Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-274B21.5 Gene 0 83.99 48.92 95.36 100.20 102.23 90.26 115.09 108.38 136.79 148.25 125.10 150.80 201.22 143.28 76.94 110.45 140.12 214.24 213.21 200.66 164.81 96.39 141.46 2 479267 Transcript 0 64.96 37.04 76.29 79.91 86.57 76.13 91.78 85.63 108.12 116.92 97.43 104.13 150.08 105.76 58.18 85.94 103.15 162.88 161.08 144.99 116.70 75.60 99.66 3 IG14_SR3 SilentIntergenicRegion 0 14.83 25.51 48.83 28.76 47.39 55.11 40.23 26.94 34.34 25.83 10.10 8.80 15.48 30.51 14.51 21.97 24.08 20.65 64.36 25.89 15.07 9.52 8.49 4 IG14_AR3 ActiveIntergenicRegion 0 22.65 61.02 86.71 56.94 46.67 43.08 49.22 45.77 49.20 47.24 16.24 14.52 22.35 64.19 38.88 33.11 27.01 56.92 92.26 39.32 20.59 22.57 14.74 5 IG14_SR4 SilentIntergenicRegion 0 1.43 2.98 6.31 3.95 3.27 4.13 3.86 7.47 9.25 13.66 7.49 0.37 0.03 11.34 6.12 8.35 9.51 18.22 21.45 10.61 14.09 3.61 6.61 6 IG14_AR4 ActiveIntergenicRegion 0 1.91 1.90 1.80 0.85 7.20 8.90 5.78 0.00 1.70 5.48 2.97 0.00 0.00 2.89 1.86 9.03 0.00 7.62 8.16 4.65 12.09 4.98 1.54 7 ER1a ExonRegion 0 43.54 32.61 25.92 47.79 45.22 61.95 71.28 40.52 56.41 73.84 52.78 50.25 51.83 54.03 38.82 40.89 54.49 76.27 114.07 77.81 83.91 31.67 91.74 8 E1_Da NovelBoundary 0 21.71 16.25 24.81 52.61 16.47 2.90 15.02 28.30 9.66 8.46 0.00 6.30 0.00 2.47 0.00 17.09 0.00 2.24 4.80 17.90 2.41 3.12 16.65 9 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E1a_E6a NovelJunction 0 7.41 2.50 1.66 5.33 0.00 0.00 0.00 1.73 4.69 2.85 2.11 0.00 0.00 2.12 0.00 0.00 0.00 16.66 21.46 12.02 0.00 2.27 11.35 11 I1 Intron 0 13.10 10.76 14.69 26.94 19.82 6.01 20.33 17.27 11.16 10.71 1.29 6.91 12.51 1.06 8.53 8.80 5.73 6.13 7.93 12.27 1.58 1.83 6.20 12 I1_SR1 SilentIntronRegion 0 21.50 9.11 14.42 35.27 19.10 5.92 31.62 24.23 13.43 11.56 1.66 6.19 26.60 2.84 9.01 5.94 3.02 5.19 6.59 16.14 2.37 1.35 6.77 13 I1_AR1 ActiveIntronRegion 0 10.68 6.19 21.78 48.85 12.12 6.13 22.16 25.82 21.51 13.88 2.26 8.36 15.77 1.58 10.94 15.66 10.20 9.11 16.63 18.43 2.57 1.87 15.31 14 I1_AR2 ActiveIntronRegion 0 49.96 2.03 28.11 55.22 6.24 3.83 6.42 13.88 11.98 5.35 0.00 4.33 1.28 1.62 5.54 26.48 5.20 11.09 11.78 9.48 0.00 1.89 28.83 15 I1_SR2 SilentIntronRegion 0 12.86 10.95 14.45 26.05 20.10 6.02 20.09 16.90 10.82 10.62 1.26 6.89 12.16 1.01 8.47 8.61 5.67 6.05 7.71 12.03 1.54 1.84 5.86 16 I1_SR1 SilentIntronRegion 0 18.85 7.41 13.64 14.76 8.12 9.65 12.86 15.12 10.02 8.63 0.78 4.30 4.69 2.48 2.96 3.01 2.00 3.16 0.00 6.46 0.89 1.69 4.16 17 ER2a ExonRegion 0 67.46 35.36 36.40 47.15 28.50 29.39 40.10 53.22 57.07 86.67 68.51 74.62 127.74 66.07 42.71 47.60 88.25 97.78 88.35 132.86 110.15 41.41 88.87 18 E2_Da NovelBoundary 1 31.71 12.89 21.35 