Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 JHDM1D Gene 0 56.14 43.50 33.85 59.63 86.34 96.40 58.78 39.37 58.96 35.75 8.48 17.04 6.48 6.16 2.46 3.76 3.36 13.11 26.58 18.96 13.30 134.32 42.12 2 397560 Transcript 0 22.43 19.31 9.59 18.65 29.16 32.40 15.90 13.20 14.94 14.79 3.94 6.76 4.44 4.41 1.86 0.36 0.07 7.35 11.79 5.63 9.77 55.02 17.63 3 6967 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 472616 Transcript 0 1.27 4.09 0.00 0.39 0.12 1.85 10.31 0.00 3.05 1.19 0.31 5.41 10.07 7.05 8.21 3.11 4.73 0.71 3.55 0.00 2.10 6.96 5.27 5 478996 Transcript 0 2.44 0.22 2.05 5.10 1.52 11.14 7.27 3.67 6.25 3.25 1.04 0.47 2.38 2.35 0.00 1.46 2.59 1.88 5.98 3.24 2.10 9.36 11.39 6 ER1a ExonRegion 0 0.60 0.00 0.00 0.00 0.00 0.98 0.00 0.64 0.46 0.00 0.00 0.00 0.00 0.44 0.00 1.09 0.00 0.00 2.05 1.39 1.99 0.00 12.64 7 E1_Ab KnownBoundary 0 3.63 0.00 0.00 0.00 0.00 4.88 1.85 5.09 5.30 0.00 0.00 0.00 0.00 3.00 0.00 4.10 0.00 0.00 13.37 6.01 2.97 0.00 77.68 8 ER1b ExonRegion 0 0.30 1.05 0.51 1.22 0.58 2.49 1.85 2.75 6.06 4.27 0.50 0.00 1.00 0.82 0.00 2.11 1.04 2.66 7.68 5.62 6.48 7.72 20.48 9 E1_Da NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 1.42 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.79 0.00 0.00 0.00 31.50 10 E1a_E2a KnownJunction 0 0.00 0.00 3.08 9.09 8.66 10.79 6.40 12.32 13.22 14.18 2.58 0.00 0.00 5.06 0.00 4.36 3.93 12.35 16.57 18.34 6.30 33.56 49.51 11 ER2a ExonRegion 0 3.30 5.15 8.89 15.20 5.35 9.08 11.75 14.81 22.62 14.75 6.47 3.88 0.00 2.34 2.80 2.76 3.53 21.96 19.93 17.59 13.73 50.39 56.17 12 E2a_E3a KnownJunction 0 3.41 12.70 9.67 16.51 25.55 12.72 12.63 11.67 22.80 23.02 2.42 0.00 0.00 2.47 0.00 0.00 0.00 9.37 8.56 10.87 14.39 43.05 31.16 13 ER3a ExonRegion 0 3.10 11.12 6.71 15.44 8.53 29.70 26.87 10.80 28.89 24.11 7.29 8.29 3.90 6.98 0.39 2.09 4.78 12.61 26.18 24.52 20.62 69.71 33.72 14 E3a_E4a KnownJunction 0 0.00 6.12 11.53 27.30 7.56 20.10 12.72 20.70 36.98 23.45 9.32 24.91 7.30 7.42 5.32 8.03 4.77 8.66 25.51 33.24 18.04 106.12 45.75 15 ER4a ExonRegion 0 11.12 6.63 5.23 22.40 21.79 25.18 26.39 16.16 30.66 29.88 9.11 20.84 3.85 8.90 1.46 4.86 4.20 17.83 23.37 26.18 19.11 103.23 54.06 16 E4a_E5a KnownJunction 0 6.96 6.38 3.34 23.11 26.15 23.79 17.58 9.69 22.14 19.72 4.00 19.06 0.00 3.00 0.00 7.60 4.77 8.21 13.37 14.70 11.92 78.26 37.30 17 ER5a ExonRegion 0 10.51 9.77 5.61 14.55 24.14 34.26 33.26 11.31 26.04 