Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KLHDC10 Gene 0 38.61 100.95 40.43 69.36 114.07 157.38 115.36 81.68 262.26 92.57 68.72 87.90 66.59 92.84 45.86 75.29 71.17 88.94 111.65 97.23 76.97 71.17 62.75 2 335420 Transcript 0 46.59 118.33 27.05 52.02 102.96 140.24 89.84 66.15 213.57 72.42 72.66 102.85 138.44 125.08 70.48 75.87 77.08 75.04 83.54 92.64 76.28 65.78 58.10 3 463413 Transcript 0 9.33 43.61 5.94 10.39 15.37 47.87 10.11 19.30 40.62 15.31 15.06 0.00 8.28 26.13 15.08 30.76 20.76 30.84 36.24 24.35 31.01 14.51 15.11 4 468226 Transcript 0 3.55 0.00 0.00 1.14 0.00 0.00 0.00 1.33 0.49 0.94 1.17 9.17 2.78 2.73 0.00 2.31 0.00 0.00 0.00 1.55 0.00 0.00 0.00 5 467344 Transcript 0 4.84 10.57 3.98 4.20 15.07 3.51 8.93 3.15 4.75 4.56 1.28 5.13 11.08 5.13 3.30 4.76 5.81 1.29 2.03 9.48 2.70 0.48 1.29 6 495724 Transcript 0 15.31 11.56 5.56 9.07 7.36 10.11 12.09 7.11 12.72 6.18 6.34 23.21 20.11 19.26 20.48 18.18 10.24 8.23 12.10 7.69 6.51 5.38 3.05 7 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.49 2.68 0.00 0.00 0.28 1.27 0.00 0.00 2.69 0.00 0.80 2.82 0.27 1.01 1.04 0.70 0.20 2.22 8 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 6.76 1.81 0.00 0.00 2.47 0.00 5.84 7.06 0.00 0.00 4.58 0.00 0.00 2.56 0.00 0.00 4.35 9 ER1b ExonRegion 1 1.53 5.18 0.72 1.36 1.60 10.32 2.61 0.97 5.21 3.62 10.12 0.43 4.44 6.88 6.35 2.84 23.86 4.31 9.13 8.72 13.93 2.50 3.37 10 E1_Ac KnownBoundary 0 26.67 60.91 6.62 12.95 16.04 27.82 19.74 13.06 36.31 25.33 25.64 6.75 0.00 34.32 22.25 26.83 50.02 35.57 56.66 46.40 44.91 20.27 23.39 11 ER1c ExonRegion 0 19.68 65.79 10.56 11.60 12.29 64.33 17.46 15.84 45.20 25.76 33.85 10.65 2.92 49.56 25.80 36.55 56.12 33.26 52.52 38.99 51.94 26.35 26.83 12 E1a_E2a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.55 0.00 4.65 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 0.00 13 E1a_E3b KnownJunction 0 6.96 17.04 9.55 4.26 3.74 33.45 3.75 6.74 24.91 17.00 15.27 0.00 0.00 9.83 0.00 3.59 28.52 4.44 27.67 2.88 13.47 13.78 7.77 14 E1a_E4a KnownJunction 0 9.33 43.61 5.94 10.39 15.37 47.87 10.11 19.30 40.62 15.31 15.06 0.00 8.28 26.13 15.08 30.76 20.76 30.84 36.24 24.35 31.01 14.51 15.11 15 I1 Intron 0 15.29 18.99 15.29 25.02 28.38 11.21 35.28 16.49 27.63 9.80 3.73 22.06 30.10 4.90 14.52 15.95 13.50 9.99 18.33 21.13 4.90 3.51 7.73 16 I1_SR1 SilentIntronRegion 0 10.38 23.75 16.07 23.66 24.20 10.90 34.86 19.11 40.68 12.29 3.10 27.62 40.58 3.52 