19.74 46.10 4.71 63.73 51.10 21.53 17.68 9.00 0.00 15.10 2.47 41.91 28.37 60.50 45.81 9.60 32.66 31.38 3.00 28.85 19 E2a_E3a KnownJunction 0 0.00 2.83 0.00 0.00 0.00 0.00 1.63 2.55 0.00 1.67 2.21 0.00 6.66 0.00 4.45 4.36 0.00 1.62 0.00 2.43 0.00 5.45 3.16 20 E2a_E4a NovelJunction 0 20.15 5.85 17.33 24.11 35.82 61.39 12.81 7.31 29.17 63.23 7.00 6.30 14.61 23.96 0.00 20.93 9.35 18.86 46.59 27.42 17.61 11.45 32.86 21 E2a_E5a NovelJunction 0 0.00 0.00 2.96 0.00 3.57 2.90 0.00 2.51 5.03 0.99 2.68 7.65 0.00 0.00 5.19 0.00 0.00 1.53 0.00 0.00 2.29 0.00 12.04 22 E2a_E6a NovelJunction 0 24.67 17.50 24.27 45.65 29.20 10.05 35.46 27.52 14.12 57.54 7.90 7.35 6.82 10.71 8.90 18.97 20.57 47.55 45.46 38.73 36.76 11.94 36.45 23 I2 Intron 0 15.88 5.35 13.58 18.31 14.09 4.10 19.35 23.22 12.72 10.91 4.20 3.84 10.64 2.06 6.75 8.02 12.16 8.77 9.65 15.82 3.48 3.43 9.09 24 I2_SR1 SilentIntronRegion 0 14.47 6.06 14.08 21.71 13.60 6.75 20.42 27.09 14.19 11.38 4.40 4.51 10.83 3.33 5.80 10.94 12.73 14.50 8.95 12.31 2.32 3.29 12.87 25 I2_SR2 SilentIntronRegion 0 40.19 8.08 15.61 25.39 25.07 4.46 30.88 31.62 12.76 13.31 3.63 3.31 19.51 2.91 11.78 13.83 18.50 9.22 16.75 34.99 11.29 3.96 17.91 26 I2_AR2 ActiveIntronRegion 0 16.68 7.31 20.87 21.99 18.93 4.41 19.81 36.74 12.92 14.10 11.77 2.66 15.79 1.10 10.54 9.19 23.32 9.48 20.34 37.71 7.06 2.91 10.08 27 E3_Aa NovelBoundary 1 76.53 53.54 66.29 121.13 72.16 26.18 106.92 109.75 90.74 67.69 73.33 113.44 304.69 81.05 94.69 123.30 97.15 120.92 126.97 153.27 77.41 100.30 120.96 28 ER3a ExonRegion 0 57.39 31.17 49.94 52.61 48.32 23.84 89.58 49.29 65.51 61.87 107.69 124.50 184.52 122.99 62.09 72.86 103.98 93.39 145.12 146.47 140.22 74.29 103.62 29 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 I3 Intron 0 11.98 8.48 7.62 21.92 12.43 7.43 30.13 32.11 17.66 15.69 6.22 15.22 20.28 2.60 6.92 9.03 11.21 2.74 6.64 19.53 3.28 4.22 12.25 31 I3_AR1 ActiveIntronRegion 0 10.99 7.67 9.85 26.82 14.15 7.51 28.37 37.35 17.51 13.59 7.51 20.28 21.60 2.74 8.99 11.16 16.17 2.75 7.33 22.53 4.01 4.34 15.54 32 I3_SR1 SilentIntronRegion 0 25.53 11.29 5.58 27.98 17.42 19.69 43.91 36.05 25.43 14.28 6.67 13.25 29.48 3.25 4.56 18.08 17.31 3.77 20.61 31.35 9.80 7.40 29.73 33 I3_AR2 ActiveIntronRegion 0 11.35 8.88 6.02 17.23 10.50 6.02 30.20 27.42 17.00 17.68 5.12 11.27 18.25 2.42 5.49 6.28 6.42 2.63 4.54 15.79 1.96 3.78 7.59 34 ER4a ExonRegion 0 30.79 17.89 70.12 68.86 27.00 27.88 58.25 67.61 116.19 90.24 95.72 132.25 198.37 130.45 71.94 83.56 119.51 146.18 140.66 146.66 119.20 76.85 94.64 35 E4a_E5a KnownJunction 0 33.12 44.47 76.79 89.23 58.32 66.95 157.00 84.69 130.44 115.24 74.86 151.25 163.46 97.12 44.38 82.46 92.10 155.70 138.17 94.92 100.39 