21.88 13.45 24.97 5.68 8.35 1.65 6.63 7.88 14.80 23.40 18.31 13.95 97.87 43.72 18 E5a_E6a KnownJunction 0 13.19 6.12 1.80 6.86 44.57 51.85 15.50 6.90 21.99 22.73 12.58 18.01 0.00 9.30 0.00 0.00 8.88 14.88 25.98 20.90 8.96 104.16 28.85 19 E6_Aa NovelBoundary 0 3.78 2.96 3.02 3.53 16.30 8.23 32.77 0.00 5.18 1.26 4.79 0.00 6.17 0.00 0.00 0.00 0.00 4.93 3.58 3.20 0.00 2.94 4.10 20 ER6a ExonRegion 0 15.21 10.69 5.53 13.31 22.46 30.82 37.27 15.09 25.93 20.61 14.77 21.79 4.31 8.26 1.91 1.62 3.72 14.36 26.81 16.16 11.34 83.36 32.62 21 E6a_E7a KnownJunction 0 20.15 15.92 2.93 12.25 24.53 32.42 10.64 8.79 30.50 18.43 15.37 44.56 0.00 9.83 0.00 0.00 3.74 13.10 17.13 21.99 11.80 68.46 38.93 22 ER7a ExonRegion 0 17.61 7.02 13.88 19.47 23.06 35.13 29.42 16.87 30.06 18.75 12.52 19.52 3.88 8.39 4.00 0.93 2.47 13.80 27.46 19.75 11.09 93.03 53.98 23 E7_Da NovelBoundary 0 9.33 6.12 10.64 3.56 8.66 2.90 31.89 3.37 7.03 1.50 2.37 0.00 0.00 0.00 0.00 0.00 0.00 1.78 9.41 0.00 3.15 26.51 19.97 24 E7a_E8a KnownJunction 0 13.85 9.80 19.93 11.79 8.15 23.05 19.52 3.70 28.47 19.77 11.95 26.86 0.00 6.89 4.45 0.00 4.77 14.72 30.97 23.65 8.03 68.09 42.85 25 E7a_E10a NovelJunction 0 0.00 2.63 4.73 2.66 0.00 0.00 7.73 1.64 1.16 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.62 0.00 0.00 7.78 4.01 26 I7_AR1 ActiveIntronRegion 0 13.05 4.10 6.81 5.68 0.00 0.00 6.91 0.00 3.29 0.00 2.61 0.00 0.00 0.00 0.00 0.00 3.06 0.00 2.48 3.35 0.69 9.38 7.07 27 I7_SR1 SilentIntronRegion 0 5.29 4.71 2.67 6.65 7.08 3.26 13.14 2.55 3.63 1.85 0.76 2.60 0.66 0.52 0.50 1.33 2.13 2.42 4.26 3.23 4.88 17.41 10.24 28 I7_AR2 ActiveIntronRegion 0 14.41 6.14 3.53 7.78 1.21 3.19 13.94 7.44 5.38 0.90 1.99 3.45 1.07 2.27 0.30 1.45 0.91 2.11 5.28 4.39 4.26 23.19 6.96 29 I7_SR2 SilentIntronRegion 0 15.25 1.69 0.51 6.76 7.42 1.02 5.51 3.57 1.02 0.47 0.00 2.82 0.00 0.00 0.57 0.00 0.00 0.51 4.40 1.77 0.61 18.48 4.88 30 E8_Aa NovelBoundary 0 23.63 11.25 3.13 16.85 3.48 10.85 30.12 6.20 8.77 0.00 5.37 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 2.59 30.00 7.60 31 ER8a ExonRegion 0 25.11 30.67 20.41 19.27 29.04 35.59 39.78 14.79 29.07 18.12 7.14 23.47 0.00 3.73 5.01 2.53 2.74 18.54 28.85 19.68 15.38 109.01 53.63 32 E8a_E9a KnownJunction 0 36.67 41.97 15.08 25.14 62.48 40.72 40.67 27.44 30.73 9.83 4.69 6.30 0.00 0.00 8.90 4.36 0.00 14.34 9.04 27.16 15.01 112.18 70.17 33 ER9a ExonRegion 0 27.70 35.64 