11.87 15.51 12.60 7.91 17.11 26.42 4.74 3.10 7.42 17 I1_AR1 ActiveIntronRegion 1 10.58 30.00 14.46 32.74 76.46 16.83 113.20 29.30 38.88 12.93 2.71 39.72 52.06 4.43 16.17 21.47 11.72 15.71 23.49 15.96 6.61 3.18 0.73 18 I1_AR2 ActiveIntronRegion 1 14.57 17.21 19.38 35.84 24.99 12.13 42.38 28.91 47.23 11.23 3.97 33.21 33.25 3.04 20.64 20.35 18.67 16.88 26.74 30.57 7.61 3.25 8.60 19 I1_SR2 SilentIntronRegion 0 16.50 17.98 14.81 24.42 29.25 11.18 34.22 14.83 23.07 9.10 3.86 19.80 27.32 5.36 14.64 15.67 13.32 9.87 17.91 19.25 4.71 3.62 7.79 20 E2_Aa NovelBoundary 1 3.78 34.53 17.92 14.68 11.38 7.84 16.52 7.23 22.60 8.73 2.21 44.11 65.74 9.42 0.00 7.43 9.35 1.62 9.41 17.77 2.47 2.63 8.71 21 ER2a ExonRegion 0 3.09 0.00 0.00 1.36 0.00 0.00 0.00 1.45 0.03 1.15 0.94 9.36 1.52 1.05 0.00 2.65 0.00 0.00 0.00 1.38 0.00 0.00 0.00 22 E2_Da NovelBoundary 1 0.00 2.70 12.36 24.27 36.67 0.00 36.92 9.36 22.14 11.93 4.58 25.21 40.91 3.00 14.46 7.78 8.23 0.00 0.00 15.85 3.09 8.94 7.17 23 E2a_E3b KnownJunction 0 7.56 0.00 0.00 0.00 0.00 0.00 0.00 2.55 1.45 1.67 2.58 12.60 6.82 2.47 0.00 4.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 I2 Intron 0 5.89 17.08 5.72 14.34 24.21 8.67 26.52 10.50 24.61 10.79 3.94 18.55 24.42 6.16 5.56 10.64 10.17 3.48 7.92 18.83 3.61 5.90 6.13 25 I2_SR1 SilentIntronRegion 0 5.90 17.10 5.72 14.36 24.24 8.68 26.55 10.51 24.63 10.80 3.94 18.56 24.44 6.17 5.57 10.65 10.18 3.48 7.92 18.85 3.62 5.91 6.14 26 E3_Aa NovelBoundary 0 0.00 37.03 7.75 30.40 23.51 0.00 35.02 9.61 46.96 10.07 9.16 40.81 26.78 11.71 19.90 11.36 16.64 5.80 17.98 7.86 2.41 19.23 12.29 27 ER3a ExonRegion 1 9.67 21.15 7.96 8.41 25.81 7.02 17.86 6.30 9.50 9.12 2.56 10.26 22.15 7.80 6.61 9.51 11.63 2.59 4.07 18.95 5.39 0.96 2.58 28 E3_Ab KnownBoundary 1 27.56 42.62 17.12 18.88 14.26 10.96 14.79 15.85 24.31 19.26 2.68 18.46 36.20 14.48 11.37 32.30 20.20 4.93 16.94 32.34 2.53 3.12 3.33 29 ER3b ExonRegion 1 13.51 43.84 11.44 21.90 8.84 26.53 22.98 22.51 51.49 22.62 7.78 39.87 25.74 23.30 14.17 29.86 31.63 11.43 22.67 33.60 20.60 20.21 10.69 30 E3_Da NovelBoundary 0 13.78 2.89 3.13 21.41 14.77 21.75 31.05 12.94 18.72 8.62 5.37 25.21 8.28 7.06 4.94 15.55 9.26 4.89 8.09 42.57 5.93 0.00 4.35 31 E3a_E4a KnownJunction 0 6.45 11.91 5.00 7.76 7.47 13.80 42.22 15.94 64.18 22.08 5.16 0.00 0.00 8.48 27.94 12.05 29.92 21.72 23.72 26.21 34.47 17.94 7.51 32 I3 Intron 0 13.95 17.16 15.67 25.81 27.06 15.50 27.65 