Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ST7OT2 Gene 0 0.72 2.61 1.30 2.67 2.95 2.74 9.26 4.03 2.85 1.37 0.93 8.82 7.52 0.12 1.01 0.95 3.64 2.88 3.17 7.12 0.71 0.48 0.99 2 433969 Transcript 0 0.78 1.27 0.32 0.82 0.59 0.47 4.12 2.72 1.64 0.54 0.80 0.84 2.09 0.00 0.07 0.78 0.60 3.22 5.02 3.68 0.16 0.15 0.54 3 442719 Transcript 0 0.00 0.34 0.30 0.00 0.92 0.56 0.93 0.45 0.30 0.00 0.32 0.59 0.55 0.22 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 4 434993 Transcript 0 0.00 0.13 0.23 0.13 0.00 0.00 0.25 0.00 0.12 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 5 432541 Transcript 0 0.24 0.56 1.00 0.00 0.00 2.75 2.55 0.22 1.24 0.00 0.00 2.41 3.21 0.00 2.26 0.00 0.00 0.82 0.06 1.50 0.00 0.00 0.65 6 456577 Transcript 0 0.91 0.00 0.00 0.00 3.47 2.14 2.27 0.06 0.06 0.12 0.00 3.41 0.00 0.00 0.86 0.00 1.43 0.00 1.38 1.84 0.00 0.00 1.22 7 446784 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 ER1a ExonRegion 0 0.93 4.16 0.27 2.95 2.35 1.88 8.50 6.40 4.57 1.00 0.56 2.94 7.01 0.00 0.30 0.00 2.41 4.83 1.40 5.29 0.64 0.61 2.15 9 E1_Da NovelBoundary 0 0.00 6.58 1.77 3.03 0.00 2.67 8.26 4.03 8.33 1.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.43 0.00 19.81 0.00 0.00 0.00 10 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 E2_Ab NovelBoundary 0 0.00 3.35 0.00 10.02 0.00 0.00 17.05 2.42 1.79 1.67 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.24 8.76 0.00 0.00 0.00 12 ER2a ExonRegion 0 0.00 0.13 0.00 0.34 0.00 0.00 5.46 4.32 0.08 1.15 1.57 0.00 0.00 0.00 0.00 1.11 0.00 3.23 9.95 5.72 0.00 0.00 0.00 13 E2_Ac KnownBoundary 0 0.00 3.29 0.00 1.80 0.00 0.00 5.92 5.09 1.56 1.58 0.00 0.00 0.00 0.00 0.00 3.85 0.00 4.60 3.86 18.47 0.00 0.00 0.00 14 ER2b ExonRegion 0 0.00 4.64 0.46 0.00 0.00 0.52 10.05 6.59 0.00 3.58 1.93 0.00 0.00 0.00 0.00 2.97 0.00 5.95 12.74 20.88 0.00 0.00 1.47 15 E2_Ad KnownBoundary 0 0.00 9.01 1.30 0.00 0.00 2.33 5.17 3.70 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 4.10 16 ER2c ExonRegion 0 0.00 8.13 1.23 0.68 0.00 5.50 13.24 8.64 0.00 5.73 1.93 0.00 0.00 0.00 0.00 2.97 0.00 7.39 12.74 23.40 0.00 0.00 2.94 17 ER2d ExonRegion 0 2.25 7.78 3.15 5.11 1.68 2.72 9.37 6.24 2.53 3.95 1.06 6.25 5.65 0.00 0.91 1.69 1.04 4.72 7.77 10.39 0.00 0.00 0.60 18 E2_Da NovelBoundary 0 10.45 8.29 7.51 5.29 0.00 0.00 15.90 16.06 18.95 13.35 2.53 0.00 6.49 0.00 0.00 15.30 16.08 10.16 21.08 21.16 5.13 0.00 0.00 19 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER2e