54.44 97.06 36 E4a_E6a NovelJunction 0 23.19 0.00 41.78 22.14 17.06 2.90 45.22 22.59 10.73 38.76 22.37 18.31 43.02 21.84 13.35 19.14 18.79 53.60 22.49 119.08 86.49 10.35 39.69 37 ER5a ExonRegion 0 67.93 43.04 61.74 86.87 105.36 104.55 121.14 86.53 132.17 117.46 104.24 140.17 187.50 131.28 80.21 101.30 113.02 230.30 161.99 128.48 122.35 102.11 148.45 38 E5a_E6a KnownJunction 0 108.98 64.26 73.12 109.01 187.35 135.77 123.43 82.02 122.37 86.28 121.29 156.20 219.63 144.27 79.36 118.86 83.59 236.16 192.38 160.94 157.59 77.58 119.59 39 ER6a ExonRegion 0 129.94 89.48 135.94 143.25 138.63 115.77 167.38 146.81 174.28 198.02 152.75 220.29 287.79 222.99 114.82 163.41 203.85 339.26 346.98 323.05 279.65 123.44 209.45 40 E6a_E7a KnownJunction 1 101.20 35.91 77.05 70.85 94.99 67.75 100.03 112.38 96.41 147.98 87.97 54.77 75.32 65.28 10.63 79.72 83.40 217.46 224.76 124.77 105.21 64.60 98.08 41 E6a_E8a NovelJunction 0 0.00 0.00 0.00 47.85 0.00 2.10 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 2.11 0.00 0.00 0.00 0.00 57.19 42 E6a_E9a NovelJunction 0 2.74 5.85 12.00 18.15 0.00 2.33 5.92 4.72 2.92 14.42 12.32 5.70 0.00 4.89 0.00 6.32 3.74 4.60 9.32 0.00 0.00 4.96 50.11 43 ER7a ExonRegion 0 65.88 32.45 147.50 103.20 80.72 91.10 100.68 162.51 191.60 213.20 167.54 139.81 184.96 169.18 95.50 131.52 216.93 329.84 318.87 299.22 264.22 122.36 99.91 44 E7a_E8a KnownJunction 0 134.47 51.96 126.55 95.53 217.83 217.15 201.47 153.58 168.34 224.38 203.95 133.69 245.60 223.09 163.05 188.67 227.40 293.61 345.99 326.68 210.66 184.50 78.79 45 E8_Aa NovelBoundary 0 9.93 2.43 13.96 17.18 19.86 2.78 50.52 6.00 1.30 6.31 0.00 6.30 0.00 0.00 0.00 4.36 4.77 4.19 0.00 5.31 0.00 0.00 3.50 46 ER8a ExonRegion 0 109.83 61.64 149.51 161.88 197.89 176.36 159.70 176.00 206.95 236.63 181.34 241.52 328.60 192.12 104.85 164.94 161.64 283.54 280.96 244.45 127.93 173.07 203.61 47 E8a_E9a KnownJunction 1 54.16 46.50 167.50 175.77 106.54 83.08 44.30 134.89 180.38 194.45 107.19 17.71 134.24 77.82 38.32 81.77 97.24 137.83 109.93 113.26 63.26 86.28 128.90 48 ER9a ExonRegion 0 99.72 40.07 98.87 106.48 135.09 92.66 124.25 103.16 139.87 139.72 128.27 133.24 155.07 101.21 38.00 98.99 108.22 130.02 130.17 142.88 99.23 67.22 128.29 49 IG15_AR1 ActiveIntergenicRegion 0 8.75 8.41 2.48 2.71 15.98 16.88 11.64 1.12 3.25 1.57 5.33 13.46 20.03 7.77 7.92 6.83 15.20 3.81 10.24 5.87 9.11 6.70 8.10 50 IG15_AR6 ActiveIntergenicRegion 0 13.02 6.99 0.43 0.50 22.28 8.53 3.58 0.63 0.91 0.85 11.41 4.58 5.17 7.35 4.19 5.86 9.73 2.95 10.20 8.86 8.10 3.57 14.44 51 IG15_AR8 ActiveIntergenicRegion 0 7.21 2.24 0.00 0.44 20.05 6.00 1.03 0.00 0.00 0.00 13.33 8.37 9.62 8.81 16.67 8.71 2.85 0.00 5.45 1.73 3.81 0.00 6.27