15.29 25.16 11.60 2.96 14.37 19.42 4.76 7.83 9.26 6.49 6.99 12.92 13.13 2.70 4.62 4.58 33 I3_SR1 SilentIntronRegion 0 7.16 8.23 6.69 12.21 13.95 8.26 22.77 5.26 10.70 4.91 1.81 11.65 16.80 3.35 5.84 6.65 6.59 3.95 9.04 9.96 1.77 3.06 3.69 34 I3_AR1 ActiveIntronRegion 0 25.44 26.43 42.22 47.92 49.22 21.57 46.82 23.75 45.70 19.52 4.42 19.11 36.84 8.56 11.31 11.85 9.22 7.60 9.38 13.54 0.85 7.26 6.76 35 I3_AR3 ActiveIntronRegion 0 27.69 25.80 42.84 45.16 59.39 25.36 48.64 41.82 42.49 17.90 3.52 23.48 22.10 4.95 13.20 17.67 14.71 13.43 33.52 26.82 5.04 4.91 5.12 36 I3_AR4 ActiveIntronRegion 0 34.45 22.82 54.81 45.47 37.65 28.70 33.85 43.19 49.81 18.42 3.26 31.62 13.85 5.97 14.41 25.82 23.95 19.34 43.37 31.69 8.81 5.60 8.13 37 I3_AR5 ActiveIntronRegion 0 17.23 11.63 36.11 34.23 34.29 23.97 25.09 28.98 46.91 20.00 2.70 15.00 27.05 10.88 1.35 20.25 8.52 23.59 25.93 19.94 4.92 0.73 6.49 38 I3_AR6 ActiveIntronRegion 0 21.80 26.64 36.52 27.94 34.25 38.88 40.91 30.08 45.70 23.86 5.80 21.65 22.04 14.29 8.70 24.37 5.61 29.19 38.54 28.72 2.20 0.00 4.70 39 I3_SR3 SilentIntronRegion 0 22.68 27.89 32.73 26.87 39.37 40.61 41.80 30.87 43.41 22.94 5.80 21.65 36.18 11.83 12.43 26.32 9.90 29.56 31.85 29.18 3.78 0.00 5.87 40 I3_AR7 ActiveIntronRegion 1 25.19 24.40 25.61 16.63 42.81 38.51 48.46 22.12 30.75 16.40 5.41 22.51 31.89 7.31 19.44 25.56 15.84 27.16 34.40 35.74 10.80 0.00 3.52 41 I3_AR8 ActiveIntronRegion 1 16.40 6.86 18.84 13.12 27.76 25.90 30.62 11.67 21.15 13.05 1.93 8.66 24.62 3.65 14.87 23.78 16.50 20.79 22.30 21.01 8.81 0.00 2.94 42 I3_SR4 SilentIntronRegion 0 14.15 18.86 14.01 27.12 27.67 16.40 26.46 16.04 26.62 12.55 3.15 14.12 18.52 4.75 7.85 8.94 5.52 7.13 12.80 13.10 2.93 4.96 4.59 43 E4_Aa NovelBoundary 0 0.00 39.01 4.85 27.20 24.02 7.84 11.04 13.06 44.21 22.94 4.42 6.30 27.92 2.47 22.62 14.70 13.56 22.14 25.04 9.01 5.19 2.76 13.06 44 ER4a ExonRegion 0 29.97 53.01 29.57 40.92 61.29 91.90 52.22 51.46 178.17 69.54 75.34 40.97 58.46 100.16 71.97 65.91 76.56 92.83 106.41 88.53 102.59 58.98 58.11 45 E4_Da NovelBoundary 0 10.45 31.51 16.20 24.81 8.66 34.92 32.77 21.36 17.74 24.74 4.84 0.00 20.29 21.66 15.08 16.24 4.77 15.25 23.25 18.22 11.98 10.78 8.37 46 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.69 0.00 2.21 11.55 0.00 16.83 4.45 16.41 0.00 4.15 8.28 0.00 0.00 0.00 0.00 47 E4a_E6a KnownJunction 0 39.41 67.95 21.50 39.72 61.80 110.45 36.35 28.51 201.36 82.25 84.60 