26.97 19.85 38.32 30.21 53.62 16.60 37.81 21.47 11.30 16.21 7.34 5.71 2.12 1.03 1.23 11.02 17.19 31.75 23.53 116.57 63.06 34 E9a_E10a KnownJunction 0 9.71 24.47 17.98 16.85 19.95 20.27 25.79 23.62 38.25 18.37 9.32 12.60 0.00 5.18 0.00 11.02 0.00 9.78 4.24 20.45 15.69 118.06 26.38 35 ER9b ExonRegion 0 13.21 25.17 23.66 19.03 14.12 20.30 26.48 15.26 44.42 16.57 4.13 19.41 7.92 5.66 1.30 4.82 2.50 6.94 9.67 21.57 11.93 110.28 33.21 36 I9 Intron 0 16.71 2.84 7.91 6.77 7.47 1.76 10.67 5.10 4.83 2.49 0.81 1.81 1.36 0.37 0.46 0.19 0.21 1.02 2.26 2.13 1.51 8.07 5.94 37 I9_AR1 ActiveIntronRegion 0 24.87 3.41 5.19 7.34 6.91 2.37 8.72 4.32 2.61 1.32 1.25 1.84 1.42 0.00 0.74 1.15 0.43 0.24 0.82 1.64 0.28 4.04 4.93 38 I9_AR2 ActiveIntronRegion 0 13.37 2.29 7.64 10.23 11.02 2.61 8.61 5.72 5.94 3.83 0.00 0.41 2.13 0.80 0.99 0.00 0.00 1.04 3.59 4.48 0.26 9.66 4.66 39 I9_SR2 SilentIntronRegion 0 15.48 2.81 8.59 6.01 6.96 1.46 11.51 5.17 5.14 2.52 0.85 2.07 1.21 0.38 0.30 0.00 0.19 1.19 2.34 1.81 2.02 8.71 6.41 40 ER10a ExonRegion 0 14.84 16.51 20.76 18.12 32.92 41.02 36.80 17.83 35.63 21.18 10.59 17.36 4.33 7.47 0.25 5.46 2.40 12.57 14.23 20.86 15.16 130.17 39.20 41 E10a_E11a KnownJunction 0 34.23 26.71 20.28 17.41 64.18 62.07 65.80 17.00 39.12 21.09 2.16 24.01 13.64 9.42 4.82 12.05 8.70 21.47 13.65 17.51 13.84 130.98 58.73 42 ER11a ExonRegion 0 28.93 36.20 17.93 27.17 50.96 46.42 49.94 13.62 36.63 24.82 10.07 22.90 11.05 10.21 1.39 5.78 2.53 9.57 22.40 18.39 16.33 126.03 44.02 43 E11a_E12a KnownJunction 0 13.19 39.47 26.67 20.71 39.05 28.45 32.33 15.32 30.70 22.30 9.53 6.30 0.00 14.89 0.00 4.10 8.70 7.83 42.54 18.22 12.36 140.78 43.54 44 ER12a ExonRegion 0 22.68 27.48 25.83 27.17 39.77 42.95 46.38 21.87 43.28 13.04 11.51 29.17 14.67 9.59 0.70 5.05 11.55 17.39 47.80 25.42 14.31 141.86 45.98 45 E12a_E13a KnownJunction 0 17.71 9.60 30.28 26.24 77.84 23.57 66.16 16.88 40.54 9.89 17.64 39.61 6.82 4.41 0.00 4.10 12.90 20.60 63.63 48.32 19.21 124.00 36.36 46 ER13a ExonRegion 0 22.52 18.04 23.98 22.87 34.96 57.70 48.12 17.59 38.90 20.50 12.83 25.56 15.35 8.00 1.18 4.21 10.64 11.54 35.40 26.21 11.04 110.24 40.06 47 E13a_E14a KnownJunction 0 33.56 20.52 20.22 32.66 39.81 70.13 41.29 25.79 48.03 21.73 17.90 43.36 19.64 11.42 0.00 3.25 12.81 2.11 16.00 20.90 7.60 111.87 36.45 48 ER14a ExonRegion 0 22.82 23.45 19.15 33.16 49.82 63.75 61.23 25.44 40.85 24.67 12.74 35.05 