ExonRegion 0 2.18 0.79 1.03 0.00 0.00 0.00 2.52 0.17 1.91 0.00 1.06 0.42 1.36 0.00 0.00 2.01 0.00 4.83 8.73 3.71 0.00 0.00 0.00 21 E3_Aa NovelBoundary 0 3.78 23.42 5.00 4.86 11.63 0.00 7.73 6.61 3.36 6.34 0.00 0.00 12.82 0.00 0.00 0.00 8.51 2.20 4.80 2.68 0.00 0.00 0.00 22 ER3a ExonRegion 0 0.00 0.00 0.00 1.19 7.75 2.32 3.90 0.04 0.00 0.99 2.27 2.14 6.20 0.00 0.00 0.00 0.00 2.51 5.49 0.02 1.29 0.00 0.00 23 E3_Da NovelBoundary 0 6.74 9.54 5.77 9.09 21.05 0.00 23.45 12.24 4.54 7.17 0.00 0.00 0.00 0.00 0.00 0.00 12.53 6.59 4.80 5.88 0.00 0.00 0.00 24 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E3a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E3a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER4a ExonRegion 0 0.00 0.65 1.16 0.65 0.00 0.00 1.27 0.00 0.59 0.00 0.00 0.00 2.43 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 28 E4_Da NovelBoundary 0 89.94 385.06 147.69 111.24 194.99 465.36 188.62 92.17 129.60 97.86 502.55 424.34 550.13 62.33 136.84 182.17 295.00 250.34 216.38 182.74 68.82 147.76 75.80 29 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 ER5a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 E6_Aa NovelBoundary 0 0.00 0.00 3.61 1.93 0.00 17.32 9.94 0.00 0.00 0.00 0.00 6.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 ER6a ExonRegion 0 0.00 1.01 0.90 0.00 2.75 1.67 2.80 1.36 0.91 0.00 0.96 1.77 1.64 0.66 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 34 E6_Da NovelBoundary 0 0.00 0.00 0.00 1.43 0.00 2.73 24.51 0.00 0.00 1.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.37 0.00 0.00 0.00 35 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER7a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 1.60 1.48 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.31 0.00 0.00 1.80 37 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER8a ExonRegion 0 0.00 0.55 0.74 0.83 0.73 1.74 4.86 1.75 0.50 1.16 0.00 4.28 4.19 0.00 0.00 0.00 0.90 0.00 0.00 3.46 0.00 0.00 0.00 39 Ix_AR1 ActiveIntronRegion 0 7.90 15.17 6.25 4.42 24.96 6.27 21.00 15.22 5.15 5.85 1.20 7.84 3.43 0.00 1.91 0.92 3.08 2.29 6.93 8.60 0.00 0.65 0.91 40 Ix Intron 0 7.55 21.08 16.95 16.53 20.24 6.18 21.56 16.84 14.52 9.12 2.55 15.59 9.52 0.39 3.91 2.33 5.35 9.47 7.82 10.59 2.56 1.90 4.70 41 Ix_SR2 SilentIntronRegion 0 7.72 19.09 14.82 14.54 21.44 5.19 19.62 15.06 13.21 8.40 2.48 13.29 10.14 0.34 4.04 2.44 4.58 9.24 7.74 9.09 2.76 2.13 4.15 42 Ix_AR2 ActiveIntronRegion 