76.98 69.96 143.21 98.52 74.34 55.91 120.46 121.13 97.99 117.38 84.69 68.72 48 I4 Intron 0 10.10 23.88 8.04 12.30 27.49 16.84 19.92 15.59 16.88 11.59 6.03 10.65 20.95 12.75 14.65 14.18 19.38 5.57 12.86 16.78 7.28 7.64 7.54 49 I4_SR1 SilentIntronRegion 0 10.17 24.04 8.10 12.38 27.68 16.96 20.06 15.71 17.01 11.67 6.07 10.73 21.11 12.84 14.76 14.28 19.46 5.61 12.94 16.91 7.31 7.70 7.60 50 E5_Aa NovelBoundary 0 32.01 53.87 117.41 208.73 51.53 34.75 75.74 152.84 137.87 139.33 9.42 0.00 0.00 7.77 10.88 32.73 32.91 71.71 28.42 39.44 13.71 26.64 29.62 51 ER5a ExonRegion 1 30.62 23.13 11.13 18.13 14.72 20.22 24.17 14.22 22.75 12.35 10.47 34.87 40.21 21.68 36.50 19.96 20.47 12.31 15.93 15.38 13.03 10.77 6.09 52 E5_Da NovelBoundary 0 197.81 116.30 619.05 778.82 134.72 76.60 150.37 812.12 628.41 652.99 34.85 27.01 75.16 68.52 48.09 116.55 80.13 673.70 116.52 119.53 77.78 44.58 114.39 53 I5 Intron 0 24.90 15.89 16.18 19.80 36.86 17.29 25.50 20.75 30.26 14.60 8.41 24.97 30.27 17.48 16.05 20.11 13.03 5.86 13.60 17.14 5.15 8.89 5.92 54 I5_SR1 SilentIntronRegion 0 24.94 15.91 16.21 19.83 36.92 17.31 25.54 20.79 30.31 14.62 8.42 25.01 30.32 17.51 16.07 20.15 13.05 5.87 13.62 17.17 5.16 8.91 5.92 55 E6_Aa NovelBoundary 0 33.93 30.06 13.07 30.40 46.01 43.16 53.44 10.39 48.35 20.36 4.53 25.06 13.64 33.49 18.05 20.25 35.16 21.85 16.28 24.16 8.83 16.10 14.94 56 ER6a ExonRegion 0 58.05 85.70 26.78 38.68 61.41 112.65 48.36 46.17 219.73 83.01 93.70 81.64 84.42 145.78 99.06 90.72 83.15 130.13 131.36 112.16 118.16 66.57 78.59 57 ER6b ExonRegion 0 49.25 106.44 46.32 60.51 96.11 148.93 86.26 70.72 284.09 92.67 108.27 117.61 110.57 152.24 93.32 117.20 123.24 127.15 179.64 128.14 132.86 84.07 80.87 58 E6b_E7a KnownJunction 0 34.38 110.05 44.71 60.53 98.81 140.09 82.50 66.62 296.87 108.25 97.50 129.79 108.27 121.84 103.71 99.89 141.75 107.65 154.36 155.00 146.29 86.09 69.66 59 ER7a ExonRegion 0 53.57 136.29 62.44 98.76 113.51 166.36 114.34 97.61 357.30 99.15 108.83 156.82 133.02 169.98 107.17 147.01 140.14 135.63 227.08 159.93 131.07 99.28 106.29 60 E7a_E8a KnownJunction 1 20.37 188.32 45.18 91.63 102.97 162.24 115.71 76.56 348.09 101.65 90.13 201.22 285.37 164.75 57.85 106.13 135.30 50.66 131.49 163.76 81.86 93.32 119.25 61 ER8a ExonRegion 1 46.41 137.24 56.78 85.34 103.30 100.44 85.73 99.57 341.80 93.25 96.05 165.60 227.41 185.57 120.75 151.26 101.42 100.57 178.65 154.25 110.34 118.69 93.97 62 