13.37 8.83 2.19 3.78 3.28 9.17 22.38 26.77 9.80 135.74 34.58 49 E14a_E15a KnownJunction 0 9.33 34.53 15.35 31.30 39.90 67.18 34.45 25.59 29.46 18.37 9.11 23.41 19.48 12.07 4.45 0.00 0.00 9.91 8.00 36.50 11.92 125.90 44.99 50 ER15a ExonRegion 0 27.73 17.85 14.08 41.62 43.08 66.62 51.08 30.69 38.19 30.83 13.18 40.07 17.42 7.99 0.62 4.64 1.72 17.80 18.62 29.61 13.18 146.25 44.71 51 E15_Da NovelBoundary 0 0.00 3.09 0.00 1.86 4.24 0.00 6.62 2.22 1.39 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.09 11.39 16.30 52 E15a_E16a KnownJunction 1 21.19 9.01 13.81 38.39 68.76 49.18 48.27 39.35 42.42 33.47 9.69 57.62 0.00 12.07 0.00 0.00 4.68 20.93 38.21 21.54 15.07 145.86 50.88 53 ER16a ExonRegion 0 25.85 18.62 16.39 31.41 39.97 77.41 55.26 33.48 53.19 28.81 12.49 33.07 13.50 8.08 1.93 5.09 4.90 20.16 28.92 28.90 16.39 147.99 55.03 54 E16a_E17a KnownJunction 0 34.45 27.03 7.01 46.15 70.97 72.97 49.51 31.13 58.42 44.30 7.16 39.61 0.00 4.65 4.45 0.00 18.33 40.62 44.61 28.70 21.99 155.29 75.72 55 ER17a ExonRegion 0 19.35 20.57 13.54 26.34 42.35 64.53 40.44 21.63 46.10 23.45 9.78 24.05 7.94 9.81 1.11 2.94 4.56 25.12 32.91 28.24 25.97 147.94 59.03 56 E17_Da NovelBoundary 0 3.78 6.25 11.18 18.51 12.39 11.58 10.07 6.65 15.80 2.39 9.58 18.01 0.00 0.00 0.00 0.00 0.00 4.81 3.95 6.46 5.00 29.09 13.06 57 E17a_E18a KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 58 E17a_E19a KnownJunction 0 2.96 26.71 12.65 22.34 43.55 72.40 34.93 18.81 32.78 24.66 11.48 13.20 13.31 12.77 4.45 0.00 0.00 22.05 29.65 14.51 27.31 138.27 38.50 59 I17 Intron 0 9.72 3.87 1.45 8.69 6.99 6.68 13.00 4.90 9.91 4.33 3.98 5.77 1.84 1.01 0.46 0.71 0.52 4.15 5.54 4.04 4.36 36.46 14.42 60 I17_SR1 SilentIntronRegion 0 9.74 3.87 1.45 8.70 7.00 6.69 13.02 4.90 9.93 4.34 3.99 5.78 1.84 1.01 0.46 0.71 0.52 4.16 5.55 4.05 4.37 36.52 14.44 61 E18_Aa NovelBoundary 0 39.78 17.83 66.73 47.08 14.60 32.99 46.77 58.08 72.92 61.41 19.43 20.11 7.30 0.00 11.00 11.71 8.98 76.27 21.65 36.30 24.83 40.41 29.28 62 ER18a ExonRegion 0 7.70 9.40 0.00 1.36 2.57 8.03 10.17 0.00 1.19 1.77 1.47 9.44 5.91 7.15 7.66 15.63 15.65 1.55 13.31 0.00 16.18 24.79 5.23 63 E18_Da KnownBoundary 0 189.29 156.95 386.62 418.56 62.73 104.49 183.98 416.37 385.62 414.21 26.85 32.26 54.38 29.84 37.09 150.30 125.39 546.07 147.67 112.30 65.48 81.69 114.13 64 ER18b ExonRegion 0 2.55 8.18 0.00 0.77 0.24 3.71 16.73 0.00 3.03 1.33 0.62 10.82 