.51 21.92 18.12 40 E8_Da KnownBoundary 1 119.35 50.25 76.67 61.40 78.35 85.12 35.68 65.35 107.03 49.56 19.69 11.70 6.66 30.67 89.50 22.05 17.77 11.28 36.99 31.96 15.20 18.19 15.11 41 ER8b ExonRegion 0 12.91 12.10 17.49 15.84 23.01 17.38 7.02 15.99 27.82 12.82 7.06 4.98 1.99 10.60 23.14 5.87 7.76 2.82 10.27 10.74 3.64 7.29 2.13 42 E8_Db NovelBoundary 0 16.15 12.89 5.74 8.89 18.93 9.82 16.16 24.60 34.03 4.43 2.63 6.00 14.45 11.95 4.45 3.25 0.00 6.88 0.00 2.75 5.44 0.00 3.67 43 E9_Aa NovelBoundary 0 23.78 9.67 8.04 9.46 26.40 23.51 12.19 17.50 29.25 7.47 10.84 12.45 0.00 12.01 8.90 7.60 4.68 8.12 23.72 5.37 0.00 4.84 11.61 44 ER9a ExonRegion 0 0.00 0.07 5.73 0.16 0.08 0.58 0.02 0.27 1.14 0.14 0.01 0.00 0.00 0.13 0.12 0.02 0.00 0.84 0.00 0.00 0.00 0.22 0.00 45 E9_Da NovelBoundary 0 7.04 0.00 13.99 5.49 0.00 7.33 6.01 7.43 24.16 3.33 7.11 12.60 6.82 14.19 9.89 8.20 16.55 7.34 17.32 0.00 3.15 13.78 8.37 46 E10_Aa NovelBoundary 0 22.08 3.03 4.91 11.45 20.12 9.43 12.10 12.53 20.83 4.73 7.84 0.00 0.00 7.06 19.16 12.73 0.00 9.58 17.98 2.88 3.15 6.25 11.95 47 ER10a ExonRegion 0 0.00 0.00 0.28 0.00 0.00 0.02 0.01 0.00 0.00 0.02 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00