0 4.23 10.17 7.53 5.06 8.03 0.00 17.02 8.64 8.65 4.59 1.38 8.66 0.00 0.00 0.00 0.00 6.60 3.70 0.00 15.50 0.00 0.00 2.94 43 Ix_AR1 ActiveIntronRegion 0 9.88 38.87 31.56 30.33 21.46 9.89 33.65 31.43 26.23 14.79 3.36 25.02 11.91 0.26 4.58 3.45 9.43 13.55 10.90 19.29 3.26 2.22 7.80 44 Ix_SR1 SilentIntronRegion 0 6.21 18.98 16.48 16.08 16.77 7.22 21.63 15.51 13.16 8.69 2.42 17.65 7.06 0.55 3.35 1.63 5.63 8.47 6.83 10.87 1.79 1.23 4.86 45 E9_Aa NovelBoundary 0 6.67 23.42 9.99 1.80 7.98 2.16 14.18 18.11 4.92 11.66 2.00 12.15 13.15 0.00 8.90 0.00 0.00 4.10 7.53 5.69 5.50 0.00 14.85 46 ER9a ExonRegion 0 1.83 0.00 0.00 0.00 6.94 4.29 4.53 0.12 0.13 0.23 0.00 6.82 0.00 0.00 1.72 0.00 2.85 0.00 2.75 3.68 0.00 0.00 2.44 47 E9_Da NovelBoundary 0 6.67 18.55 12.36 7.39 25.64 7.38 25.79 6.61 9.40 9.94 2.68 6.30 6.49 0.00 0.00 0.00 4.30 7.59 0.00 15.72 0.00 0.00 8.37 48 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 Ix Intron 0 2.20 5.81 3.72 5.37 5.64 3.74 16.16 6.43 5.73 4.12 1.58 19.28 11.54 0.15 1.55 1.65 4.66 3.23 3.58 10.84 1.15 1.25 1.97 50 Ix_SR2 SilentIntronRegion 0 3.32 6.77 6.82 7.64 8.87 6.43 19.03 10.04 7.77 6.68 2.58 22.25 17.03 0.09 2.10 2.22 5.53 4.65 5.76 13.10 1.79 1.68 3.13 51 Ix_AR3 ActiveIntronRegion 0 2.12 17.72 3.09 4.48 7.14 2.01 32.97 6.91 5.29 6.72 0.00 16.29 7.15 0.00 0.00 0.00 0.00 1.50 1.21 6.38 0.00 2.08 0.00 52 Ix_AR2 ActiveIntronRegion 0 0.47 20.67 5.31 4.39 6.05 1.09 16.06 7.52 6.95 6.44 0.00 22.21 14.33 0.00 0.00 0.00 0.00 1.81 3.01 9.42 0.00 1.16 0.00 53 Ix_AR1 ActiveIntronRegion 0 0.62 7.70 3.29 3.48 4.80 1.76 18.85 4.63 6.97 5.03 0.98 18.06 7.94 0.20 1.03 2.98 1.96 5.15 3.89 10.52 1.25 5.04 2.50 54 E10_Aa NovelBoundary 0 3.04 5.92 3.34 6.59 16.13 14.03 29.81 3.90 5.38 4.19 2.16 37.51 28.57 0.00 4.45 0.00 4.68 0.00 0.00 2.68 0.00 0.00 0.00 55 ER10a ExonRegion 0 0.52 5.47 3.13 1.99 3.98 4.21 17.15 9.42 4.48 4.15 0.95 24.15 8.66 0.66 2.11 0.00 3.51 1.80 1.56 5.21 0.00 0.00 0.75 56 E10_Da NovelBoundary 0 0.00 3.16 0.00 2.80 15.79 10.56 20.45 16.14 7.41 1.67 2.58 27.46 13.47 0.00 0.00 0.00 0.00 0.00 0.00 12.34 0.00 0.00 4.35 57 E10a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.39 0.00 0.00 0.00 0.00 0.00 0.00 58 Ix_AR2 ActiveIntronRegion 0 0.53 4.71 1.71 0.81 4.22 1.91 16.03 9.83 5.56 4.12 1.27 11.35 8.58 0.17 0.00 0.37 3.41 2.72 6.11 4.42 0.00 0.52 0.74 59 Ix Intron 0 0.60 5.08 3.46 4.83 2.70 4.07 16.55 8.20 4.97 3.93 0.94 20.82 17.72 0.45 1.04 2.04 5.59 