20.15 14.10 16.42 6.21 9.45 1.43 7.09 0.00 4.21 13.92 6.87 65 E18_Db NovelBoundary 0 395.40 271.86 386.24 316.21 364.26 224.13 484.99 327.52 219.62 268.49 74.12 214.27 211.35 155.57 228.94 282.32 228.52 346.84 218.55 429.33 169.83 110.53 220.75 66 E18b_E19a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 3.89 0.00 3.07 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.67 67 E19_Aa NovelBoundary 0 7.41 2.76 4.82 0.00 11.38 16.75 26.37 6.12 10.85 2.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 7.34 3.26 5.44 30.00 11.61 68 ER19a ExonRegion 0 15.38 17.81 15.84 27.32 65.73 84.40 54.00 8.45 47.92 22.21 15.77 19.46 4.92 10.84 0.66 1.40 9.94 28.65 41.26 30.86 20.36 116.23 65.81 69 E19a_E20b KnownJunction 0 23.93 21.51 16.14 34.13 53.14 64.91 57.46 4.35 39.03 33.20 19.32 39.16 13.15 6.89 0.00 12.65 0.00 33.20 67.58 34.26 16.62 130.73 128.90 70 E20_Aa NovelBoundary 0 10.30 12.83 11.74 13.25 0.00 15.39 43.15 11.01 10.01 2.04 6.32 6.15 6.82 0.00 0.00 0.00 4.77 6.96 9.32 3.20 4.94 35.27 3.59 71 ER20a ExonRegion 0 2.44 0.22 2.05 5.10 1.52 11.14 7.27 3.67 6.25 3.25 1.04 0.47 2.38 2.35 0.00 1.46 2.59 1.88 5.98 3.24 2.10 9.36 11.39 72 E20_Ab KnownBoundary 0 3.41 0.00 3.61 13.48 3.48 0.00 7.77 9.12 14.70 5.35 4.53 0.00 12.82 7.24 0.00 4.36 0.00 4.23 0.00 3.07 4.88 11.33 0.00 73 ER20b ExonRegion 0 29.94 23.73 20.05 31.68 49.53 73.66 43.94 28.40 65.33 37.34 15.34 18.60 11.34 8.50 2.44 7.63 3.19 29.86 49.43 20.70 44.24 166.96 75.43 74 E20a_E21a KnownJunction 0 30.30 2.83 12.60 15.55 32.34 54.68 32.15 24.36 32.55 18.94 7.95 25.06 0.00 0.00 4.45 9.83 0.00 31.67 30.02 14.89 42.87 94.67 35.94 75 ER21a ExonRegion 0 19.12 15.16 21.39 19.08 39.72 62.97 35.85 26.07 52.73 22.96 9.09 14.70 5.79 9.58 3.40 8.28 4.48 24.52 41.94 23.63 34.06 116.52 57.80 76 E21_Da KnownBoundary 0 28.60 12.04 20.79 19.31 35.91 80.58 29.10 20.54 38.89 28.26 2.58 18.61 0.00 13.48 0.00 4.02 3.93 11.52 18.92 8.88 14.70 102.69 78.70 77 ER21b ExonRegion 0 77.16 58.64 44.91 81.23 117.27 126.16 72.07 51.39 72.31 44.14 7.81 15.93 6.02 5.51 2.73 3.49 2.70 11.70 26.20 18.28 10.79 152.16 40.70 78 E21_Db KnownBoundary 0 56.60 22.17 34.15 37.56 22.07 15.96 5.39 30.76 25.49 23.16 2.68 0.00 0.00 0.00 0.00 0.00 3.55 0.00 4.80 0.00 0.00 68.64 3.67 79 ER21c ExonRegion 0 63.73 31.23 16.11 33.61 43.92 23.81 12.77 20.14 11.57 19.70 0.35 7.07 0.00 0.00 1.12 0.00 0.21 0.00 3.68 1.00 0.00 26.80 1.75