E8b_E9a KnownJunction 0 58.31 150.10 60.35 118.27 140.83 119.65 117.30 103.22 424.76 116.88 121.50 210.67 172.39 174.82 96.42 109.46 91.72 150.64 192.85 204.60 103.48 77.34 80.50 63 ER8b ExonRegion 0 52.91 115.91 57.59 104.94 133.79 113.70 100.62 107.16 394.00 113.54 119.84 203.48 136.01 165.66 92.84 101.05 89.12 147.82 168.82 189.36 85.94 79.17 88.10 64 ER9a ExonRegion 0 91.39 148.27 63.15 101.42 118.85 160.61 135.56 103.11 370.33 117.41 126.65 189.01 146.16 168.42 79.16 154.42 103.21 139.11 195.69 164.08 99.23 111.92 115.71 65 E9a_E10a KnownJunction 0 25.78 141.36 64.31 81.74 105.94 100.68 126.17 95.62 290.80 95.79 88.55 174.66 118.99 172.23 68.61 139.19 111.55 69.56 95.81 112.30 110.27 98.65 118.74 66 ER10a ExonRegion 1 47.27 146.25 46.44 84.70 172.86 229.84 131.21 108.46 354.38 112.68 120.77 216.92 246.81 213.37 96.95 152.32 99.71 97.01 117.86 158.29 109.36 131.09 111.71 67 E10a_E11a KnownJunction 1 98.76 206.81 19.81 78.31 284.04 409.25 186.68 103.84 342.82 102.56 143.72 254.63 565.06 332.86 201.13 181.75 117.25 131.28 190.12 194.31 125.78 159.33 128.47 68 E10a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 4.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69 ER11a ExonRegion 0 53.94 172.00 46.08 69.36 116.80 129.85 122.70 87.84 293.23 96.99 98.76 155.49 148.24 151.92 86.27 102.75 107.66 136.69 87.39 114.03 107.29 75.77 77.90 70 E11a_E12a KnownJunction 0 78.01 202.07 41.66 78.91 71.31 69.85 80.16 99.65 318.08 108.12 106.66 120.04 58.44 163.69 99.88 91.69 138.01 83.45 72.57 139.79 132.70 66.38 65.22 71 ER12a ExonRegion 0 34.86 120.56 48.96 79.37 112.08 129.41 127.73 77.19 320.92 106.18 90.36 136.09 68.02 124.31 77.08 98.51 101.38 123.05 103.58 116.70 93.48 82.60 77.63 72 E12_Da KnownBoundary 1 40.08 152.28 32.23 82.11 128.86 135.66 189.68 85.43 314.87 127.89 77.12 124.69 33.76 120.08 40.05 68.36 84.71 59.44 91.01 130.20 50.66 86.65 53.78 73 ER12b ExonRegion 0 41.85 112.08 45.22 81.26 141.89 198.57 143.05 98.82 302.37 109.59 70.26 86.95 58.91 89.49 35.63 74.67 68.22 94.10 122.47 103.82 77.74 79.21 67.00 74 IG6 Intergenic 0 173.95 370.36 147.40 205.44 283.73 297.88 217.24 184.83 390.86 159.88 66.72 140.15 85.48 66.67 85.12 61.55 56.73 64.31 135.68 114.21 48.21 107.15 55.30 75 IG6_AR1 ActiveIntergenicRegion 0 174.27 371.02 147.67 205.81 284.24 298.42 217.64 185.17 391.58 160.18 66.84 140.40 85.63 66.79 85.28 61.66 56.84 64.42 135.93 114.42 48.30 107.34 55.40