3.63 3.21 15.01 1.69 0.25 1.54 60 Ix_SR1 SilentIntronRegion 0 0.60 5.09 3.46 4.83 2.70 4.07 16.56 8.21 4.98 3.93 0.94 20.84 17.73 0.45 1.04 2.04 5.59 3.64 3.21 15.02 1.69 0.25 1.54 61 E11_Aa NovelBoundary 0 2.89 5.79 0.00 6.76 7.56 0.00 21.15 4.44 3.59 5.86 2.68 18.91 6.82 0.00 4.94 0.00 4.21 1.66 0.00 6.01 3.15 5.63 4.35 62 ER11a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 E11_Da NovelBoundary 0 2.96 8.75 5.06 2.06 7.22 2.27 29.24 7.35 1.79 4.51 2.26 12.60 0.00 0.00 0.00 3.42 0.00 4.48 0.00 15.47 0.00 0.00 0.00 64 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65 E12_Aa NovelBoundary 0 3.78 3.35 1.83 10.79 0.00 4.43 7.42 0.00 5.15 1.50 0.00 18.91 13.31 0.00 10.38 4.36 0.00 0.00 14.40 6.14 0.00 0.00 3.93 66 ER12a ExonRegion 0 1.01 0.04 0.00 0.97 2.48 4.28 3.12 2.31 1.75 2.40 0.00 11.90 7.10 0.00 0.98 1.42 4.94 2.19 3.66 2.94 0.00 0.00 0.00 67 E12_Da NovelBoundary 0 0.00 2.70 0.00 7.33 15.28 0.00 18.15 1.64 6.28 1.24 0.00 18.91 6.82 0.00 0.00 0.00 0.00 0.00 9.32 17.45 0.00 0.00 3.50 68 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 4.80 0.00 0.00 0.00 0.00 69 Ix Intron 0 1.05 1.00 2.48 3.01 2.64 2.04 13.07 5.73 4.32 3.38 0.72 23.56 8.14 0.47 1.12 1.47 2.04 1.59 1.18 8.67 0.27 0.51 0.73 70 Ix_SR1 SilentIntronRegion 0 1.05 1.01 2.49 3.02 2.66 2.05 13.14 5.75 4.34 3.39 0.72 23.67 8.18 0.47 1.12 1.48 2.05 1.60 1.19 8.71 0.27 0.52 0.73 71 E13_Aa NovelBoundary 0 0.00 0.00 0.00 2.06 0.00 7.67 13.91 6.74 1.24 2.53 0.00 0.00 0.00 0.00 0.00 0.00 16.92 1.95 0.00 24.10 0.00 0.00 0.00 72 ER13a ExonRegion 0 1.08 3.43 2.23 4.54 4.97 3.88 14.46 4.40 4.68 1.40 2.44 13.30 10.22 0.20 1.67 2.43 8.71 5.87 5.81 15.22 2.13 0.93 1.26 73 E13_Da NovelBoundary 0 2.74 0.00 3.13 0.00 3.99 8.69 14.44 2.46 9.49 1.67 0.00 6.30 19.32 0.00 9.64 0.00 0.00 2.28 0.00 12.02 0.00 0.00 3.67 74 E13a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 75 E13_Db NovelBoundary 0 0.00 2.50 0.00 6.96 4.07 2.38 28.66 6.86 4.34 2.23 0.00 24.61 20.45 0.00 0.00 4.19 13.74 2.45 8.38 6.46 2.72 0.00 0.00 76 ER13b ExonRegion 0 0.47 1.13 2.00 0.00 0.00 5.50 5.10 0.45 2.47 0.00 0.00 4.81 6.43 0.00 4.51 0.00 0.00 1.64 0.12 2.99 0.00 0.00 1.31 77 E14_Aa NovelBoundary 0 0.00 2.89 5.35 13.09 7.89 5.00 20.84 9.08 10.79 3.33 0.00 43.66 19.32 0.00 6.30 0.00 12.90 0.00 0.00 18.92 0.00 0.00 0.00 78 ER14a ExonRegion 0 0.74 2.15 0.96 5.69 4.24 4.51 15.57 6.34 4.21 0.60 0.00 18.23 18.37 0.00 2.52 1.57 5.22 1.62 3.92 8.23 0.78 1.83 2.07